mRNA_H-paniculata_contig10607.395.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig10607.395.1
Unique NamemRNA_H-paniculata_contig10607.395.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig10607.395.1 vs. uniprot
Match: D7G288_ECTSI (D-lactate dehydrogenase, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G288_ECTSI)

HSP 1 Score: 159 bits (403), Expect = 2.350e-45
Identity = 76/90 (84.44%), Postives = 82/90 (91.11%), Query Frame = 1 
Query:    1 ELWRERKEALWSLIGLYPDLECLTTDVCVPVSRLADLIGVSKIELDASPLPAPIVAHAGDGNFHALIMFDKNNPKHVDEAHRLSSFMVHK 270
            ELWR+RKEALWSL+GLYP+LEC+TTDVCVPVSRL+DLIG SK ELDAS LPAPIVAHAGDGNFHALIMFD+ NP  V EA RLSSFMVHK
Sbjct:  276 ELWRQRKEALWSLMGLYPELECMTTDVCVPVSRLSDLIGQSKRELDASRLPAPIVAHAGDGNFHALIMFDRTNPADVAEADRLSSFMVHK 365
[Close]
BLAST of mRNA_H-paniculata_contig10607.395.1 vs. uniprot
Match: A0A0K9R847_SPIOL (FAD-binding PCMH-type domain-containing protein (Fragment) n=5 Tax=Chenopodioideae TaxID=1307796 RepID=A0A0K9R847_SPIOL)

HSP 1 Score: 119 bits (298), Expect = 1.040e-30
Identity = 55/88 (62.50%), Postives = 66/88 (75.00%), Query Frame = 1 
Query:    1 ELWRERKEALWSLIGLYPDLECLTTDVCVPVSRLADLIGVSKIELDASPLPAPIVAHAGDGNFHALIMFDKNNPKHVDEAHRLSSFMV 264
            ELW+ RKEALW+   + P  E +TTDVCVP+S+LA+LI  SK  LDASPL   +VAHAGDGNFH LI+FD NN +H  EA RL+ FMV
Sbjct:  180 ELWKMRKEALWACFAMEPSFEAMTTDVCVPLSQLAELISKSKEVLDASPLTCTVVAHAGDGNFHTLILFDPNNEEHRQEAERLNHFMV 267
[Close]
BLAST of mRNA_H-paniculata_contig10607.395.1 vs. uniprot
Match: A0A540NII5_MALBA (FAD-oxidase_C domain-containing protein n=1 Tax=Malus baccata TaxID=106549 RepID=A0A540NII5_MALBA)

HSP 1 Score: 114 bits (285), Expect = 1.310e-30
Identity = 51/89 (57.30%), Postives = 67/89 (75.28%), Query Frame = 1 
Query:    1 ELWRERKEALWSLIGLYPDLECLTTDVCVPVSRLADLIGVSKIELDASPLPAPIVAHAGDGNFHALIMFDKNNPKHVDEAHRLSSFMVH 267
            ELW+ RKEALW+   + P+ E + +DVCVP+S LA+LI  SK++LDAS L   ++AHAGDGNFH +I+FD NN +H  EA RL+ FMVH
Sbjct:   47 ELWKIRKEALWACFAMEPNFEAMISDVCVPLSCLAELISRSKVQLDASELVCTVIAHAGDGNFHTVILFDPNNEEHRREAERLNHFMVH 135
[Close]
BLAST of mRNA_H-paniculata_contig10607.395.1 vs. uniprot
Match: UPI000B78B9A0 (D-lactate dehydrogenase [cytochrome], mitochondrial-like n=1 Tax=Hevea brasiliensis TaxID=3981 RepID=UPI000B78B9A0)

HSP 1 Score: 116 bits (291), Expect = 1.820e-30
Identity = 53/89 (59.55%), Postives = 66/89 (74.16%), Query Frame = 1 
Query:    1 ELWRERKEALWSLIGLYPDLECLTTDVCVPVSRLADLIGVSKIELDASPLPAPIVAHAGDGNFHALIMFDKNNPKHVDEAHRLSSFMVH 267
            ELW+ RKEALW+   + P+ E + +DVCVP+SRLA+LI  SK ELDASPL   ++AHAGDGNFH +I+FD N  K   EA RL+ FMVH
Sbjct:   93 ELWKIRKEALWACFAMEPNYEAMISDVCVPLSRLAELISKSKKELDASPLVCTVIAHAGDGNFHTVILFDPNQEKQRQEAERLNQFMVH 181
[Close]
BLAST of mRNA_H-paniculata_contig10607.395.1 vs. uniprot
Match: S8EAM9_9LAMI (FAD-binding PCMH-type domain-containing protein n=1 Tax=Genlisea aurea TaxID=192259 RepID=S8EAM9_9LAMI)

HSP 1 Score: 121 bits (303), Expect = 3.240e-30
Identity = 55/89 (61.80%), Postives = 68/89 (76.40%), Query Frame = 1 
Query:    1 ELWRERKEALWSLIGLYPDLECLTTDVCVPVSRLADLIGVSKIELDASPLPAPIVAHAGDGNFHALIMFDKNNPKHVDEAHRLSSFMVH 267
            ELW+ RKEALW+   L PD E + TDVCVP+SRLADL+  SK +LDASPL   ++AHAGDGNFH +I+FD ++ K  +EA RLS FMVH
Sbjct:  426 ELWKIRKEALWACFALKPDCEAMITDVCVPLSRLADLVSASKKQLDASPLVCTVIAHAGDGNFHTVILFDPSDVKQREEAERLSHFMVH 514
[Close]
BLAST of mRNA_H-paniculata_contig10607.395.1 vs. uniprot
Match: UPI001CC3CF42 (D-lactate dehydrogenase [cytochrome], mitochondrial-like n=1 Tax=Telopea speciosissima TaxID=54955 RepID=UPI001CC3CF42)

HSP 1 Score: 120 bits (300), Expect = 8.230e-30
Identity = 56/89 (62.92%), Postives = 67/89 (75.28%), Query Frame = 1 
Query:    1 ELWRERKEALWSLIGLYPDLECLTTDVCVPVSRLADLIGVSKIELDASPLPAPIVAHAGDGNFHALIMFDKNNPKHVDEAHRLSSFMVH 267
            ELW+ RKEALW+   + P  E + +DVCVP+SRLA+LI  SK ELDASPL   +VAHAGDGNFH LI+FD NN +H  EA RL+ FMVH
Sbjct:  421 ELWKIRKEALWACFAMEPGFEAMISDVCVPLSRLAELISRSKEELDASPLVCVVVAHAGDGNFHTLILFDPNNEEHKREAERLNHFMVH 509
[Close]
BLAST of mRNA_H-paniculata_contig10607.395.1 vs. uniprot
Match: A0A6U4CM34_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A6U4CM34_9STRA)

HSP 1 Score: 119 bits (298), Expect = 1.170e-29
Identity = 57/87 (65.52%), Postives = 62/87 (71.26%), Query Frame = 1 
Query:    4 LWRERKEALWSLIGLYPDLECLTTDVCVPVSRLADLIGVSKIELDASPLPAPIVAHAGDGNFHALIMFDKNNPKHVDEAHRLSSFMV 264
            +WRERKEALW     YP+     TDV  PVSRLADLI V K ELDASPLPAPI AHAGDGNFH +IM D  N   + EA RLS+FMV
Sbjct:  360 IWRERKEALWHCFAAYPEKTAFITDVIAPVSRLADLISVCKPELDASPLPAPICAHAGDGNFHTVIMIDPGNEAELHEAERLSAFMV 446
[Close]
BLAST of mRNA_H-paniculata_contig10607.395.1 vs. uniprot
Match: A0A4D9B6J5_SALSN (D-lactate dehydrogenase (Cytochrome) n=1 Tax=Salvia splendens TaxID=180675 RepID=A0A4D9B6J5_SALSN)

HSP 1 Score: 114 bits (285), Expect = 3.140e-29
Identity = 52/89 (58.43%), Postives = 66/89 (74.16%), Query Frame = 1 
Query:    1 ELWRERKEALWSLIGLYPDLECLTTDVCVPVSRLADLIGVSKIELDASPLPAPIVAHAGDGNFHALIMFDKNNPKHVDEAHRLSSFMVH 267
            ELW+ RKEALW+   + P+ E L TDVCVP+SRLA++I  SK +LDASPL   ++AHAGDGNFH +I+FD N  +   EA RL+ FMVH
Sbjct:  128 ELWKIRKEALWACFAMEPNSEALITDVCVPLSRLAEIISTSKKQLDASPLVCTVLAHAGDGNFHCVILFDPNKEEQRKEAERLNRFMVH 216
[Close]
BLAST of mRNA_H-paniculata_contig10607.395.1 vs. uniprot
Match: A0A843UNM9_COLES (Uncharacterized protein n=1 Tax=Colocasia esculenta TaxID=4460 RepID=A0A843UNM9_COLES)

HSP 1 Score: 115 bits (287), Expect = 3.190e-29
Identity = 53/89 (59.55%), Postives = 64/89 (71.91%), Query Frame = 1 
Query:    1 ELWRERKEALWSLIGLYPDLECLTTDVCVPVSRLADLIGVSKIELDASPLPAPIVAHAGDGNFHALIMFDKNNPKHVDEAHRLSSFMVH 267
            ELWR RKEALW+   + P  E + TDVCVP+S LA+ I +SK ELDASPL   ++AHAGDGNFH +I+FD NN     EA RL+ FMVH
Sbjct:  110 ELWRIRKEALWACFAMEPGFEAMITDVCVPLSHLAECISLSKKELDASPLVCMVIAHAGDGNFHTVILFDPNNEDQRHEAERLNHFMVH 198
[Close]
BLAST of mRNA_H-paniculata_contig10607.395.1 vs. uniprot
Match: UPI000B8C804E (D-lactate dehydrogenase [cytochrome], mitochondrial-like n=1 Tax=Carica papaya TaxID=3649 RepID=UPI000B8C804E)

HSP 1 Score: 112 bits (279), Expect = 3.520e-29
Identity = 50/88 (56.82%), Postives = 65/88 (73.86%), Query Frame = 1 
Query:    1 ELWRERKEALWSLIGLYPDLECLTTDVCVPVSRLADLIGVSKIELDASPLPAPIVAHAGDGNFHALIMFDKNNPKHVDEAHRLSSFMV 264
            E+W+ RKEALW+   + P+ E + +DVCVP+S LA+LI  SK ELDAS L   ++AHAGDGNFH +I+FD NN +H  EA RL+ FMV
Sbjct:   45 EIWKIRKEALWACFAMEPNFEAMISDVCVPLSHLAELISSSKQELDASSLVCTVIAHAGDGNFHTVILFDPNNEEHRKEAERLNQFMV 132
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig10607.395.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G288_ECTSI2.350e-4584.44D-lactate dehydrogenase, putative n=1 Tax=Ectocarp... [more]
A0A0K9R847_SPIOL1.040e-3062.50FAD-binding PCMH-type domain-containing protein (F... [more]
A0A540NII5_MALBA1.310e-3057.30FAD-oxidase_C domain-containing protein n=1 Tax=Ma... [more]
UPI000B78B9A01.820e-3059.55D-lactate dehydrogenase [cytochrome], mitochondria... [more]
S8EAM9_9LAMI3.240e-3061.80FAD-binding PCMH-type domain-containing protein n=... [more]
UPI001CC3CF428.230e-3062.92D-lactate dehydrogenase [cytochrome], mitochondria... [more]
A0A6U4CM34_9STRA1.170e-2965.52Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A4D9B6J5_SALSN3.140e-2958.43D-lactate dehydrogenase (Cytochrome) n=1 Tax=Salvi... [more]
A0A843UNM9_COLES3.190e-2959.55Uncharacterized protein n=1 Tax=Colocasia esculent... [more]
UPI000B8C804E3.520e-2956.82D-lactate dehydrogenase [cytochrome], mitochondria... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig10607contigH-paniculata_contig10607:4729..5844 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score159.8
Seed ortholog evalue5.8e-37
Seed eggNOG ortholog2880.D7G288
Preferred nameDLD1
KEGG rclassRC00044
KEGG koko:K00102
KEGG ReactionR00197
KEGG Pathwayko00620,map00620
Hectar predicted targeting categoryother localisation
GOsGO:0000166,GO:0003674,GO:0003824,GO:0003973,GO:0004457,GO:0004458,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005759,GO:0006081,GO:0006082,GO:0006089,GO:0008144,GO:0008150,GO:0008152,GO:0008720,GO:0008891,GO:0009056,GO:0009438,GO:0009987,GO:0016020,GO:0016054,GO:0016491,GO:0016614,GO:0016616,GO:0016898,GO:0016899,GO:0017076,GO:0019154,GO:0019752,GO:0019866,GO:0030554,GO:0031090,GO:0031966,GO:0031967,GO:0031974,GO:0031975,GO:0032553,GO:0032555,GO:0032559,GO:0032787,GO:0035639,GO:0036094,GO:0042180,GO:0042182,GO:0042802,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043436,GO:0044237,GO:0044248,GO:0044281,GO:0044282,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0046185,GO:0046395,GO:0048037,GO:0050660,GO:0050662,GO:0051596,GO:0055114,GO:0070013,GO:0071704,GO:0072329,GO:0097159,GO:0097367,GO:1901265,GO:1901363,GO:1901575,GO:1901615,GO:1901616,GO:1903457
EggNOG free text desc.cytokinin dehydrogenase activity
EggNOG OGsCOG0277@1,KOG1231@2759
Ec32 ortholog descriptionFAD-binding, type 2, subdomain 1
Ec32 orthologEc-16_002060.1
EC1.1.2.4
COG Functional cat.C
BiGG ReactioniMM904.YDL174C,iND750.YDL174C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Exons2
Model size270
Cds size270
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928765.2523143-CDS-H-paniculata_contig10607:4728..48241622928765.2523143-CDS-H-paniculata_contig10607:4728..4824Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10607 4729..4824 -
1691480610.7245498-CDS-H-paniculata_contig10607:4728..48241691480610.7245498-CDS-H-paniculata_contig10607:4728..4824Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10607 4729..4824 -
1622928765.2683344-CDS-H-paniculata_contig10607:5670..58441622928765.2683344-CDS-H-paniculata_contig10607:5670..5844Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10607 5671..5844 -
1691480610.7367268-CDS-H-paniculata_contig10607:5670..58441691480610.7367268-CDS-H-paniculata_contig10607:5670..5844Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10607 5671..5844 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig10607.395.1prot_H-paniculata_contig10607.395.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig10607 4729..5844 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig10607.395.1

>prot_H-paniculata_contig10607.395.1 ID=prot_H-paniculata_contig10607.395.1|Name=mRNA_H-paniculata_contig10607.395.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=90bp
ELWRERKEALWSLIGLYPDLECLTTDVCVPVSRLADLIGVSKIELDASPL
PAPIVAHAGDGNFHALIMFDKNNPKHVDEAHRLSSFMVHK
back to top

mRNA from alignment at H-paniculata_contig10607:4729..5844-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig10607.395.1 ID=mRNA_H-paniculata_contig10607.395.1|Name=mRNA_H-paniculata_contig10607.395.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1116bp|location=Sequence derived from alignment at H-paniculata_contig10607:4729..5844- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAGCTGTGGCGAGAAAGGAAGGAGGCATTGTGGTCGCTGATTGGACTTTA
CCCCGATCTGGAGTGCCTCACCACGGACGTGTGCGTGCCAGTGTCTAGGC
TGGCCGATCTGATCGGCGTCAGCAAGATAGAACTGGACGCATCCCCGTTG
CCCGCGCCGATCGTTGCCCACGCGGTAAGATCTGCTAAAGGCTATAGATA
CTTCGCAAATCAGTGACATGGTCAAACTTGTGTGGTTTTTCATATTACGG
CGAAGAGTTTGTATTGGTTAGTTCACCACCGAATTCTCCACCCGGCAAGT
TTTACATCGTGAATGATATGGCGCCTTGTTTTCTTTATAATTCTATATCT
TAGCTCTCGCCTATGAGCGCGTAATATGTATATTTCGCTTGTGTAACTGT
TCGATTTGAAACAGTACAGCAAGCAGGGCGGGGGAAATGTACGGGTTTTT
GTGAACTCTGCTCTCTCTCGTCTTTCGCGTGTACTTCAGCTGCGGTGGTT
TTGCATGCTTCTTGTTTTTCGTCCTTTGAACTACTGAAATAATTTTTTGG
TAAGCTTTGAATGCCTTTTGCGTACAGTAGGCTGAATTCCGTGCAGCTCT
CCGTAGTAATGTCGGGCACTCGGAACACCTGTAGCTCAAAAATGCTTTGT
GAGTATGCGAAATCTTGACATGAGAAACTTCATCATGCGCATCACAATTG
GAACTTTTTTCGGGGTTCCTTGTTTCATCGACAGCCTCTCTGGTACCAGA
TCGGTGGCGACTCAGCGGAGTGCAAAAATCAGCTACGTGGCGGATTGGCT
TAGAGTCGGTCAAAGCTCCAAGAAATTGTAGCAATCACACCTGCGCTGTC
GTCTCAATCTTAACCTCGCTGCTTGGCTTGTGGGATGCAGCCTGACGCGA
TCTTCTTTTTTTGTTTTGTCCTTTGCGTACTCTTTCACGTTCCCGCATAC
TTTTTCGTTATGTTCCTCTCTCTGTCGTTCCCTTTCGTTCTCTCTCTCTC
CATCGGTTTTGATAAAAAAGGGTGACGGAAATTTCCATGCATTGATAATG
TTCGACAAGAACAACCCTAAGCACGTCGACGAGGCACACCGTTTAAGCTC
CTTCATGGTACACAAG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig10607:4729..5844-

>mRNA_H-paniculata_contig10607.395.1 ID=mRNA_H-paniculata_contig10607.395.1|Name=mRNA_H-paniculata_contig10607.395.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=540bp|location=Sequence derived from alignment at H-paniculata_contig10607:4729..5844- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAGCTGTGGCGAGAAAGGAAGGAGGCATTGTGGTCGCTGATTGGACTTTA
CCCCGATCTGGAGTGCCTCACCACGGACGTGTGCGTGCCAGTGTCTAGGC
TGGCCGATCTGATCGGCGTCAGCAAGATAGAACTGGACGCATCCCCGTTG
CCCGCGCCGATCGTTGCCCACGCGGAGCTGTGGCGAGAAAGGAAGGAGGC
ATTGTGGTCGCTGATTGGACTTTACCCCGATCTGGAGTGCCTCACCACGG
ACGTGTGCGTGCCAGTGTCTAGGCTGGCCGATCTGATCGGCGTCAGCAAG
ATAGAACTGGACGCATCCCCGTTGCCCGCGCCGATCGTTGCCCACGCGGG
TGACGGAAATTTCCATGCATTGATAATGTTCGACAAGAACAACCCTAAGC
ACGTCGACGAGGCACACCGTTTAAGCTCCTTCATGGTACACAAGGGTGAC
GGAAATTTCCATGCATTGATAATGTTCGACAAGAACAACCCTAAGCACGT
CGACGAGGCACACCGTTTAAGCTCCTTCATGGTACACAAG
back to top