mRNA_H-paniculata_contig17015.3932.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig17015.3932.1
Unique NamemRNA_H-paniculata_contig17015.3932.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig17015.3932.1 vs. uniprot
Match: A0A6H5KZD3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZD3_9PHAE)

HSP 1 Score: 82.8 bits (203), Expect = 4.790e-16
Identity = 52/115 (45.22%), Postives = 63/115 (54.78%), Query Frame = 1
Query:   25 CDVIGLQETGRNGPISFCTPAVGYTIYCSGHSPGDKGKPWQMGLGLAVKESIVRAGGPGGIVVTHTSARLMKIRIALTAKCVMTIVVGYAPTEMAAT------RDKDQLWAALHA 351
            CDVIGLQET R G  S      GY I  SG   G K K    G+G+A+KE++  + G  G  V   S RLMK+R+ +   CV+T VVGYAPTE   T      + KD  W AL A
Sbjct:   12 CDVIGLQETRRAGQGSIAHD--GYVIIWSGARAGTKDKRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKVRMQIGHTCVVTFVVGYAPTETVRTTAGGNVKAKDSFWTALDA 124          
BLAST of mRNA_H-paniculata_contig17015.3932.1 vs. uniprot
Match: A0A6H5KEC1_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEC1_9PHAE)

HSP 1 Score: 82.8 bits (203), Expect = 6.070e-16
Identity = 51/115 (44.35%), Postives = 62/115 (53.91%), Query Frame = 1
Query:   25 CDVIGLQETGRNGPISFCTPAVGYTIYCSGHSPGDKGKPWQMGLGLAVKESIVRAGGPGGIVVTHTSARLMKIRIALTAKCVMTIVVGYAPTEMAATRD------KDQLWAALHA 351
            CD+IGLQET R G  S      GY I  SG   G K K    G+G+A+KE++  +GG  G  V   S RLMK+R+ +   C +T VVGYAPTE   T        KD  W AL A
Sbjct:   12 CDMIGLQETRREGQGSIAHD--GYVIIWSGARAGTKDKRGVHGVGIAIKEAMWESGGEEGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPTETVRTTAGGGVDAKDSFWTALDA 124          
BLAST of mRNA_H-paniculata_contig17015.3932.1 vs. uniprot
Match: A0A6H5KQ63_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQ63_9PHAE)

HSP 1 Score: 81.6 bits (200), Expect = 1.110e-15
Identity = 51/115 (44.35%), Postives = 62/115 (53.91%), Query Frame = 1
Query:   25 CDVIGLQETGRNGPISFCTPAVGYTIYCSGHSPGDKGKPWQMGLGLAVKESIVRAGGPGGIVVTHTSARLMKIRIALTAKCVMTIVVGYAPTEMAAT------RDKDQLWAALHA 351
            CDVIGLQET R G  S      GY    SG   G KGK    G+G+A+KE++ ++ G  G  V   S RLMK+R+ +   C +T VVGYAPTE   T        KD  W AL A
Sbjct:   12 CDVIGLQETRREGQGSIAHD--GYVFIWSGARAGTKGKWGVHGVGIAIKEAMWQSVGEEGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPTETVRTTAGGDVNAKDSFWTALDA 124          
BLAST of mRNA_H-paniculata_contig17015.3932.1 vs. uniprot
Match: A0A6H5JMM5_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMM5_9PHAE)

HSP 1 Score: 79.3 bits (194), Expect = 1.230e-15
Identity = 51/115 (44.35%), Postives = 60/115 (52.17%), Query Frame = 1
Query:   25 CDVIGLQETGRNGPISFCTPAVGYTIYCSGHSPGDKGKPWQMGLGLAVKESIVRAGGPGGIVVTHTSARLMKIRIALTAKCVMTIVVGYAPTEMAAT------RDKDQLWAALHA 351
            CDVIGLQET R G  S      GY I  SG   G K K    G+G A+KE++  + G  G  V   S RLMK+R+ +   C +T VVGYAPTE   T        KD  W AL A
Sbjct:   12 CDVIGLQETRREGQGSIAHD--GYVIIWSGARAGTKDKRGVHGVGRAIKEAMWESVGEEGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPTETVRTTAGGDVNAKDSFWTALDA 124          
BLAST of mRNA_H-paniculata_contig17015.3932.1 vs. uniprot
Match: A0A6H5KZE6_9PHAE (Endo/exonuclease/phosphatase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZE6_9PHAE)

HSP 1 Score: 80.5 bits (197), Expect = 1.450e-15
Identity = 51/115 (44.35%), Postives = 61/115 (53.04%), Query Frame = 1
Query:   25 CDVIGLQETGRNGPISFCTPAVGYTIYCSGHSPGDKGKPWQMGLGLAVKESIVRAGGPGGIVVTHTSARLMKIRIALTAKCVMTIVVGYAPTEMAAT------RDKDQLWAALHA 351
            CDVIGLQET R G  S      GY I  SG   G K K    G+G+A+KE+I  + G  G  V   S RLMK+R+ +   C +T VVGYAPTE   +        KD  W AL A
Sbjct:   43 CDVIGLQETRREGQGSIAHD--GYVIIWSGARAGTKDKRGGHGVGIAIKEAIWESVGEEGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPTETVRSTAGGDVNAKDSFWTALDA 155          
BLAST of mRNA_H-paniculata_contig17015.3932.1 vs. uniprot
Match: A0A6H5KBZ6_9PHAE (Endo/exonuclease/phosphatase domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBZ6_9PHAE)

HSP 1 Score: 80.9 bits (198), Expect = 1.530e-15
Identity = 51/115 (44.35%), Postives = 61/115 (53.04%), Query Frame = 1
Query:   25 CDVIGLQETGRNGPISFCTPAVGYTIYCSGHSPGDKGKPWQMGLGLAVKESIVRAGGPGGIVVTHTSARLMKIRIALTAKCVMTIVVGYAPTEMAAT------RDKDQLWAALHA 351
            CDVIGLQET R G  S      GY I  SG   G K K    G+G+A+KE++  + G  G  V   S RLMK+R+ +   C +T VVGYAPTE   T        KD  W AL A
Sbjct:   12 CDVIGLQETRREGQGSIAHD--GYVIIWSGARAGTKDKRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPTETVRTTAGGDVNAKDSFWTALDA 124          
BLAST of mRNA_H-paniculata_contig17015.3932.1 vs. uniprot
Match: A0A6H5JGX2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGX2_9PHAE)

HSP 1 Score: 80.9 bits (198), Expect = 2.810e-15
Identity = 51/115 (44.35%), Postives = 61/115 (53.04%), Query Frame = 1
Query:   25 CDVIGLQETGRNGPISFCTPAVGYTIYCSGHSPGDKGKPWQMGLGLAVKESIVRAGGPGGIVVTHTSARLMKIRIALTAKCVMTIVVGYAPTEMAAT------RDKDQLWAALHA 351
            CDVIGLQET R G  S      GY I  SG   G K K    G+G+A+KE++  + G  G  V   S RLMK+R+ +   C +T VVGYAPTE   T        KD  W AL A
Sbjct:   93 CDVIGLQETRREGQGSIAHD--GYVIIWSGARAGTKDKRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPTETVRTTAGGDVNAKDSFWTALDA 205          
BLAST of mRNA_H-paniculata_contig17015.3932.1 vs. uniprot
Match: A0A6H5L7A7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7A7_9PHAE)

HSP 1 Score: 80.9 bits (198), Expect = 2.810e-15
Identity = 51/115 (44.35%), Postives = 61/115 (53.04%), Query Frame = 1
Query:   25 CDVIGLQETGRNGPISFCTPAVGYTIYCSGHSPGDKGKPWQMGLGLAVKESIVRAGGPGGIVVTHTSARLMKIRIALTAKCVMTIVVGYAPTEMAAT------RDKDQLWAALHA 351
            CDVIGLQET R G  S      GY I  SG   G K K    G+G+A+KE++  + G  G  V   S RLMK+R+ +   C +T VVGYAPTE   T        KD  W AL A
Sbjct:   12 CDVIGLQETRREGQGSIAHD--GYVIIWSGARAGTKDKRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPTETVRTTAGGDVNAKDSFWTALDA 124          
BLAST of mRNA_H-paniculata_contig17015.3932.1 vs. uniprot
Match: A0A6H5JVN7_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVN7_9PHAE)

HSP 1 Score: 80.1 bits (196), Expect = 5.240e-15
Identity = 52/115 (45.22%), Postives = 63/115 (54.78%), Query Frame = 1
Query:   25 CDVIGLQETGRNGPISFCTPAVGYTIYCSGHSPGDKGKPWQMGLGLAVKESIVRAGGPGGIVVTHTSARLMKIRIALTAKCVMTIVVGYAPTE---MAATRD---KDQLWAALHA 351
            CDVIGLQET R G  S      GY I  SG   G K K  + G+G+A+KE++    G  G  V   S RLMK+R+ +   C +T VVGYAPTE   + A  D   KD  W AL A
Sbjct:  189 CDVIGLQETRREGQGSIAHD--GYVIIWSGARAGTKDKRGEQGVGIAIKEAMWETVGEEGRKVECISPRLMKVRLQIGRTCGVTFVVGYAPTETVRITAGGDVNAKDSFWTALDA 301          
BLAST of mRNA_H-paniculata_contig17015.3932.1 vs. uniprot
Match: A0A6H5KDU4_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDU4_9PHAE)

HSP 1 Score: 79.7 bits (195), Expect = 7.090e-15
Identity = 50/122 (40.98%), Postives = 63/122 (51.64%), Query Frame = 1
Query:    1 MLFAKLHECDVIGLQETGRNGPISFCTPAVGYTIYCSGHSPGDKGKPWQMGLGLAVKESIVRAGGPGGIVVTHTSARLMKIRIALTAKCVMTIVVGYAPTEMAATRD-----KDQLWAALHA 351
            M     + CDVIGLQET R G  S      GY +  SG   G K K    G+G+A+KE++  + G  G  V   S RLMK+R+ +   C +T VVGYAP  +  T       KD LW AL A
Sbjct:  149 MQICSTNGCDVIGLQETRREGQGSIAHD--GYVVIWSGARAGTKDKRGVHGVGIAIKEAMWDSAGEEGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPRTVRTTAGGDVNAKDSLWTALDA 268          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig17015.3932.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KZD3_9PHAE4.790e-1645.22Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KEC1_9PHAE6.070e-1644.35Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KQ63_9PHAE1.110e-1544.35Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JMM5_9PHAE1.230e-1544.35Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5KZE6_9PHAE1.450e-1544.35Endo/exonuclease/phosphatase domain-containing pro... [more]
A0A6H5KBZ6_9PHAE1.530e-1544.35Endo/exonuclease/phosphatase domain-containing pro... [more]
A0A6H5JGX2_9PHAE2.810e-1544.35Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L7A7_9PHAE2.810e-1544.35Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JVN7_9PHAE5.240e-1545.22Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KDU4_9PHAE7.090e-1540.98Reverse transcriptase domain-containing protein (F... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig17015contigH-paniculata_contig17015:1728..2102 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size375
Cds size375
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929346.2762127-CDS-H-paniculata_contig17015:1727..21021622929346.2762127-CDS-H-paniculata_contig17015:1727..2102Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17015 1728..2102 +
1691480824.2161136-CDS-H-paniculata_contig17015:1727..21021691480824.2161136-CDS-H-paniculata_contig17015:1727..2102Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17015 1728..2102 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig17015.3932.1prot_H-paniculata_contig17015.3932.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig17015 1728..2102 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig17015.3932.1

>prot_H-paniculata_contig17015.3932.1 ID=prot_H-paniculata_contig17015.3932.1|Name=mRNA_H-paniculata_contig17015.3932.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=125bp
MLFAKLHECDVIGLQETGRNGPISFCTPAVGYTIYCSGHSPGDKGKPWQM
GLGLAVKESIVRAGGPGGIVVTHTSARLMKIRIALTAKCVMTIVVGYAPT
EMAATRDKDQLWAALHATACAGIY*
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mRNA from alignment at H-paniculata_contig17015:1728..2102+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig17015.3932.1 ID=mRNA_H-paniculata_contig17015.3932.1|Name=mRNA_H-paniculata_contig17015.3932.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=375bp|location=Sequence derived from alignment at H-paniculata_contig17015:1728..2102+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCTGTTCGCAAAATTGCACGAGTGTGACGTCATTGGCCTACAGGAGAC CGGACGAAACGGACCGATATCCTTCTGCACCCCAGCCGTAGGATACACGA TCTACTGCAGCGGACACAGCCCCGGGGATAAGGGCAAACCTTGGCAAATG GGTCTGGGGCTGGCGGTGAAGGAGTCCATTGTGCGGGCGGGAGGGCCTGG CGGCATAGTGGTGACACATACCAGCGCCCGTCTGATGAAGATTCGCATCG CACTCACAGCCAAGTGCGTCATGACCATTGTCGTCGGATATGCTCCTACC GAGATGGCTGCCACGCGGGATAAGGACCAATTGTGGGCAGCGTTACATGC AACCGCTTGCGCAGGTATCTACTAA
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Coding sequence (CDS) from alignment at H-paniculata_contig17015:1728..2102+

>mRNA_H-paniculata_contig17015.3932.1 ID=mRNA_H-paniculata_contig17015.3932.1|Name=mRNA_H-paniculata_contig17015.3932.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=750bp|location=Sequence derived from alignment at H-paniculata_contig17015:1728..2102+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCTGTTCGCAAAATTGCACGAGTGTGACGTCATTGGCCTACAGGAGAC
CGGACGAAACGGACCGATATCCTTCTGCACCCCAGCCGTAGGATACACGA
TCTACTGCAGCGGACACAGCCCCGGGGATAAGGGCAAACCTTGGCAAATG
GGTCTGGGGCTGGCGGTGAAGGAGTCCATTGTGCGGGCGGGAGGGCCTGG
CGGCATAGTGGTGACACATACCAGCGCCCGTCTGATGAAGATTCGCATCG
CACTCACAGCCAAGTGCGTCATGACCATTGTCGTCGGATATGCTCCTACC
GAGATGGCTGCCACGCGGGATAAGGACCAATTGTGGGCAGCGTTACATGC
AACCGCTTGCGCAGGTATCTACTAAATGCTGTTCGCAAAATTGCACGAGT
GTGACGTCATTGGCCTACAGGAGACCGGACGAAACGGACCGATATCCTTC
TGCACCCCAGCCGTAGGATACACGATCTACTGCAGCGGACACAGCCCCGG
GGATAAGGGCAAACCTTGGCAAATGGGTCTGGGGCTGGCGGTGAAGGAGT
CCATTGTGCGGGCGGGAGGGCCTGGCGGCATAGTGGTGACACATACCAGC
GCCCGTCTGATGAAGATTCGCATCGCACTCACAGCCAAGTGCGTCATGAC
CATTGTCGTCGGATATGCTCCTACCGAGATGGCTGCCACGCGGGATAAGG
ACCAATTGTGGGCAGCGTTACATGCAACCGCTTGCGCAGGTATCTACTAA
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