mRNA_H-paniculata_contig170.3927.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig170.3927.1 vs. uniprot
Match: D7FIT6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIT6_ECTSI) HSP 1 Score: 131 bits (330), Expect = 6.110e-27 Identity = 123/389 (31.62%), Postives = 173/389 (44.47%), Query Frame = 3
Query: 519 LIMRLARLDSDYTSEFAGFATGLLAASQIRR-QCNATRPHRP----------------------LGWRRGVGLTMALGFGNVVIIHAGLWTLSAFLGADADTAGMVVAGGVI---------EGGGVGEGEEVVRLTS--------MVTAFVAAWVCYAVTGLPGALQLYDLRLVRLPLAVLAELLRASYVCAASGLVLALLP---DISGLGLVDDGVDDRNLGNLGE-------ILVIPLLRLLAATLAGAAVSAMGG-------------GQL----------AFIPHSGQTPQAHPAATADLVDGSREMETAGHNGEGRGEGGAAEGEWWFVRSGGFGGALYAVACGSVFEGIVRKYLLGDEWFASPRSVHASLGVLFSMVWVVRDV 1466
L+ +++ LD + E A ATGL+AA+Q+R+ Q RP L W +GV T A +G ++I+ G W L L + T + G + GGG GEG+ +T+ + A AA VCY +TG QL RL+R+PL + AELLRAS V A+S + LAL+ +S L + R E LV+ L LA AGAAVS +GG G+L A P G + ++A V RE GE + AA W V SG GG YA+ G VF G++R+YLLG EWF+SP SV +L ++F+ V+++R +
Sbjct: 26 LLCKISTLDFGHAVEMAVVATGLIAATQLRKWQRRQQRPFASGTVSADPRTDLSSRYRYCCEVALHWLKGVVWTWAYAYGGLIIVRVGRWALLLLLAWSSSTRALGETGKLTPEGSYWPWGRGGGGGEGDRWAAVTTSDDSLAVTLAVALGAAAVCYTLTGASSVRQLLWHRLLRVPLGLAAELLRASCVAASSEIALALVSWGFSVSSPSLAFPYKEGREETASAEGTRAFALTLVLGFLGALACAFAGAAVSCVGGSVGXXXXXEEGRRGRLERTASSATNAAEPPTGGGSRSRTGTSSAVNVAAGREAGPGRREGESQRVTAAAA---WLVPSGALGGVFYALTSGGVFRGVMREYLLGAEWFSSPDSVRMALAMVFAAVYLLRSL 411 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig170.3927.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 1
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig170.3927.1 >prot_H-paniculata_contig170.3927.1 ID=prot_H-paniculata_contig170.3927.1|Name=mRNA_H-paniculata_contig170.3927.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=1071bp MEGTRSLESSSGGSSSSRVLWDQAVAEAELLSSSPSSASFATIGAMELIMback to top mRNA from alignment at H-paniculata_contig170:948..26365+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig170.3927.1 ID=mRNA_H-paniculata_contig170.3927.1|Name=mRNA_H-paniculata_contig170.3927.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=25418bp|location=Sequence derived from alignment at H-paniculata_contig170:948..26365+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig170:948..26365+ >mRNA_H-paniculata_contig170.3927.1 ID=mRNA_H-paniculata_contig170.3927.1|Name=mRNA_H-paniculata_contig170.3927.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=6426bp|location=Sequence derived from alignment at H-paniculata_contig170:948..26365+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |