mRNA_H-paniculata_contig17.3921.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig17.3921.1
Unique NamemRNA_H-paniculata_contig17.3921.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig17.3921.1 vs. uniprot
Match: D7FN63_ECTSI (Mdm2, transformed 3T3 cell double minute 2, p53 binding protein (Mouse), isoform CRA_c n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FN63_ECTSI)

HSP 1 Score: 120 bits (301), Expect = 2.670e-28
Identity = 72/168 (42.86%), Postives = 96/168 (57.14%), Query Frame = 1 
Query:   10 ASLSHWWLHMYDDPSVVEQEDEYRELLGKSDVRSNIDFCDIVRSWVTVLHGKDMLATHRRRSAMDKGACNCVGQGAAAPYGCSAGLAVAVAKLGVQFSWQEKATAQNILMKSGIVRDSLVRVTRAILAGDRCRAGAVHEVSHQLMHAVQQGLTWPDEFFIGQALAAQG 513
             SL  WW     +   V+ E  YRELL K+D  S  +   +V+  ++ L  ++ +A  RRR+   KGA +C G      + CS  LAVA  KL  + S QE A  + IL KSG++RDSLVR  R +LA D  +A  V EVSH+L HA   GL WPDE  IG+AL ++G
Sbjct:  398 VSLVLWWYSPPKEAPSVQTEKRYRELLEKTDPESKEELAKLVKELISNLRHQNEMAMERRRNIKTKGARDCFGGRRVCAHACSGALAVAAVKLKRKASSQEMAHIKLILAKSGVIRDSLVRTARFLLATDPTKA--VAEVSHELFHAAYDGLIWPDEPLIGKALQSEG 563
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig17.3921.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FN63_ECTSI2.670e-2842.86Mdm2, transformed 3T3 cell double minute 2, p53 bi... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig17contigH-paniculata_contig17:20386..22439 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons5
Model size543
Cds size540
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig17.3921.1prot_H-paniculata_contig17.3921.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig17 20386..22438 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929344.4091523-CDS-H-paniculata_contig17:20385..204541622929344.4091523-CDS-H-paniculata_contig17:20385..20454Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17 20386..20454 +
1691480823.3947694-CDS-H-paniculata_contig17:20385..204541691480823.3947694-CDS-H-paniculata_contig17:20385..20454Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17 20386..20454 +
1622929344.4199455-CDS-H-paniculata_contig17:20873..210121622929344.4199455-CDS-H-paniculata_contig17:20873..21012Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17 20874..21012 +
1691480823.404811-CDS-H-paniculata_contig17:20873..210121691480823.404811-CDS-H-paniculata_contig17:20873..21012Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17 20874..21012 +
1622929344.4312866-CDS-H-paniculata_contig17:21294..214521622929344.4312866-CDS-H-paniculata_contig17:21294..21452Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17 21295..21452 +
1691480823.4121666-CDS-H-paniculata_contig17:21294..214521691480823.4121666-CDS-H-paniculata_contig17:21294..21452Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17 21295..21452 +
1622929344.445683-CDS-H-paniculata_contig17:21760..219041622929344.445683-CDS-H-paniculata_contig17:21760..21904Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17 21761..21904 +
1691480823.4194946-CDS-H-paniculata_contig17:21760..219041691480823.4194946-CDS-H-paniculata_contig17:21760..21904Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17 21761..21904 +
1622929344.4617689-CDS-H-paniculata_contig17:22408..224381622929344.4617689-CDS-H-paniculata_contig17:22408..22438Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17 22409..22438 +
1691480823.4273112-CDS-H-paniculata_contig17:22408..224381691480823.4273112-CDS-H-paniculata_contig17:22408..22438Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17 22409..22438 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig17.3921.1

>prot_H-paniculata_contig17.3921.1 ID=prot_H-paniculata_contig17.3921.1|Name=mRNA_H-paniculata_contig17.3921.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=180bp
RFVASLSHWWLHMYDDPSVVEQEDEYRELLGKSDVRSNIDFCDIVRSWVT
VLHGKDMLATHRRRSAMDKGACNCVGQGAAAPYGCSAGLAVAVAKLGVQF
SWQEKATAQNILMKSGIVRDSLVRVTRAILAGDRCRAGAVHEVSHQLMHA
VQQGLTWPDEFFIGQALAAQGVLLLLSYTR
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mRNA from alignment at H-paniculata_contig17:20386..22439+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig17.3921.1 ID=mRNA_H-paniculata_contig17.3921.1|Name=mRNA_H-paniculata_contig17.3921.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2054bp|location=Sequence derived from alignment at H-paniculata_contig17:20386..22439+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGCTTTGTGGCAAGTCTATCACATTGGTGGTTACACATGTACGACGATCC
CTCGGTTGTCGAGCAAGAGGTGAGCGAACCGAACCTGCCCACCTTTCGCG
TGTTTTTTTTTTAATGCATAAGCTCTTTTACCCTTATACCGTGTTACCCT
GTTACCATCGGGATGGCGAGTCTTGTCAAGTCTTGTTTCTGGCCGACAAG
GATCAACTCTCCGGCGTCATGTATGTTGTCAACGGCCTCATGTTCCCGCG
TGTCTAAATAGCGAGCACCGAAGGTATCACTCCAATTTGTTGAAACGTGT
GGTGTATGGTGCGTCTATTTCAAATTAAATTCTCTTCTTTTTTGCGTTGG
GGACAAGCACTCTATATGACTACGAGTGATATGTGGCATCGTGCCTCCAG
CCTCTGCGTATATCGTTTCAAGTGTATGACAGTAAGCGTATGACACGGCG
CTGATCTTGGCAATTTTTCGCCTTCGTATTGGTGCCAGGATGAGTATCGA
GAGCTGTTGGGCAAAAGTGACGTAAGATCGAATATTGATTTCTGCGATAT
TGTTCGCTCATGGGTCACCGTACTTCACGGCAAAGACATGTTGGCCACGC
ATCGTCGACGAAGCGCCATGGACAAAGGTACGTGTGTATGCGAGAAGATA
GTTTTTATATTTTGGCCGTGTAAAGTGGACAATTCTCGCAAGGGTGGGTC
TCTTGCTTCTTTTCTGTTACTTAGTTATGTTATGCAGCTTTGTTCCGCAA
CAAAACGCTCTCGCTCTGTCGCTAACTTCTACTCGTTCTACAGTCACTAC
AAATACATCCAAAAGAGCATGCGCTGTAACGCCGCGATGTTAATGCGCAT
TTTACTCTTTTTCGTTTTGCTTGTCGCATCCCCCGCTGCCCCGCTGTGGT
GGGTGGAAGGTGCATGCAATTGTGTCGGCCAGGGTGCTGCCGCACCTTAT
GGCTGTTCTGCTGGGCTCGCGGTAGCTGTCGCAAAACTTGGAGTGCAATT
TTCATGGCAAGAGAAAGCAACTGCCCAAAACATTCTAATGAAAAGCGGCA
TCGTTCGCGATAGCTTGGTGAGCCTTTCGACAAGGATGACAACGCCTTTC
GTGCGCCCCCGCAAATAACGATTTGCTTTAAAAAAAATGATCGCAGAACT
CATGTTTTTGATCGTAATAGCGGTAGGTGTAGAAGACGGCATTGTTTCGT
CGCCGAATTCGAAAATGCTGGACGACGTCCCCTTGAAACTTAGCTATATA
CAAGACGTCAGATATGACTTGGACCACGTGAAAGAGTTGTAACCTACAGG
CGCTCATTCCCCCCCCCCCCCCCTCCCCCCCGCGTGTCCCTGTGTGCGTA
CGTTTTTCGGGCGCCTACTTTTCAGGTAAGAGTGACTCGCGCAATTCTCG
CAGGGGATCGTTGTCGTGCAGGTGCTGTGCATGAAGTTTCTCATCAACTA
ATGCATGCCGTTCAGCAGGGCTTGACGTGGCCAGATGAGTTCTTCATTGG
CCAAGCATTGGCAGCTCAGGTGCGCCAAGAGTAGCAGTAGCGGTCGTATG
ATGCAACATGGATGGTACCTTAGTCTAGTTTTATTGCTGGCTTTTGGCTG
GCTTGCGTTGCATTGAACCGTTTGCGCGTCACAACAATGCGGCTCTTCGT
TACCGTTCTGTATAGCGTATTGGTTAGCTATGTGTGCATTGGAAAGTCTG
CTGTATCATAGTAGTATCATAGTAGTATCTATTGAATATCATTCTGAGAA
TTCTGGTTGTTTCTCGTTGGCTTTGGCTGTCCCTGAACCTAAACGTTGCT
GTTGTATCGCTTGTGCGATGCGTGTACCCTCGCTGAGGTATTTATCTAAA
TGTTACGAGCACGCAATTCTCGCAAGAATGCCCTGTGCTTGTGCCTTGGC
GTGGTCGCCCAAGCGCTTTTGTTCGTTAGAAGTGCGAATAGGTTTCGTTG
GAGTTGGATTTAGTTTTAGTATGGCAAAACGCTCTATGTATATCTACAAT
GGTGCTTATCCTCTATTTGATAGGGGGTTTTGTTGCTGCTATCTTATACG
CGGA
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Coding sequence (CDS) from alignment at H-paniculata_contig17:20386..22439+

>mRNA_H-paniculata_contig17.3921.1 ID=mRNA_H-paniculata_contig17.3921.1|Name=mRNA_H-paniculata_contig17.3921.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1080bp|location=Sequence derived from alignment at H-paniculata_contig17:20386..22439+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGCTTTGTGGCAAGTCTATCACATTGGTGGTTACACATGTACGACGATCC
CTCGGTTGTCGAGCAAGAGCGCTTTGTGGCAAGTCTATCACATTGGTGGT
TACACATGTACGACGATCCCTCGGTTGTCGAGCAAGAGGATGAGTATCGA
GAGCTGTTGGGCAAAAGTGACGTAAGATCGAATATTGATTTCTGCGATAT
TGTTCGCTCATGGGTCACCGTACTTCACGGCAAAGACATGTTGGCCACGC
ATCGTCGACGAAGCGCCATGGACAAAGGATGAGTATCGAGAGCTGTTGGG
CAAAAGTGACGTAAGATCGAATATTGATTTCTGCGATATTGTTCGCTCAT
GGGTCACCGTACTTCACGGCAAAGACATGTTGGCCACGCATCGTCGACGA
AGCGCCATGGACAAAGGTGCATGCAATTGTGTCGGCCAGGGTGCTGCCGC
ACCTTATGGCTGTTCTGCTGGGCTCGCGGTAGCTGTCGCAAAACTTGGAG
TGCAATTTTCATGGCAAGAGAAAGCAACTGCCCAAAACATTCTAATGAAA
AGCGGCATCGTTCGCGATAGCTTGGTGCATGCAATTGTGTCGGCCAGGGT
GCTGCCGCACCTTATGGCTGTTCTGCTGGGCTCGCGGTAGCTGTCGCAAA
ACTTGGAGTGCAATTTTCATGGCAAGAGAAAGCAACTGCCCAAAACATTC
TAATGAAAAGCGGCATCGTTCGCGATAGCTTGGTAAGAGTGACTCGCGCA
ATTCTCGCAGGGGATCGTTGTCGTGCAGGTGCTGTGCATGAAGTTTCTCA
TCAACTAATGCATGCCGTTCAGCAGGGCTTGACGTGGCCAGATGAGTTCT
TCATTGGCCAAGCATTGGCAGCTCAGGTAAGAGTGACTCGCGCAATTCTC
GCAGGGGATCGTTGTCGTGCAGGTGCTGTGCATGAAGTTTCTCATCAACT
AATGCATGCCGTTCAGCAGGGCTTGACGTGGCCAGATGAGTTCTTCATTG
GCCAAGCATTGGCAGCTCAGGGGGTTTTGTTGCTGCTATCTTATACGCGG
GGGGTTTTGTTGCTGCTATCTTATACGCGG
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