mRNA_H-paniculata_contig17033.3938.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig17033.3938.1
Unique NamemRNA_H-paniculata_contig17033.3938.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig17033.3938.1 vs. uniprot
Match: D7G858_ECTSI (Leucine--tRNA ligase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G858_ECTSI)

HSP 1 Score: 299 bits (765), Expect = 3.290e-93
Identity = 150/209 (71.77%), Postives = 168/209 (80.38%), Query Frame = 1
Query:    1 AVEEYVKASSSRSDLDRTSASKDKKKTGTFTGAMAVHPISGEKVPVWTADYVLGSYGTGAVMAVPAHDERDLVFAREFDLGVRRVVAPVGVKSPVEGVQEKEDNG--------EIIEAFTGRGLSINSGEGFDGLSSEECMQAIVARLESLGKGRKEVNYRLRDWIFSRQRYWGEPIPIYFPVEMTAGDGGDPRKGDEHKICYDQPIAV 603
            AVEEYV AS+SRSDLDRTS  K KKKTGT TGA+AVHPI+GEKVPVWTADYVLGSYGTGAVMAVPAHDERDL FAR F+L VRRVV P G K                     E++EAFTGRG++INSGEGFDGLS+EEC +A+V++LES   GRKE+NYRLRDWIFSRQRYWGEPIPIYFPVEM   +G DPR+GD+HKICYDQP+ V
Sbjct:  294 AVEEYVTASASRSDLDRTSMGKGKKKTGTDTGALAVHPITGEKVPVWTADYVLGSYGTGAVMAVPAHDERDLAFARTFELPVRRVVKPSGGKXXXXXXXXXXXXXXXXXXXXXEVVEAFTGRGVAINSGEGFDGLSTEECAEAVVSQLESQQHGRKEINYRLRDWIFSRQRYWGEPIPIYFPVEMVDPEG-DPRRGDDHKICYDQPMPV 501          
BLAST of mRNA_H-paniculata_contig17033.3938.1 vs. uniprot
Match: A0A7S2CVV1_9STRA (Leucine--tRNA ligase (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2CVV1_9STRA)

HSP 1 Score: 248 bits (632), Expect = 3.660e-76
Identity = 122/201 (60.70%), Postives = 153/201 (76.12%), Query Frame = 1
Query:    4 VEEYVKASSSRSDLDRTSASKDKKKTGTFTGAMAVHPISGEKVPVWTADYVLGSYGTGAVMAVPAHDERDLVFAREFDLGVRRVVAPVGVKSPVEGVQEKEDNGEII-EAFTGRGLSINSGEGFDGLSSEECMQAIVARLESLGKGRKEVNYRLRDWIFSRQRYWGEPIPIYFPVEMTAGDGGDPRKGDEHKICYDQPIAV 603
            V+EYV AS+ +SD+DRT+   D+ K+G  TGA A+HP++G +VP+W ADYVLGSYGTGAVMAVPAHD RD  FA  F L ++ VV    VK+ V   Q ++D   ++ EAF G G+++NSGEG DGL++ EC  AIV  LE+ GKG K+V Y+LRDW+FSRQRYWGEPIPIYFPVEM  G GGDPR GD+HKI +D+PIAV
Sbjct:  356 VKEYVSASARKSDMDRTATGADRGKSGVSTGAFALHPLTGAEVPIWVADYVLGSYGTGAVMAVPAHDTRDFEFASLFGLPMKTVV----VKADVVANQSEDDGTAMMDEAFCGEGVTVNSGEGLDGLTTSECKDAIVGLLEAEGKGTKQVTYKLRDWVFSRQRYWGEPIPIYFPVEMGEG-GGDPRLGDDHKIRFDEPIAV 551          
BLAST of mRNA_H-paniculata_contig17033.3938.1 vs. uniprot
Match: A0A7S2EKR6_9STRA (Leucine--tRNA ligase n=3 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S2EKR6_9STRA)

HSP 1 Score: 227 bits (578), Expect = 3.550e-67
Identity = 120/204 (58.82%), Postives = 149/204 (73.04%), Query Frame = 1
Query:    1 AVEEYVKASSSRSDLDRTSASKDKKKTGTFTGAMAVHPISGEKVPVWTADYVLGSYGTGAVMAVPAHDERDLVFAREFDLGVRRVVAPVGVKSPVEGVQEKEDNGEIIEAFTGRGLSINSGEGFDGLSSEECMQAIVARLESLGKGRKEVNYRLRDWIFSRQRYWGEPIPIYFPVEMTAG---DGGDPRKGDEHKICYDQPIAV 603
            AV+ YV+ +SSRSDLDRT+A   K+KTG FTG  AVHP++GEKVP+W  DYVLGSYGTGAVMAVPAHDERD  FA ++DL V+ VV P   K      ++ E N E  EAFT  G+++NSGE FDGL++ +  +AI  +L+ +GKG  ++ Y+LRDW+FSRQRYWGEPIPIYFPVE   G      DP+ G EH+I YDQPI V
Sbjct:  350 AVDAYVQKTSSRSDLDRTAA---KEKTGVFTGGYAVHPLTGEKVPIWVGDYVLGSYGTGAVMAVPAHDERDFEFAAKYDLDVKWVVEPQKNKKG----KKPELNTE--EAFTVEGVNMNSGE-FDGLTTTKAKKAITYKLKEIGKGGPKITYKLRDWVFSRQRYWGEPIPIYFPVEFPEGVDPSTVDPKDGCEHEIKYDQPIPV 543          
BLAST of mRNA_H-paniculata_contig17033.3938.1 vs. uniprot
Match: A0A7S4T2X0_9STRA (Leucine--tRNA ligase n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4T2X0_9STRA)

HSP 1 Score: 227 bits (578), Expect = 5.460e-67
Identity = 120/204 (58.82%), Postives = 149/204 (73.04%), Query Frame = 1
Query:    1 AVEEYVKASSSRSDLDRTSASKDKKKTGTFTGAMAVHPISGEKVPVWTADYVLGSYGTGAVMAVPAHDERDLVFAREFDLGVRRVVAPVGVKSPVEGVQEKEDNGEIIEAFTGRGLSINSGEGFDGLSSEECMQAIVARLESLGKGRKEVNYRLRDWIFSRQRYWGEPIPIYFPVEMTAG---DGGDPRKGDEHKICYDQPIAV 603
            AV+ YV+ +SSRSDLDRT+A   K+KTG FTG  AVHP++GEKVP+W  DYVLGSYGTGAVMAVPAHDERD  FA ++DL V+ VV P   K      ++ E N E  EAFT  G+++NSGE FDGL++ +  +AI  +L+ +GKG  ++ Y+LRDW+FSRQRYWGEPIPIYFPVE   G      DP+ G EH+I YDQPI V
Sbjct:  158 AVDAYVQKTSSRSDLDRTAA---KEKTGVFTGGYAVHPLTGEKVPIWVGDYVLGSYGTGAVMAVPAHDERDFEFAAKYDLDVKWVVEPQKNKKG----KKPELNTE--EAFTVEGVNMNSGE-FDGLTTTKAKKAITYKLKEIGKGGPKITYKLRDWVFSRQRYWGEPIPIYFPVEFPEGVDPSTVDPKDGCEHEIKYDQPIPV 351          
BLAST of mRNA_H-paniculata_contig17033.3938.1 vs. uniprot
Match: A0A6U5FWR8_9EUKA (Leucine--tRNA ligase n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A6U5FWR8_9EUKA)

HSP 1 Score: 228 bits (581), Expect = 2.340e-66
Identity = 113/201 (56.22%), Postives = 144/201 (71.64%), Query Frame = 1
Query:    1 AVEEYVKASSSRSDLDRTSASKDKKKTGTFTGAMAVHPISGEKVPVWTADYVLGSYGTGAVMAVPAHDERDLVFAREFDLGVRRVVAPVGVKSPVEGVQEKEDNGEIIEAFTGRGLSINSGEGFDGLSSEECMQAIVARLESLGKGRKEVNYRLRDWIFSRQRYWGEPIPIYFPVEMTAGDGGDPRKGDEHKICYDQPIAV 603
            AVEEY++A+S +SD+DR     +K+KTG  TG    HPISGE +P+W ADYVL +YGTG VMAVPAHDERD  FA+++DL V++VVA        + V    D   + EA T  G+ +NSGEG DGLSS +C  A+V +L++LG+G  +V Y+LRDW+FSRQRYWGEPIPIYFPVE+ A  GGDPR GD H I + +PI V
Sbjct:  355 AVEEYMQAASFKSDMDRQM---NKEKTGVCTGLSVTHPISGEALPLWVADYVLATYGTGVVMAVPAHDERDFSFAKKYDLPVKQVVA--------QSVDAMADASVLEEAMTSFGVCVNSGEGLDGLSSADCQSAMVQKLQALGRGAAKVTYKLRDWVFSRQRYWGEPIPIYFPVEVGAA-GGDPRNGDAHTIDFSRPIPV 543          
BLAST of mRNA_H-paniculata_contig17033.3938.1 vs. uniprot
Match: A0A6U3T6T3_9STRA (Leucine--tRNA ligase n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6U3T6T3_9STRA)

HSP 1 Score: 227 bits (578), Expect = 6.280e-66
Identity = 120/204 (58.82%), Postives = 149/204 (73.04%), Query Frame = 1
Query:    1 AVEEYVKASSSRSDLDRTSASKDKKKTGTFTGAMAVHPISGEKVPVWTADYVLGSYGTGAVMAVPAHDERDLVFAREFDLGVRRVVAPVGVKSPVEGVQEKEDNGEIIEAFTGRGLSINSGEGFDGLSSEECMQAIVARLESLGKGRKEVNYRLRDWIFSRQRYWGEPIPIYFPVEMTAG---DGGDPRKGDEHKICYDQPIAV 603
            AV+ YV+ +SSRSDLDRT+A   K+KTG FTG  AVHP++GEKVP+W  DYVLGSYGTGAVMAVPAHDERD  FA ++DL V+ VV P   K      ++ E N E  EAFT  G+++NSGE FDGL++ +  +AI  +L+ +GKG  ++ Y+LRDW+FSRQRYWGEPIPIYFPVE   G      DP+ G EH+I YDQPI V
Sbjct:  350 AVDAYVQKTSSRSDLDRTAA---KEKTGVFTGGYAVHPLTGEKVPIWVGDYVLGSYGTGAVMAVPAHDERDFEFAAKYDLDVKWVVEPQKNKKG----KKPELNTE--EAFTVEGVNMNSGE-FDGLTTTKAKKAITYKLKEIGKGGPKITYKLRDWVFSRQRYWGEPIPIYFPVEFPEGVDPSTVDPKDGCEHEIKYDQPIPV 543          
BLAST of mRNA_H-paniculata_contig17033.3938.1 vs. uniprot
Match: SYL_SORC5 (Leucine--tRNA ligase n=17 Tax=Sorangium cellulosum TaxID=56 RepID=SYL_SORC5)

HSP 1 Score: 226 bits (576), Expect = 7.320e-66
Identity = 114/201 (56.72%), Postives = 148/201 (73.63%), Query Frame = 1
Query:    1 AVEEYVKASSSRSDLDRTSASKDKKKTGTFTGAMAVHPISGEKVPVWTADYVLGSYGTGAVMAVPAHDERDLVFAREFDLGVRRVVAPVGVKSPVEGVQEKEDNGEIIEAFTGRGLSINSGEGFDGLSSEECMQAIVARLESLGKGRKEVNYRLRDWIFSRQRYWGEPIPIYFPVEMTAGDGGDPRKGDEHKICYDQPIAV 603
            AV  YV A++ +SD +R +A+  ++KTG  TG +AVHPI+G +VP+W ADYVLG YGTGAVMAVP HDERD  FAR + L +  VV+P G             + ++  A+   G+++ SGE FDGL++EEC +A++ARLE+LG+G++EVNY+LRDW+FSRQRYWGEPIPIYFPVE+ A   GDPRKG  H I YDQPIAV
Sbjct:  313 AVRAYVAAAAGKSDRERLAAAA-REKTGVDTGLVAVHPITGVEVPIWVADYVLGGYGTGAVMAVPGHDERDFSFARTYGLPIVEVVSPDGSL-----------HDQLEAAYVDPGVAVRSGE-FDGLATEECKRAVIARLEALGRGKREVNYKLRDWVFSRQRYWGEPIPIYFPVEL-ADPQGDPRKGAAHTIRYDQPIAV 499          
BLAST of mRNA_H-paniculata_contig17033.3938.1 vs. uniprot
Match: A0A4U1GXD5_9DELT (Leucine--tRNA ligase n=1 Tax=Polyangium aurulentum TaxID=2567896 RepID=A0A4U1GXD5_9DELT)

HSP 1 Score: 224 bits (570), Expect = 4.450e-65
Identity = 115/201 (57.21%), Postives = 139/201 (69.15%), Query Frame = 1
Query:    1 AVEEYVKASSSRSDLDRTSASKDKKKTGTFTGAMAVHPISGEKVPVWTADYVLGSYGTGAVMAVPAHDERDLVFAREFDLGVRRVVAPVGVKSPVEGVQEKEDNGEIIEAFTGRGLSINSGEGFDGLSSEECMQAIVARLESLGKGRKEVNYRLRDWIFSRQRYWGEPIPIYFPVEMTAGDGGDPRKGDEHKICYDQPIAV 603
            AV  YV A++ +SDLDRT+ SK K  TG  TGAMA+HPI+G+ VP+W ADYV+G YGTGAVMAVP HDERD  FA+ FDL +  VV+P G             +  +  A+   G+ + SG  FDGL S +  +AIVA LE  GKG  ++ Y+LRDW+FSRQRYWGEPIPIYFPVEM     GDPRKGDEH I +DQPIAV
Sbjct:  299 AVRAYVDAAARKSDLDRTAVSKTK--TGVPTGAMAIHPITGQPVPIWVADYVIGGYGTGAVMAVPGHDERDFAFAKAFDLPIIEVVSPDGAL-----------HASLDAAYVDEGVLVRSGP-FDGLKSNDGKRAIVADLEKRGKGSSKITYKLRDWVFSRQRYWGEPIPIYFPVEMKDA-AGDPRKGDEHTIRFDQPIAV 484          
BLAST of mRNA_H-paniculata_contig17033.3938.1 vs. uniprot
Match: A0A7S0DSW1_9EUKA (Leucine--tRNA ligase (Fragment) n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0DSW1_9EUKA)

HSP 1 Score: 214 bits (545), Expect = 6.590e-65
Identity = 113/201 (56.22%), Postives = 139/201 (69.15%), Query Frame = 1
Query:    4 VEEYVKASSSRSDLDRTS-ASKDKKKTGTFTGAMAVHPISGEKVPVWTADYVLGSYGTGAVMAVPAHDERDLVFAREFDLGVRRVVAPVGVKSPVEGVQEKEDNGEIIEAFTGRGLSINSGEGFDGLSSEECMQAIVARLESLGKGRKEVNYRLRDWIFSRQRYWGEPIPIYFPVEMTAGDGGDPRKGDEHKICYDQPIAV 603
            VEEYVK ++SRSD+DR + A   K+KTG  TGA A+HPI+GE VP+W ADYVLG YG+GAVMAVP HDERD  FA  FDL +++VV         +  ++KE  GE   AFTG G  INSGE FDGL  E+    I+  +E  GKG +++ Y+LRDW+FSRQRYWGEPIPIYFPV +    G DPRK  +HKI +  PI V
Sbjct:  207 VEEYVKKAASRSDMDRIAGAGAGKEKTGVDTGAKAIHPITGETVPIWVADYVLGGYGSGAVMAVPGHDERDFEFANTFDLPIKQVV---------DSGEKKE--GEEETAFTGLGKLINSGE-FDGLEGEKAKAGILDFIEKEGKGGRKIQYKLRDWVFSRQRYWGEPIPIYFPV-LGLAPGADPRKDGDHKIDFSNPIPV 394          
BLAST of mRNA_H-paniculata_contig17033.3938.1 vs. uniprot
Match: A0A0K1E880_CHOCO (Leucine--tRNA ligase n=2 Tax=Chondromyces crocatus TaxID=52 RepID=A0A0K1E880_CHOCO)

HSP 1 Score: 223 bits (568), Expect = 1.330e-64
Identity = 115/201 (57.21%), Postives = 145/201 (72.14%), Query Frame = 1
Query:    1 AVEEYVKASSSRSDLDRTSASKDKKKTGTFTGAMAVHPISGEKVPVWTADYVLGSYGTGAVMAVPAHDERDLVFAREFDLGVRRVVAPVGVKSPVEGVQEKEDNGEIIEAFTGRGLSINSGEGFDGLSSEECMQAIVARLESLGKGRKEVNYRLRDWIFSRQRYWGEPIPIYFPVEMTAGDGGDPRKGDEHKICYDQPIAV 603
            A ++YV A+ +RSD DR  AS  K+KTG  TG +A HPI+G KVPVW ADYVLG YGTGAVMAVP HDERD  FA+   L V  VV+P G           E +G +  AFT  G ++ SGE FDGL++E C +A++ +L+SLG+G  +V+Y+LRDW+FSRQRYWGEPIPIYFPVE+ + DG DPRKG  H++ +DQPIAV
Sbjct:  342 AAQKYVAATINRSDRDRL-ASAAKEKTGVDTGLLATHPITGAKVPVWIADYVLGGYGTGAVMAVPGHDERDFAFAKVHGLPVVEVVSPDG-----------ELHGALEAAFTSDGTAVQSGE-FDGLTTEACKRAVIDKLKSLGRGDGQVSYKLRDWVFSRQRYWGEPIPIYFPVELESPDG-DPRKGAPHRVRFDQPIAV 528          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig17033.3938.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G858_ECTSI3.290e-9371.77Leucine--tRNA ligase n=2 Tax=Ectocarpus TaxID=2879... [more]
A0A7S2CVV1_9STRA3.660e-7660.70Leucine--tRNA ligase (Fragment) n=1 Tax=Dictyocha ... [more]
A0A7S2EKR6_9STRA3.550e-6758.82Leucine--tRNA ligase n=3 Tax=Ditylum brightwellii ... [more]
A0A7S4T2X0_9STRA5.460e-6758.82Leucine--tRNA ligase n=1 Tax=Ditylum brightwellii ... [more]
A0A6U5FWR8_9EUKA2.340e-6656.22Leucine--tRNA ligase n=1 Tax=Calcidiscus leptoporu... [more]
A0A6U3T6T3_9STRA6.280e-6658.82Leucine--tRNA ligase n=2 Tax=Ditylum brightwellii ... [more]
SYL_SORC57.320e-6656.72Leucine--tRNA ligase n=17 Tax=Sorangium cellulosum... [more]
A0A4U1GXD5_9DELT4.450e-6557.21Leucine--tRNA ligase n=1 Tax=Polyangium aurulentum... [more]
A0A7S0DSW1_9EUKA6.590e-6556.22Leucine--tRNA ligase (Fragment) n=1 Tax=Amorphochl... [more]
A0A0K1E880_CHOCO1.330e-6457.21Leucine--tRNA ligase n=2 Tax=Chondromyces crocatus... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig17033contigH-paniculata_contig17033:183..4035 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score236.9
Seed ortholog evalue8.3e-60
Seed eggNOG ortholog1254432.SCE1572_43065
Preferred nameleuS
KEGG rclassRC00055,RC00523
KEGG koko:K01869
KEGG ReactionR03657
KEGG Pathwayko00970,map00970
KEGG ModuleM00359,M00360
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0004812,GO:0004823,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006429,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016020,GO:0016070,GO:0016874,GO:0016875,GO:0019538,GO:0019752,GO:0030312,GO:0034641,GO:0034645,GO:0034660,GO:0040007,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0071944,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576
EggNOG free text desc.Belongs to the class-I aminoacyl-tRNA synthetase family
EggNOG OGs1MV47@1224,2WJ3E@28221,2YU4U@29,42MRQ@68525,COG0495@1,COG0495@2
EC6.1.1.4
COG Functional cat.J
Best tax levelMyxococcales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01007,ko03016,ko03029
Exons4
Model size603
Cds size603
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig17033.3938.1prot_H-paniculata_contig17033.3938.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig17033 183..4035 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929346.85577-CDS-H-paniculata_contig17033:182..2841622929346.85577-CDS-H-paniculata_contig17033:182..284Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17033 183..284 -
1691480824.4176323-CDS-H-paniculata_contig17033:182..2841691480824.4176323-CDS-H-paniculata_contig17033:182..284Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17033 183..284 -
1622929346.8670115-CDS-H-paniculata_contig17033:1562..16971622929346.8670115-CDS-H-paniculata_contig17033:1562..1697Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17033 1563..1697 -
1691480824.4280481-CDS-H-paniculata_contig17033:1562..16971691480824.4280481-CDS-H-paniculata_contig17033:1562..1697Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17033 1563..1697 -
1622929346.8862667-CDS-H-paniculata_contig17033:2207..24441622929346.8862667-CDS-H-paniculata_contig17033:2207..2444Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17033 2208..2444 -
1691480824.435995-CDS-H-paniculata_contig17033:2207..24441691480824.435995-CDS-H-paniculata_contig17033:2207..2444Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17033 2208..2444 -
1622929346.9017017-CDS-H-paniculata_contig17033:3906..40351622929346.9017017-CDS-H-paniculata_contig17033:3906..4035Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17033 3907..4035 -
1691480824.4448724-CDS-H-paniculata_contig17033:3906..40351691480824.4448724-CDS-H-paniculata_contig17033:3906..4035Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17033 3907..4035 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig17033.3938.1

>prot_H-paniculata_contig17033.3938.1 ID=prot_H-paniculata_contig17033.3938.1|Name=mRNA_H-paniculata_contig17033.3938.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=201bp
AVEEYVKASSSRSDLDRTSASKDKKKTGTFTGAMAVHPISGEKVPVWTAD
YVLGSYGTGAVMAVPAHDERDLVFAREFDLGVRRVVAPVGVKSPVEGVQE
KEDNGEIIEAFTGRGLSINSGEGFDGLSSEECMQAIVARLESLGKGRKEV
NYRLRDWIFSRQRYWGEPIPIYFPVEMTAGDGGDPRKGDEHKICYDQPIA
V
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mRNA from alignment at H-paniculata_contig17033:183..4035-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig17033.3938.1 ID=mRNA_H-paniculata_contig17033.3938.1|Name=mRNA_H-paniculata_contig17033.3938.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3853bp|location=Sequence derived from alignment at H-paniculata_contig17033:183..4035- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCGGTGGAGGAGTACGTGAAAGCGAGCTCGAGCAGAAGCGACTTGGACCG GACGTCAGCGAGCAAGGATAAAAAGAAGACCGGCACGTTTACCGGGGCTA TGGCAGTTCACCCCATCTCCGGCGAAAAGGTGCTCAATTTGAACTAAACC AGCTCAAGCCAAGGCTATTCGCATCCCTGTGTAGCTCAGGCATTTTCCTC GACCCAACCACAAAGCTGCGCTGGCAGTGATGGTTGGAAGCTTTCCATAA CTTGATGTCATACATAAAGTCTACGGGGTTGAACACAACGGGTGAAGCTA AAACAGGTTGAAAAGCGCGGGACCTGTGTAAACGTAGATTACTCAATAAA GGGTCATGCAAACAACATTAATTGTGTTTTGTAATTGTTAGGCGAAGGAG GAAGGGATGGCAAACATAAAAAATTTAAAAAAATGAACGATGAGCTGAAA ATAAATAACACTGCGAAGTTATTGCAACGCTGCACTAATGAGAGTTTTGA CCATTAATTTTCGTGTTTTTGTTTTTTTTTCCATGTGTTTAGTATCCATA GAGAGCTATTGATTTTATTGTTGTATTAATCTACCGCCGGATGTACGATG