mRNA_H-paniculata_contig17015.3932.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig17015.3932.1 vs. uniprot
Match: A0A6H5KZD3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZD3_9PHAE) HSP 1 Score: 82.8 bits (203), Expect = 4.790e-16 Identity = 52/115 (45.22%), Postives = 63/115 (54.78%), Query Frame = 1
Query: 25 CDVIGLQETGRNGPISFCTPAVGYTIYCSGHSPGDKGKPWQMGLGLAVKESIVRAGGPGGIVVTHTSARLMKIRIALTAKCVMTIVVGYAPTEMAAT------RDKDQLWAALHA 351
CDVIGLQET R G S GY I SG G K K G+G+A+KE++ + G G V S RLMK+R+ + CV+T VVGYAPTE T + KD W AL A
Sbjct: 12 CDVIGLQETRRAGQGSIAHD--GYVIIWSGARAGTKDKRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKVRMQIGHTCVVTFVVGYAPTETVRTTAGGNVKAKDSFWTALDA 124
BLAST of mRNA_H-paniculata_contig17015.3932.1 vs. uniprot
Match: A0A6H5KEC1_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEC1_9PHAE) HSP 1 Score: 82.8 bits (203), Expect = 6.070e-16 Identity = 51/115 (44.35%), Postives = 62/115 (53.91%), Query Frame = 1
Query: 25 CDVIGLQETGRNGPISFCTPAVGYTIYCSGHSPGDKGKPWQMGLGLAVKESIVRAGGPGGIVVTHTSARLMKIRIALTAKCVMTIVVGYAPTEMAATRD------KDQLWAALHA 351
CD+IGLQET R G S GY I SG G K K G+G+A+KE++ +GG G V S RLMK+R+ + C +T VVGYAPTE T KD W AL A
Sbjct: 12 CDMIGLQETRREGQGSIAHD--GYVIIWSGARAGTKDKRGVHGVGIAIKEAMWESGGEEGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPTETVRTTAGGGVDAKDSFWTALDA 124
BLAST of mRNA_H-paniculata_contig17015.3932.1 vs. uniprot
Match: A0A6H5KQ63_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQ63_9PHAE) HSP 1 Score: 81.6 bits (200), Expect = 1.110e-15 Identity = 51/115 (44.35%), Postives = 62/115 (53.91%), Query Frame = 1
Query: 25 CDVIGLQETGRNGPISFCTPAVGYTIYCSGHSPGDKGKPWQMGLGLAVKESIVRAGGPGGIVVTHTSARLMKIRIALTAKCVMTIVVGYAPTEMAAT------RDKDQLWAALHA 351
CDVIGLQET R G S GY SG G KGK G+G+A+KE++ ++ G G V S RLMK+R+ + C +T VVGYAPTE T KD W AL A
Sbjct: 12 CDVIGLQETRREGQGSIAHD--GYVFIWSGARAGTKGKWGVHGVGIAIKEAMWQSVGEEGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPTETVRTTAGGDVNAKDSFWTALDA 124
BLAST of mRNA_H-paniculata_contig17015.3932.1 vs. uniprot
Match: A0A6H5JMM5_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMM5_9PHAE) HSP 1 Score: 79.3 bits (194), Expect = 1.230e-15 Identity = 51/115 (44.35%), Postives = 60/115 (52.17%), Query Frame = 1
Query: 25 CDVIGLQETGRNGPISFCTPAVGYTIYCSGHSPGDKGKPWQMGLGLAVKESIVRAGGPGGIVVTHTSARLMKIRIALTAKCVMTIVVGYAPTEMAAT------RDKDQLWAALHA 351
CDVIGLQET R G S GY I SG G K K G+G A+KE++ + G G V S RLMK+R+ + C +T VVGYAPTE T KD W AL A
Sbjct: 12 CDVIGLQETRREGQGSIAHD--GYVIIWSGARAGTKDKRGVHGVGRAIKEAMWESVGEEGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPTETVRTTAGGDVNAKDSFWTALDA 124
BLAST of mRNA_H-paniculata_contig17015.3932.1 vs. uniprot
Match: A0A6H5KZE6_9PHAE (Endo/exonuclease/phosphatase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZE6_9PHAE) HSP 1 Score: 80.5 bits (197), Expect = 1.450e-15 Identity = 51/115 (44.35%), Postives = 61/115 (53.04%), Query Frame = 1
Query: 25 CDVIGLQETGRNGPISFCTPAVGYTIYCSGHSPGDKGKPWQMGLGLAVKESIVRAGGPGGIVVTHTSARLMKIRIALTAKCVMTIVVGYAPTEMAAT------RDKDQLWAALHA 351
CDVIGLQET R G S GY I SG G K K G+G+A+KE+I + G G V S RLMK+R+ + C +T VVGYAPTE + KD W AL A
Sbjct: 43 CDVIGLQETRREGQGSIAHD--GYVIIWSGARAGTKDKRGGHGVGIAIKEAIWESVGEEGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPTETVRSTAGGDVNAKDSFWTALDA 155
BLAST of mRNA_H-paniculata_contig17015.3932.1 vs. uniprot
Match: A0A6H5KBZ6_9PHAE (Endo/exonuclease/phosphatase domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBZ6_9PHAE) HSP 1 Score: 80.9 bits (198), Expect = 1.530e-15 Identity = 51/115 (44.35%), Postives = 61/115 (53.04%), Query Frame = 1
Query: 25 CDVIGLQETGRNGPISFCTPAVGYTIYCSGHSPGDKGKPWQMGLGLAVKESIVRAGGPGGIVVTHTSARLMKIRIALTAKCVMTIVVGYAPTEMAAT------RDKDQLWAALHA 351
CDVIGLQET R G S GY I SG G K K G+G+A+KE++ + G G V S RLMK+R+ + C +T VVGYAPTE T KD W AL A
Sbjct: 12 CDVIGLQETRREGQGSIAHD--GYVIIWSGARAGTKDKRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPTETVRTTAGGDVNAKDSFWTALDA 124
BLAST of mRNA_H-paniculata_contig17015.3932.1 vs. uniprot
Match: A0A6H5JGX2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGX2_9PHAE) HSP 1 Score: 80.9 bits (198), Expect = 2.810e-15 Identity = 51/115 (44.35%), Postives = 61/115 (53.04%), Query Frame = 1
Query: 25 CDVIGLQETGRNGPISFCTPAVGYTIYCSGHSPGDKGKPWQMGLGLAVKESIVRAGGPGGIVVTHTSARLMKIRIALTAKCVMTIVVGYAPTEMAAT------RDKDQLWAALHA 351
CDVIGLQET R G S GY I SG G K K G+G+A+KE++ + G G V S RLMK+R+ + C +T VVGYAPTE T KD W AL A
Sbjct: 93 CDVIGLQETRREGQGSIAHD--GYVIIWSGARAGTKDKRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPTETVRTTAGGDVNAKDSFWTALDA 205
BLAST of mRNA_H-paniculata_contig17015.3932.1 vs. uniprot
Match: A0A6H5L7A7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7A7_9PHAE) HSP 1 Score: 80.9 bits (198), Expect = 2.810e-15 Identity = 51/115 (44.35%), Postives = 61/115 (53.04%), Query Frame = 1
Query: 25 CDVIGLQETGRNGPISFCTPAVGYTIYCSGHSPGDKGKPWQMGLGLAVKESIVRAGGPGGIVVTHTSARLMKIRIALTAKCVMTIVVGYAPTEMAAT------RDKDQLWAALHA 351
CDVIGLQET R G S GY I SG G K K G+G+A+KE++ + G G V S RLMK+R+ + C +T VVGYAPTE T KD W AL A
Sbjct: 12 CDVIGLQETRREGQGSIAHD--GYVIIWSGARAGTKDKRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPTETVRTTAGGDVNAKDSFWTALDA 124
BLAST of mRNA_H-paniculata_contig17015.3932.1 vs. uniprot
Match: A0A6H5JVN7_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVN7_9PHAE) HSP 1 Score: 80.1 bits (196), Expect = 5.240e-15 Identity = 52/115 (45.22%), Postives = 63/115 (54.78%), Query Frame = 1
Query: 25 CDVIGLQETGRNGPISFCTPAVGYTIYCSGHSPGDKGKPWQMGLGLAVKESIVRAGGPGGIVVTHTSARLMKIRIALTAKCVMTIVVGYAPTE---MAATRD---KDQLWAALHA 351
CDVIGLQET R G S GY I SG G K K + G+G+A+KE++ G G V S RLMK+R+ + C +T VVGYAPTE + A D KD W AL A
Sbjct: 189 CDVIGLQETRREGQGSIAHD--GYVIIWSGARAGTKDKRGEQGVGIAIKEAMWETVGEEGRKVECISPRLMKVRLQIGRTCGVTFVVGYAPTETVRITAGGDVNAKDSFWTALDA 301
BLAST of mRNA_H-paniculata_contig17015.3932.1 vs. uniprot
Match: A0A6H5KDU4_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDU4_9PHAE) HSP 1 Score: 79.7 bits (195), Expect = 7.090e-15 Identity = 50/122 (40.98%), Postives = 63/122 (51.64%), Query Frame = 1
Query: 1 MLFAKLHECDVIGLQETGRNGPISFCTPAVGYTIYCSGHSPGDKGKPWQMGLGLAVKESIVRAGGPGGIVVTHTSARLMKIRIALTAKCVMTIVVGYAPTEMAATRD-----KDQLWAALHA 351
M + CDVIGLQET R G S GY + SG G K K G+G+A+KE++ + G G V S RLMK+R+ + C +T VVGYAP + T KD LW AL A
Sbjct: 149 MQICSTNGCDVIGLQETRREGQGSIAHD--GYVVIWSGARAGTKDKRGVHGVGIAIKEAMWDSAGEEGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPRTVRTTAGGDVNAKDSLWTALDA 268 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig17015.3932.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig17015.3932.1 >prot_H-paniculata_contig17015.3932.1 ID=prot_H-paniculata_contig17015.3932.1|Name=mRNA_H-paniculata_contig17015.3932.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=125bp MLFAKLHECDVIGLQETGRNGPISFCTPAVGYTIYCSGHSPGDKGKPWQMback to top mRNA from alignment at H-paniculata_contig17015:1728..2102+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig17015.3932.1 ID=mRNA_H-paniculata_contig17015.3932.1|Name=mRNA_H-paniculata_contig17015.3932.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=375bp|location=Sequence derived from alignment at H-paniculata_contig17015:1728..2102+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig17015:1728..2102+ >mRNA_H-paniculata_contig17015.3932.1 ID=mRNA_H-paniculata_contig17015.3932.1|Name=mRNA_H-paniculata_contig17015.3932.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=750bp|location=Sequence derived from alignment at H-paniculata_contig17015:1728..2102+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |