mRNA_H-paniculata_contig17099.3965.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig17099.3965.1
Unique NamemRNA_H-paniculata_contig17099.3965.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig17099.3965.1 vs. uniprot
Match: D7FWZ3_ECTSI (UBA domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWZ3_ECTSI)

HSP 1 Score: 86.3 bits (212), Expect = 1.580e-16
Identity = 44/71 (61.97%), Postives = 54/71 (76.06%), Query Frame = 3 
Query:   45 GSLVEIQVKVLQEMGFPEETARIALKASGYDTNLAAEYCVTGIPPGRLSSLSPPLPIAAAAAPQQQPQDGL 257
            GS VEIQV+ LQ+MGF E+ AR+AL+ASGYDTNLAAEYCVTGIPP R +S++   P AA A    + + GL
Sbjct:  121 GSPVEIQVQALQDMGFAEDAARLALRASGYDTNLAAEYCVTGIPPDRAASVAALSPAAAPAPSSSRGRKGL 191
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BLAST of mRNA_H-paniculata_contig17099.3965.1 vs. uniprot
Match: A0A6H5KRK2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRK2_9PHAE)

HSP 1 Score: 82.0 bits (201), Expect = 2.290e-14
Identity = 42/71 (59.15%), Postives = 52/71 (73.24%), Query Frame = 3 
Query:   45 GSLVEIQVKVLQEMGFPEETARIALKASGYDTNLAAEYCVTGIPPGRLSSLSPPLPIAAAAAPQQQPQDGL 257
            GS VEIQV+ L +MGF E+ AR+AL+ASGYDTNLAAEYCVTGIPP R +S++   P A  A    + + GL
Sbjct:  343 GSPVEIQVQALLDMGFAEDAARLALRASGYDTNLAAEYCVTGIPPDRAASVAALSPAATPAPSSSRGRKGL 413
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig17099.3965.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FWZ3_ECTSI1.580e-1661.97UBA domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5KRK2_9PHAE2.290e-1459.15Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig17099contigH-paniculata_contig17099:1028..3281 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size705
Cds size627
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig17099.3965.1prot_H-paniculata_contig17099.3965.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig17099 1066..3241 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929350.0542192-UTR-H-paniculata_contig17099:1027..10651622929350.0542192-UTR-H-paniculata_contig17099:1027..1065Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig17099 1028..1065 +
1691480825.8282628-UTR-H-paniculata_contig17099:1027..10651691480825.8282628-UTR-H-paniculata_contig17099:1027..1065Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig17099 1028..1065 +
1622929350.1136727-UTR-H-paniculata_contig17099:3241..32811622929350.1136727-UTR-H-paniculata_contig17099:3241..3281Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig17099 3242..3281 +
1691480825.8536553-UTR-H-paniculata_contig17099:3241..32811691480825.8536553-UTR-H-paniculata_contig17099:3241..3281Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig17099 3242..3281 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929350.068628-CDS-H-paniculata_contig17099:1065..11251622929350.068628-CDS-H-paniculata_contig17099:1065..1125Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17099 1066..1125 +