CTTGAAAGGTTAACCGGCAATTTTGATTCATGAGACGTTATGTTTAACTA GATTATTCACAATTTATCTTGAATGAACTATTTAAAAAACGCCTCTATAG TCTAAAGTTTAACATGTGACTCTTGATTGCAACGGGCAATAAACGATTGT GTTTAGCTTGGAGGTCATTCGAACCTGTCAGCCCCCGGATAAATACAATT ACTTGCAAATAGTTTGCACAAAAAACTGGAAGTATTCGCTTGAGTTTTAG AATGAGCTCTGTGTATTCTATGTGCCTCGGACCATCCACGACTGCTAATA ATACTCGTAAATCGAATGGATAGGGGGTGGGTACTTTATTCTATGTGTCC GCTCTTTCTAAAACCAGGTGAATATGTCCAGTCTTTTGTGAAAACCATTT GCTAATTTTTGTAATTATCCGGGGGGTGGAACCTTGGGACACATGGCGCG CGTTCTACCTGGCTCATGTCTAATCTCTGCCTGTGTTTTGTGTGGTATTC ATATATGTACATACATACGTGTGTACTTGTGACGGATCTTCCTGGAGTAC GTTAACATATACGGATCTTGAGGAAGTGGCACGCAGGGGATTCGTTCGCA CCGCTCGCTCAGTATATATCTGACGAATATATCAAATGTACAAGTTACCC TAGTTATTATCTAATTGCAGATAAGTGTTGTCGTTATCTACTTCGATTGG CTTTTCTACAATACTGTGAAACGTTGGCTACTATCATGAGTAGCCTAGTA GTAGCCTGTACACTCATGGGCCAGGGGCGGGGGCGACTGGTAATCCAGCA CCAAATGCTTTGTGTGGGCCGCTTTCGACCGTGTCCTACCCCGTCCCTCT GTACAAAAGAGTGGCCTATTGCAGATATTGTACGTTCTCCCCTTGACTTT TCTGTTTCTTCTTTTGACTCGAAAATATGCACAACACTCACTGCCGCCAT CACCACCATCACCACAACAACTACTGCAAAAAACAAATTAGGTGCCCGTT TGGACTGCCGACTACGTGCTTGGAAGCTACGGCACCGGGGCGGTGATGGC CGTGCCTGCGCACGACGAGAGGGACCTGGTCTTCGCGAGGGAGTTCGACC TAGGCGTGCGGCGTGTTGTCGCGCCGGTCGGTGTGAAGTCGCCCGTAGAG GGCGTCCAGGAGAAGGAAGATAATGGGGAGATAATAGAGGCGTTTACGGG CAGGGGGTTGTCCATCAATAGTGGGGAGGTAAGTGGGTGAGGGATAGTTG TGGACGTGGGGGGGGGCGGGGCGGGTAGCCTCGGATCCCATTGATAATAT AGATACGTTGGACAAGCTTCCAATACCTTCATTTTTATTTTTACATTTAT ATATATATATGTGTGTGTAGTATCAGGTGTGCTGTTCACAAGATGAAATC ATTGTATGCTGATGTTTTTTGGCGCATGCTCATGACGGTAGATACACAAG CAATTTTTAACTCTCCAACAGGCGAAAGAGGCCATCTTTGTTTTTTTAAC CCCCGGAAGGTTCAGGCAAAAACCTCTATCCGATGCTTCCAAACCGAAGT ACGTCTACATTTCCTTTTACAGACGGGACTCATATTCAAGGCGAATACTG TTTAATTTGGTCGCGACTAGTCTTGCTCTAAGTATTCCTGTGAACGTTTC AAAGAACGATCGTACTGTGTCTGTGTCTGTGTCTGTACGTGTACGTGTAC GTGTGCGTGTGCGTATGTGTGTGCGTTTGCGTCTGCAGGGCTTCGACGGA CTGTCTTCTGAAGAGTGCATGCAAGCCATCGTGGCTCGCTTGGAGTCTCT AGGGAAAGGACGAAAGGAGGTGAATTATCGCTTGAGAGACTGGATCTTCA GCCGTCAACGATATTGGGGAGAGGTGAGCTTTTTTTTTTTTTTTTCCCTC TTTAGCACTCACCTCACACTCTACTCTGGTAGTGATGCTGGTGATGTTGA TGGTATGGTCGTAGTGGTGGCAGAGCCATGGTCACATCAGTGAAGTCATG CTCCAGTGTTGTATCGTGTTGCTCGATCTGAGTACAACAACTTGCTGCGC TCTTTTACCGAAGAATGTAGAGAAAAAGAGAGGCATGATGTCCGTCAAGT TTCGCGTGTAGTTTTTGAAGAAATACCGTTAGACCCCCTGATTTTTTTTT TTTCCAAATCCGACTTTCTTGAGAAGGAAAAAGCCTGCATTGCCGAAATA GCAGGTCTATCTATCGAAAAATCTGTCTCAACGAGCGAGACCTTTCTAAC GATACCGCTTTCGTGTGTCATGAGTATCGTCATTGTCCAGAAAATCGAAT CGGAAGAATCACTGGGTGCGATATCTAAGGGTGTTGCGGTACTCTAACGT AAGTACTTGAAGAGTTTGGAGTTATGGAGAAAATTAGGTCCGAAATCGTA ATAACAACAACAATAACAATAACAATGATGACGACGACGAGGATGATATC AATGTGTTGTACATGACCGGATAGGGATGCTTCGTCAGCAGGATTGACTG