mRNA_H-paniculata_contig17033.3938.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig17033.3938.1 vs. uniprot
Match: D7G858_ECTSI (Leucine--tRNA ligase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G858_ECTSI) HSP 1 Score: 299 bits (765), Expect = 3.290e-93 Identity = 150/209 (71.77%), Postives = 168/209 (80.38%), Query Frame = 1
Query: 1 AVEEYVKASSSRSDLDRTSASKDKKKTGTFTGAMAVHPISGEKVPVWTADYVLGSYGTGAVMAVPAHDERDLVFAREFDLGVRRVVAPVGVKSPVEGVQEKEDNG--------EIIEAFTGRGLSINSGEGFDGLSSEECMQAIVARLESLGKGRKEVNYRLRDWIFSRQRYWGEPIPIYFPVEMTAGDGGDPRKGDEHKICYDQPIAV 603
AVEEYV AS+SRSDLDRTS K KKKTGT TGA+AVHPI+GEKVPVWTADYVLGSYGTGAVMAVPAHDERDL FAR F+L VRRVV P G K E++EAFTGRG++INSGEGFDGLS+EEC +A+V++LES GRKE+NYRLRDWIFSRQRYWGEPIPIYFPVEM +G DPR+GD+HKICYDQP+ V
Sbjct: 294 AVEEYVTASASRSDLDRTSMGKGKKKTGTDTGALAVHPITGEKVPVWTADYVLGSYGTGAVMAVPAHDERDLAFARTFELPVRRVVKPSGGKXXXXXXXXXXXXXXXXXXXXXEVVEAFTGRGVAINSGEGFDGLSTEECAEAVVSQLESQQHGRKEINYRLRDWIFSRQRYWGEPIPIYFPVEMVDPEG-DPRRGDDHKICYDQPMPV 501
BLAST of mRNA_H-paniculata_contig17033.3938.1 vs. uniprot
Match: A0A7S2CVV1_9STRA (Leucine--tRNA ligase (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2CVV1_9STRA) HSP 1 Score: 248 bits (632), Expect = 3.660e-76 Identity = 122/201 (60.70%), Postives = 153/201 (76.12%), Query Frame = 1
Query: 4 VEEYVKASSSRSDLDRTSASKDKKKTGTFTGAMAVHPISGEKVPVWTADYVLGSYGTGAVMAVPAHDERDLVFAREFDLGVRRVVAPVGVKSPVEGVQEKEDNGEII-EAFTGRGLSINSGEGFDGLSSEECMQAIVARLESLGKGRKEVNYRLRDWIFSRQRYWGEPIPIYFPVEMTAGDGGDPRKGDEHKICYDQPIAV 603
V+EYV AS+ +SD+DRT+ D+ K+G TGA A+HP++G +VP+W ADYVLGSYGTGAVMAVPAHD RD FA F L ++ VV VK+ V Q ++D ++ EAF G G+++NSGEG DGL++ EC AIV LE+ GKG K+V Y+LRDW+FSRQRYWGEPIPIYFPVEM G GGDPR GD+HKI +D+PIAV
Sbjct: 356 VKEYVSASARKSDMDRTATGADRGKSGVSTGAFALHPLTGAEVPIWVADYVLGSYGTGAVMAVPAHDTRDFEFASLFGLPMKTVV----VKADVVANQSEDDGTAMMDEAFCGEGVTVNSGEGLDGLTTSECKDAIVGLLEAEGKGTKQVTYKLRDWVFSRQRYWGEPIPIYFPVEMGEG-GGDPRLGDDHKIRFDEPIAV 551
BLAST of mRNA_H-paniculata_contig17033.3938.1 vs. uniprot
Match: A0A7S2EKR6_9STRA (Leucine--tRNA ligase n=3 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S2EKR6_9STRA) HSP 1 Score: 227 bits (578), Expect = 3.550e-67 Identity = 120/204 (58.82%), Postives = 149/204 (73.04%), Query Frame = 1
Query: 1 AVEEYVKASSSRSDLDRTSASKDKKKTGTFTGAMAVHPISGEKVPVWTADYVLGSYGTGAVMAVPAHDERDLVFAREFDLGVRRVVAPVGVKSPVEGVQEKEDNGEIIEAFTGRGLSINSGEGFDGLSSEECMQAIVARLESLGKGRKEVNYRLRDWIFSRQRYWGEPIPIYFPVEMTAG---DGGDPRKGDEHKICYDQPIAV 603
AV+ YV+ +SSRSDLDRT+A K+KTG FTG AVHP++GEKVP+W DYVLGSYGTGAVMAVPAHDERD FA ++DL V+ VV P K ++ E N E EAFT G+++NSGE FDGL++ + +AI +L+ +GKG ++ Y+LRDW+FSRQRYWGEPIPIYFPVE G DP+ G EH+I YDQPI V
Sbjct: 350 AVDAYVQKTSSRSDLDRTAA---KEKTGVFTGGYAVHPLTGEKVPIWVGDYVLGSYGTGAVMAVPAHDERDFEFAAKYDLDVKWVVEPQKNKKG----KKPELNTE--EAFTVEGVNMNSGE-FDGLTTTKAKKAITYKLKEIGKGGPKITYKLRDWVFSRQRYWGEPIPIYFPVEFPEGVDPSTVDPKDGCEHEIKYDQPIPV 543
BLAST of mRNA_H-paniculata_contig17033.3938.1 vs. uniprot
Match: A0A7S4T2X0_9STRA (Leucine--tRNA ligase n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4T2X0_9STRA) HSP 1 Score: 227 bits (578), Expect = 5.460e-67 Identity = 120/204 (58.82%), Postives = 149/204 (73.04%), Query Frame = 1
Query: 1 AVEEYVKASSSRSDLDRTSASKDKKKTGTFTGAMAVHPISGEKVPVWTADYVLGSYGTGAVMAVPAHDERDLVFAREFDLGVRRVVAPVGVKSPVEGVQEKEDNGEIIEAFTGRGLSINSGEGFDGLSSEECMQAIVARLESLGKGRKEVNYRLRDWIFSRQRYWGEPIPIYFPVEMTAG---DGGDPRKGDEHKICYDQPIAV 603
AV+ YV+ +SSRSDLDRT+A K+KTG FTG AVHP++GEKVP+W DYVLGSYGTGAVMAVPAHDERD FA ++DL V+ VV P K ++ E N E EAFT G+++NSGE FDGL++ + +AI +L+ +GKG ++ Y+LRDW+FSRQRYWGEPIPIYFPVE G DP+ G EH+I YDQPI V
Sbjct: 158 AVDAYVQKTSSRSDLDRTAA---KEKTGVFTGGYAVHPLTGEKVPIWVGDYVLGSYGTGAVMAVPAHDERDFEFAAKYDLDVKWVVEPQKNKKG----KKPELNTE--EAFTVEGVNMNSGE-FDGLTTTKAKKAITYKLKEIGKGGPKITYKLRDWVFSRQRYWGEPIPIYFPVEFPEGVDPSTVDPKDGCEHEIKYDQPIPV 351
BLAST of mRNA_H-paniculata_contig17033.3938.1 vs. uniprot
Match: A0A6U5FWR8_9EUKA (Leucine--tRNA ligase n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A6U5FWR8_9EUKA) HSP 1 Score: 228 bits (581), Expect = 2.340e-66 Identity = 113/201 (56.22%), Postives = 144/201 (71.64%), Query Frame = 1
Query: 1 AVEEYVKASSSRSDLDRTSASKDKKKTGTFTGAMAVHPISGEKVPVWTADYVLGSYGTGAVMAVPAHDERDLVFAREFDLGVRRVVAPVGVKSPVEGVQEKEDNGEIIEAFTGRGLSINSGEGFDGLSSEECMQAIVARLESLGKGRKEVNYRLRDWIFSRQRYWGEPIPIYFPVEMTAGDGGDPRKGDEHKICYDQPIAV 603
AVEEY++A+S +SD+DR +K+KTG TG HPISGE +P+W ADYVL +YGTG VMAVPAHDERD FA+++DL V++VVA + V D + EA T G+ +NSGEG DGLSS +C A+V +L++LG+G +V Y+LRDW+FSRQRYWGEPIPIYFPVE+ A GGDPR GD H I + +PI V
Sbjct: 355 AVEEYMQAASFKSDMDRQM---NKEKTGVCTGLSVTHPISGEALPLWVADYVLATYGTGVVMAVPAHDERDFSFAKKYDLPVKQVVA--------QSVDAMADASVLEEAMTSFGVCVNSGEGLDGLSSADCQSAMVQKLQALGRGAAKVTYKLRDWVFSRQRYWGEPIPIYFPVEVGAA-GGDPRNGDAHTIDFSRPIPV 543
BLAST of mRNA_H-paniculata_contig17033.3938.1 vs. uniprot
Match: A0A6U3T6T3_9STRA (Leucine--tRNA ligase n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6U3T6T3_9STRA) HSP 1 Score: 227 bits (578), Expect = 6.280e-66 Identity = 120/204 (58.82%), Postives = 149/204 (73.04%), Query Frame = 1
Query: 1 AVEEYVKASSSRSDLDRTSASKDKKKTGTFTGAMAVHPISGEKVPVWTADYVLGSYGTGAVMAVPAHDERDLVFAREFDLGVRRVVAPVGVKSPVEGVQEKEDNGEIIEAFTGRGLSINSGEGFDGLSSEECMQAIVARLESLGKGRKEVNYRLRDWIFSRQRYWGEPIPIYFPVEMTAG---DGGDPRKGDEHKICYDQPIAV 603
AV+ YV+ +SSRSDLDRT+A K+KTG FTG AVHP++GEKVP+W DYVLGSYGTGAVMAVPAHDERD FA ++DL V+ VV P K ++ E N E EAFT G+++NSGE FDGL++ + +AI +L+ +GKG ++ Y+LRDW+FSRQRYWGEPIPIYFPVE G DP+ G EH+I YDQPI V
Sbjct: 350 AVDAYVQKTSSRSDLDRTAA---KEKTGVFTGGYAVHPLTGEKVPIWVGDYVLGSYGTGAVMAVPAHDERDFEFAAKYDLDVKWVVEPQKNKKG----KKPELNTE--EAFTVEGVNMNSGE-FDGLTTTKAKKAITYKLKEIGKGGPKITYKLRDWVFSRQRYWGEPIPIYFPVEFPEGVDPSTVDPKDGCEHEIKYDQPIPV 543
BLAST of mRNA_H-paniculata_contig17033.3938.1 vs. uniprot
Match: SYL_SORC5 (Leucine--tRNA ligase n=17 Tax=Sorangium cellulosum TaxID=56 RepID=SYL_SORC5) HSP 1 Score: 226 bits (576), Expect = 7.320e-66 Identity = 114/201 (56.72%), Postives = 148/201 (73.63%), Query Frame = 1
Query: 1 AVEEYVKASSSRSDLDRTSASKDKKKTGTFTGAMAVHPISGEKVPVWTADYVLGSYGTGAVMAVPAHDERDLVFAREFDLGVRRVVAPVGVKSPVEGVQEKEDNGEIIEAFTGRGLSINSGEGFDGLSSEECMQAIVARLESLGKGRKEVNYRLRDWIFSRQRYWGEPIPIYFPVEMTAGDGGDPRKGDEHKICYDQPIAV 603
AV YV A++ +SD +R +A+ ++KTG TG +AVHPI+G +VP+W ADYVLG YGTGAVMAVP HDERD FAR + L + VV+P G + ++ A+ G+++ SGE FDGL++EEC +A++ARLE+LG+G++EVNY+LRDW+FSRQRYWGEPIPIYFPVE+ A GDPRKG H I YDQPIAV
Sbjct: 313 AVRAYVAAAAGKSDRERLAAAA-REKTGVDTGLVAVHPITGVEVPIWVADYVLGGYGTGAVMAVPGHDERDFSFARTYGLPIVEVVSPDGSL-----------HDQLEAAYVDPGVAVRSGE-FDGLATEECKRAVIARLEALGRGKREVNYKLRDWVFSRQRYWGEPIPIYFPVEL-ADPQGDPRKGAAHTIRYDQPIAV 499
BLAST of mRNA_H-paniculata_contig17033.3938.1 vs. uniprot
Match: A0A4U1GXD5_9DELT (Leucine--tRNA ligase n=1 Tax=Polyangium aurulentum TaxID=2567896 RepID=A0A4U1GXD5_9DELT) HSP 1 Score: 224 bits (570), Expect = 4.450e-65 Identity = 115/201 (57.21%), Postives = 139/201 (69.15%), Query Frame = 1
Query: 1 AVEEYVKASSSRSDLDRTSASKDKKKTGTFTGAMAVHPISGEKVPVWTADYVLGSYGTGAVMAVPAHDERDLVFAREFDLGVRRVVAPVGVKSPVEGVQEKEDNGEIIEAFTGRGLSINSGEGFDGLSSEECMQAIVARLESLGKGRKEVNYRLRDWIFSRQRYWGEPIPIYFPVEMTAGDGGDPRKGDEHKICYDQPIAV 603
AV YV A++ +SDLDRT+ SK K TG TGAMA+HPI+G+ VP+W ADYV+G YGTGAVMAVP HDERD FA+ FDL + VV+P G + + A+ G+ + SG FDGL S + +AIVA LE GKG ++ Y+LRDW+FSRQRYWGEPIPIYFPVEM GDPRKGDEH I +DQPIAV
Sbjct: 299 AVRAYVDAAARKSDLDRTAVSKTK--TGVPTGAMAIHPITGQPVPIWVADYVIGGYGTGAVMAVPGHDERDFAFAKAFDLPIIEVVSPDGAL-----------HASLDAAYVDEGVLVRSGP-FDGLKSNDGKRAIVADLEKRGKGSSKITYKLRDWVFSRQRYWGEPIPIYFPVEMKDA-AGDPRKGDEHTIRFDQPIAV 484
BLAST of mRNA_H-paniculata_contig17033.3938.1 vs. uniprot
Match: A0A7S0DSW1_9EUKA (Leucine--tRNA ligase (Fragment) n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0DSW1_9EUKA) HSP 1 Score: 214 bits (545), Expect = 6.590e-65 Identity = 113/201 (56.22%), Postives = 139/201 (69.15%), Query Frame = 1