1691480825.837669-CDS-H-paniculata_contig17099:1065..11251691480825.837669-CDS-H-paniculata_contig17099:1065..1125Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17099 1066..1125 +
1622929350.094892-CDS-H-paniculata_contig17099:2674..32411622929350.094892-CDS-H-paniculata_contig17099:2674..3241Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17099 2675..3241 +
1691480825.845653-CDS-H-paniculata_contig17099:2674..32411691480825.845653-CDS-H-paniculata_contig17099:2674..3241Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17099 2675..3241 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig17099.3965.1

>prot_H-paniculata_contig17099.3965.1 ID=prot_H-paniculata_contig17099.3965.1|Name=mRNA_H-paniculata_contig17099.3965.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=209bp
MKGSLVEIQVKVLQEMGFPEETARIALKASGYDTNLAAEYCVTGIPPGRL
SSLSPPLPIAAAAAPQQQPQDGLQRPYVPARGSGVQSSVASGFGASPSSW
QPGRTYGGDGGYRSSGTNGVSNAGAAADGGGSSGGVGMSSNYRGWNSSSN
VEYPPEGPASRNSGRPVGPAPATVVAPGSLDWRTMPRRAMGEGRTSPATG
TGGGTVDV*
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mRNA from alignment at H-paniculata_contig17099:1028..3281+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig17099.3965.1 ID=mRNA_H-paniculata_contig17099.3965.1|Name=mRNA_H-paniculata_contig17099.3965.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2254bp|location=Sequence derived from alignment at H-paniculata_contig17099:1028..3281+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCGGCGAGGGGGGTCAGGGTGAAGGAGGCGCAGGGGGCATGAAAGGGAGC
TTGGTGGAAATCCAGGTGAAGGTACTTCAGGAGATGGGGTTTCCAGAGGT
GAGAAAGGATTTAAGAGCGATAAAAATCTCCCTGATGCTAGAATAAAAAT
GGCAATTGAAAAAATAGATGGTCCTTTTTTTGCGACGTTTTTCCTGGGGG
TGGTGTACGTTTCGGACCAACAGCCAAACGCGTGTTTGGATGTTCATGTA
CCGATGATATATATTCCCCATTTTTTTCGCATGTATATGAGGGAGAAAAG
AAAGGAATATTGAATGTATGCTCAACAAATATTGATCAACACGTGACTTG
TTGACTCTCAATAAGGAACCAAGAAAGGCCCCTACACAGACTGCAAGTTT
ACGTCCTACAACAACACAAGAGGTAAACAAACTGGACCAGGAGAAGATGT
GCGCAATGTGTTAAATACTTGGCTGGTCGACTGAAACTATTCACCGTGGA
TTTATAGCTTGCAACTACAATGCTGCACGAGTCAACCGTGAACGTTTGCG
GCGTGTTTTGCATCAAGTGTATACTTTCTTGGGTCCAGAAGTGAAGTTGG
TTGAGTTTGGCAGATCAGATCTTACAGATTCATACGCGCTATTCCTAAGT
GCATTCAGATTCGTGTATCAAGATTAATTAATGGCTGCTCAAAGTTGAGC
TGATTTTTCCATTTTCACGTTTTTATTTTGTTTTTTTTTCGATTTTCACA
TTTTTCCAACGGAAAAGTACCGAAAGGGGGGCAAAAGTTTCCTTTTTTCG
GCCGACTTATTTTTTTTGCGCCGCGCGTGCATCCGTCGGGCTTTTTGCCA
ATTTGCGTGAAATATTGGGTATCAAATCCAAAAACATGTAGGATTCTAAC
TAAAAAAATCTATAAAATCAGAGATGTTCAAGTGCCCTGCGAAAATAGTC
GACATTATATAATGCACAGAGGAAGTGTATATTGATGGTTCCTTGGTGGA
CAGACAGATGGATAGATGTGCAGACAAAGAGCATTATCTCTGTTGTTGCG
TTCCCAGGACATCGTCTGTGTGACTGTCTGTCTCTAGGATATGTACAGCC
GCAGCTGCCTTCATAGGAGACTTGATCAATTTCGACTTGGACACTTTGGT
GTGTGTGTGCGTCAAAGCAGCATGTTGCAGCTGCAACAACATCCTGTCTT
GAGCAATTAAATGCAGCTCCCCAGTAACCCCCCCTCCCCCCCCCACCTCT
CTGTGTGGTGTTCCGCTACTACGCCATCACGCTTCATGTGGCATTCATGC
AGTCCCAGCATTTTTTGCTTCGACAGTCGAAGAAAATCGAACAAACTATA
AAAACATGTCTAGTTAGTGTACAAAGCGGGAGGTGGTGATAACTACATAA
TTCAACTGAGTAAGGATTATGATGAGTTAAAAGTTGAGATGTGTGTGTAT
AGACAGTCCAACCCCCCTCTACAGTGTAATGCGAAATTCTGTTCCCAGTA
ATTCATAACAGATGCGCTTGTGTGACCCCTATAAATGTGAGTGGTAAAGC
AGCATTCAACTTGAATAAGGAATTAAGATACGCTGTCTTGCCTCCCCCCC
CTGACTGATACCACCTGCTGCGTGCGCGCGTGTGTGTATGCGAGCAGGAG
ACCGCAAGGATAGCTTTGAAAGCTTCGGGGTATGACACCAACCTAGCCGC
CGAGTACTGCGTCACAGGCATTCCGCCGGGCCGTCTGTCGTCCTTGTCCC
CCCCTCTCCCGATAGCAGCAGCAGCAGCACCTCAACAGCAACCGCAGGAC
GGACTGCAGCGACCGTATGTACCGGCCCGAGGGAGCGGAGTCCAATCTTC
TGTTGCCAGTGGCTTCGGCGCAAGCCCCAGCTCTTGGCAACCGGGGAGAA
CCTACGGTGGTGACGGTGGGTATCGGAGCTCGGGGACGAACGGGGTTTCC
AATGCTGGTGCTGCTGCAGATGGGGGAGGCAGCAGTGGCGGGGTTGGGAT
GTCCTCGAACTACCGAGGGTGGAACTCCAGCTCAAACGTGGAGTACCCCC
CAGAAGGGCCGGCGTCGCGGAATAGTGGTCGGCCGGTGGGGCCCGCGCCG
GCGACGGTTGTGGCGCCCGGGAGTCTTGACTGGCGCACGATGCCGCGAAG
AGCGATGGGCGAGGGGCGCACGTCTCCTGCCACTGGCACCGGCGGCGGAA
CCGTTGACGTTTAGAGAAACTTTGAAGCGGATCTTTTTTGGAGGAGATAG
GGGG
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Coding sequence (CDS) from alignment at H-paniculata_contig17099:1028..3281+

>mRNA_H-paniculata_contig17099.3965.1 ID=mRNA_H-paniculata_contig17099.3965.1|Name=mRNA_H-paniculata_contig17099.3965.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1254bp|location=Sequence derived from alignment at H-paniculata_contig17099:1028..3281+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAAAGGGAGCTTGGTGGAAATCCAGGTGAAGGTACTTCAGGAGATGGG
GTTTCCAGAGATGAAAGGGAGCTTGGTGGAAATCCAGGTGAAGGTACTTC
AGGAGATGGGGTTTCCAGAGGAGACCGCAAGGATAGCTTTGAAAGCTTCG
GGGTATGACACCAACCTAGCCGCCGAGTACTGCGTCACAGGCATTCCGCC
GGGCCGTCTGTCGTCCTTGTCCCCCCCTCTCCCGATAGCAGCAGCAGCAG
CACCTCAACAGCAACCGCAGGACGGACTGCAGCGACCGTATGTACCGGCC
CGAGGGAGCGGAGTCCAATCTTCTGTTGCCAGTGGCTTCGGCGCAAGCCC
CAGCTCTTGGCAACCGGGGAGAACCTACGGTGGTGACGGTGGGTATCGGA
GCTCGGGGACGAACGGGGTTTCCAATGCTGGTGCTGCTGCAGATGGGGGA
GGCAGCAGTGGCGGGGTTGGGATGTCCTCGAACTACCGAGGGTGGAACTC
CAGCTCAAACGTGGAGTACCCCCCAGAAGGGCCGGCGTCGCGGAATAGTG
GTCGGCCGGTGGGGCCCGCGCCGGCGACGGTTGTGGCGCCCGGGAGTCTT
GACTGGCGCACGATGCCGCGAAGAGCGATGGGCGAGGGGCGCACGTCTCC
TGCCACTGGCACCGGCGGCGGAACCGTTGACGTTTAGGAGACCGCAAGGA
TAGCTTTGAAAGCTTCGGGGTATGACACCAACCTAGCCGCCGAGTACTGC
GTCACAGGCATTCCGCCGGGCCGTCTGTCGTCCTTGTCCCCCCCTCTCCC
GATAGCAGCAGCAGCAGCACCTCAACAGCAACCGCAGGACGGACTGCAGC
GACCGTATGTACCGGCCCGAGGGAGCGGAGTCCAATCTTCTGTTGCCAGT
GGCTTCGGCGCAAGCCCCAGCTCTTGGCAACCGGGGAGAACCTACGGTGG
TGACGGTGGGTATCGGAGCTCGGGGACGAACGGGGTTTCCAATGCTGGTG
CTGCTGCAGATGGGGGAGGCAGCAGTGGCGGGGTTGGGATGTCCTCGAAC
TACCGAGGGTGGAACTCCAGCTCAAACGTGGAGTACCCCCCAGAAGGGCC
GGCGTCGCGGAATAGTGGTCGGCCGGTGGGGCCCGCGCCGGCGACGGTTG
TGGCGCCCGGGAGTCTTGACTGGCGCACGATGCCGCGAAGAGCGATGGGC
GAGGGGCGCACGTCTCCTGCCACTGGCACCGGCGGCGGAACCGTTGACGT
TTAG
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