GCTCGTGGACGTGCCCCCTGCTCGTTGTTTGGGTTGATGATTTTGGCGAA TTTCGTGCGGTGTTGGTCGGTTGGTGTGAGTTGGTGAGATTTGGTTGGTG GGATTTGGTTGGTTAGTTCTTTTTCGGAATAGTATTTTCACTCTTTATTC GACTGTTTTTATTTTGTCTTGTATTGTCTGTGTGCATTGCTTTTTTGTGT TGCCGCGTAAGATCTAGCTGGCTTGTGTACACTGCTCTCCCTCCCTCTCT CTCGCTCCCTCCCTCCCCTCCTAGCTCCTTTCTCTCTTGGATGCTGCATG CGTGGCTATCGTTGAATAACCAAGGCGTGCACATAAAAACCGAAAACTCT TGTTTAAGATCGTACACTTTCGTTGGAGCACATAACCAGTGCGATCTTCA CGGCCAATTTGATTCGGGAGGTCGCACACTGTGTTATCTTGAACGCCTTT CACGGCACGTGCTCCTTTTTGGTCATGATCTAATGTTGATAAGTGTAAAC AACTAAAGTTTATCAGTTGCATGACATGCCTCAACATGGATACATACCCC CCCCCCCCCCCAACCCAACCTCCCTCCCCCGACCCCTCCTCGACTGCCCT CTCGTGGATGGTGTGGCATGGTGGTTCGTGCGACATGATTGGGTACCACA GCCGATTCCGATATACTTTCCGGTGGAGATGACCGCTGGTGATGGGGGAG ACCCCAGGAAAGGAGACGAGCACAAGATCTGCTATGACCAACCTATTGCT GTG
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Coding sequence (CDS) from alignment at H-paniculata_contig17033:183..4035-

>mRNA_H-paniculata_contig17033.3938.1 ID=mRNA_H-paniculata_contig17033.3938.1|Name=mRNA_H-paniculata_contig17033.3938.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1206bp|location=Sequence derived from alignment at H-paniculata_contig17033:183..4035- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCGGTGGAGGAGTACGTGAAAGCGAGCTCGAGCAGAAGCGACTTGGACCG
GACGTCAGCGAGCAAGGATAAAAAGAAGACCGGCACGTTTACCGGGGCTA
TGGCAGTTCACCCCATCTCCGGCGAAAAGGCGGTGGAGGAGTACGTGAAA
GCGAGCTCGAGCAGAAGCGACTTGGACCGGACGTCAGCGAGCAAGGATAA
AAAGAAGACCGGCACGTTTACCGGGGCTATGGCAGTTCACCCCATCTCCG
GCGAAAAGGTGCCCGTTTGGACTGCCGACTACGTGCTTGGAAGCTACGGC
ACCGGGGCGGTGATGGCCGTGCCTGCGCACGACGAGAGGGACCTGGTCTT
CGCGAGGGAGTTCGACCTAGGCGTGCGGCGTGTTGTCGCGCCGGTCGGTG
TGAAGTCGCCCGTAGAGGGCGTCCAGGAGAAGGAAGATAATGGGGAGATA
ATAGAGGCGTTTACGGGCAGGGGGTTGTCCATCAATAGTGGGGAGGTGCC
CGTTTGGACTGCCGACTACGTGCTTGGAAGCTACGGCACCGGGGCGGTGA
TGGCCGTGCCTGCGCACGACGAGAGGGACCTGGTCTTCGCGAGGGAGTTC
GACCTAGGCGTGCGGCGTGTTGTCGCGCCGGTCGGTGTGAAGTCGCCCGT
AGAGGGCGTCCAGGAGAAGGAAGATAATGGGGAGATAATAGAGGCGTTTA
CGGGCAGGGGGTTGTCCATCAATAGTGGGGAGGGCTTCGACGGACTGTCT
TCTGAAGAGTGCATGCAAGCCATCGTGGCTCGCTTGGAGTCTCTAGGGAA
AGGACGAAAGGAGGTGAATTATCGCTTGAGAGACTGGATCTTCAGCCGTC
AACGATATTGGGGAGAGGGCTTCGACGGACTGTCTTCTGAAGAGTGCATG
CAAGCCATCGTGGCTCGCTTGGAGTCTCTAGGGAAAGGACGAAAGGAGGT
GAATTATCGCTTGAGAGACTGGATCTTCAGCCGTCAACGATATTGGGGAG
AGCCGATTCCGATATACTTTCCGGTGGAGATGACCGCTGGTGATGGGGGA
GACCCCAGGAAAGGAGACGAGCACAAGATCTGCTATGACCAACCTATTGC
TGTGCCGATTCCGATATACTTTCCGGTGGAGATGACCGCTGGTGATGGGG
GAGACCCCAGGAAAGGAGACGAGCACAAGATCTGCTATGACCAACCTATT
GCTGTG
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