Query: 4 VEEYVKASSSRSDLDRTS-ASKDKKKTGTFTGAMAVHPISGEKVPVWTADYVLGSYGTGAVMAVPAHDERDLVFAREFDLGVRRVVAPVGVKSPVEGVQEKEDNGEIIEAFTGRGLSINSGEGFDGLSSEECMQAIVARLESLGKGRKEVNYRLRDWIFSRQRYWGEPIPIYFPVEMTAGDGGDPRKGDEHKICYDQPIAV 603
VEEYVK ++SRSD+DR + A K+KTG TGA A+HPI+GE VP+W ADYVLG YG+GAVMAVP HDERD FA FDL +++VV + ++KE GE AFTG G INSGE FDGL E+ I+ +E GKG +++ Y+LRDW+FSRQRYWGEPIPIYFPV + G DPRK +HKI + PI V
Sbjct: 207 VEEYVKKAASRSDMDRIAGAGAGKEKTGVDTGAKAIHPITGETVPIWVADYVLGGYGSGAVMAVPGHDERDFEFANTFDLPIKQVV---------DSGEKKE--GEEETAFTGLGKLINSGE-FDGLEGEKAKAGILDFIEKEGKGGRKIQYKLRDWVFSRQRYWGEPIPIYFPV-LGLAPGADPRKDGDHKIDFSNPIPV 394
BLAST of mRNA_H-paniculata_contig17033.3938.1 vs. uniprot
Match: A0A0K1E880_CHOCO (Leucine--tRNA ligase n=2 Tax=Chondromyces crocatus TaxID=52 RepID=A0A0K1E880_CHOCO) HSP 1 Score: 223 bits (568), Expect = 1.330e-64 Identity = 115/201 (57.21%), Postives = 145/201 (72.14%), Query Frame = 1
Query: 1 AVEEYVKASSSRSDLDRTSASKDKKKTGTFTGAMAVHPISGEKVPVWTADYVLGSYGTGAVMAVPAHDERDLVFAREFDLGVRRVVAPVGVKSPVEGVQEKEDNGEIIEAFTGRGLSINSGEGFDGLSSEECMQAIVARLESLGKGRKEVNYRLRDWIFSRQRYWGEPIPIYFPVEMTAGDGGDPRKGDEHKICYDQPIAV 603
A ++YV A+ +RSD DR AS K+KTG TG +A HPI+G KVPVW ADYVLG YGTGAVMAVP HDERD FA+ L V VV+P G E +G + AFT G ++ SGE FDGL++E C +A++ +L+SLG+G +V+Y+LRDW+FSRQRYWGEPIPIYFPVE+ + DG DPRKG H++ +DQPIAV
Sbjct: 342 AAQKYVAATINRSDRDRL-ASAAKEKTGVDTGLLATHPITGAKVPVWIADYVLGGYGTGAVMAVPGHDERDFAFAKVHGLPVVEVVSPDG-----------ELHGALEAAFTSDGTAVQSGE-FDGLTTEACKRAVIDKLKSLGRGDGQVSYKLRDWVFSRQRYWGEPIPIYFPVELESPDG-DPRKGAPHRVRFDQPIAV 528 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig17033.3938.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig17033.3938.1 >prot_H-paniculata_contig17033.3938.1 ID=prot_H-paniculata_contig17033.3938.1|Name=mRNA_H-paniculata_contig17033.3938.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=201bp AVEEYVKASSSRSDLDRTSASKDKKKTGTFTGAMAVHPISGEKVPVWTADback to top mRNA from alignment at H-paniculata_contig17033:183..4035- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig17033.3938.1 ID=mRNA_H-paniculata_contig17033.3938.1|Name=mRNA_H-paniculata_contig17033.3938.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3853bp|location=Sequence derived from alignment at H-paniculata_contig17033:183..4035- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig17033:183..4035- >mRNA_H-paniculata_contig17033.3938.1 ID=mRNA_H-paniculata_contig17033.3938.1|Name=mRNA_H-paniculata_contig17033.3938.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1206bp|location=Sequence derived from alignment at H-paniculata_contig17033:183..4035- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |