mRNA_H-paniculata_contig16972.3903.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig16972.3903.1
Unique NamemRNA_H-paniculata_contig16972.3903.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig16972.3903.1 vs. uniprot
Match: A0A6D2IM54_9BRAS (Uncharacterized protein n=2 Tax=Microthlaspi erraticum TaxID=1685480 RepID=A0A6D2IM54_9BRAS)

HSP 1 Score: 477 bits (1227), Expect = 3.440e-146
Identity = 325/967 (33.61%), Postives = 494/967 (51.09%), Query Frame = 1
Query:   34 LLHERLGHVRD--LHTIAQQQGIK------FHGKLGVCSACERGKASKQPVKKYREEQTMERLELVHTDIAGPV-DKSFEGRHFAIIFVRDYSRMRKVYALRKKSEVLRALKQFERDIAKANGLQIKRLRSDQGGQFTGEVFHQFYAENGIKQNVSAAYTPQQNGVAERSWLSVFEMTRSKMITVNLGRRYWAEAARAPVYCLNRAPTRPQNGGTPCEKWHGSIPKLDHLRVVGCMAYVMFQSQQRRKLDDKAWAEVFLGYDKDNPSYRIYNPENKSVQLSRNVRFDE-----------------EDFVTGHRGQQEHDGTREMEDICSTPPVTPAVTRSRARGEQACVKNTEDRTSASQMPPILPTYSLPAASANPFTRGRRRAIS---RDSGTRVAGEHYEAVRDGSAASARSVTNTNTGESEGKPRRRSRHYRARVAKVKDTGNFTEAVSKGMPKSTAEALKGPEAEKWRAEMKGEWGALVGNGTRESEDTGRLSAGRKAIHTKWIFKRKLKEDGSAAHYKARLVAQGFSQVEGEDLFETSAPIARMSTLHTVFRLAAEHDFELEGMNIDAAYLNAPVEEEL----------------VRRLRKSLYGLKQSGRNWNDTLDNFLVGIGLERSTTDSCLYFSRDDGGEADLLVAVYVDDLVIAG-SREKTDEFKHNIIQHFRMKDLGFLSRVLGIQVRRDRPNGTIAIS*VSYIREVLKRYGFDQCRGVPTPVEGKVKISAPESADKPSEPKSGNSTEYRGMVGSLMYASTETRPDTAYVVHQAARRMEDPCREDFSTCKRIFRYLSTVPDLGITFGGKSNSHGPE---GFVDVDLAENIEDRKSITGYFFKLNGGAISWCSRK*QLVTWSSTEAEYVAAGEAGNETVYLGDFLGSIRFGCKGNTTFV*DNKSVINLTKGYGTHCRTKHIGVRWHGIREWIQEGVLALKYVQTGDHLADILTKGL 2787
            L H+RLGH+    + ++ +++ +        +G  G+C  C RGK +++ + K    +    L+LVHTDI GP+   S  G+ + I F+ DYSR    + L +KSE LRA K+F+    +  GL +  LRSD+GG++    F  +  ENGIK+ ++AAYTPQQNG+AER   S+  M R  M+ +++ RR+W EA +  V+ LNR+P+      TP E+W    P ++H+RV GC+AY +   ++R KLD+K+   VF+G  K++ +YR+YNPE K + +SR+VRFDE                 E+ +T        +   E E +     V P    +     QA  + T D+T A++                  T GR+R      +D  +  AGE    V D   A     T                         +D   F EAV               ++EKWR  M+ E G++  N T E  +     A  K I  KWIFK K  E G    +KARLVA+G+ Q +G D  E  AP+AR  T+  +   AA++ +++  +++ +A+L+  +EE++                V +LRK+LYGL+Q+ R W   ++ +    G  +   +  L+   +   E  L+V++YVDDL+  G S E  +EFK ++++ F M DLG +   LG++V +D     I I+   Y  E+L+++G +    V  P+    K+S  E + + ++P     T ++ ++GSL Y  T TRPD  Y V+  +R ME P  E     KRI RY+    D GI +      +G E   GFVD D A + +DRKS +GY F ++GGAISW S+K  +VT S+TEAE+VAA     + V+L + L  IR      T    DN S I L+K    H R+KHI VR+H +R+ + EG + L Y  T D LAD +TK +
Sbjct:  437 LWHKRLGHLSHSGMQSLVEKKMVNGLPQLSHNGDGGLCDICMRGKQNRENIPKKSSWRASRALQLVHTDICGPIAPTSASGKRYIINFIDDYSRKCWSFLLAEKSEALRAFKEFKVAAEREMGLSLVSLRSDRGGEYNSAAFQDYCRENGIKRQLTAAYTPQQNGIAERKNRSIMNMARCMMLGMSVPRRFWPEAVQYAVHVLNRSPSAALGDVTPDERWSNHKPSVEHVRVFGCVAYALVPYERRVKLDEKSIQCVFVGVSKESKAYRLYNPETKKIIISRDVRFDESRKWDWEESALDDGVRWEEALTNSEAGDSGENNGEEETLNQPEEVDPENVNAPTEVTQA--ETTTDQTVAARE-----------------TSGRQRQTPVWMKDYVSGTAGEASFFVIDDDEALMMYTT------------------------AEDPDTFEEAV---------------KSEKWRKAMEAEIGSIEENQTWELVEP---PAEAKVIGVKWIFKTKFNEKGEVDKFKARLVAKGYHQRQGVDFHEVFAPVARWDTIRAILAKAAQNSWKVYQLDVKSAFLHGNLEEDVYIEQPLGFEVAGEAEKVYKLRKALYGLRQAPRAWYSRIEGYFEKEGFAKCYCEHTLFVKTEK--EKILIVSLYVDDLIYTGNSVELLEEFKASMMREFSMTDLGLMKFFLGVEVVQDGYG--IFINQQKYAVEILEKFGMENSNSVRNPIVPGQKLSK-EGSGETADP-----TTFKQLIGSLRYL-TATRPDLIYSVNLVSRFMEKPYEEHMLAAKRILRYVKGTTDFGIRY----KHNGEEKLVGFVDSDYAGDSDDRKSTSGYVFMMSGGAISWASKKQAIVTLSTTEAEFVAAAYGACQGVWLRNVLEEIRATQTEGTILYCDNSSTIKLSKNPVMHGRSKHIHVRYHFLRDLVNEGTIQLDYCPTQDQLADFMTKAV 1327          
BLAST of mRNA_H-paniculata_contig16972.3903.1 vs. uniprot
Match: A0A0K8WJW9_BACLA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=2 Tax=Bactrocera latifrons TaxID=174628 RepID=A0A0K8WJW9_BACLA)

HSP 1 Score: 472 bits (1215), Expect = 1.040e-145
Identity = 315/947 (33.26%), Postives = 473/947 (49.95%), Query Frame = 1
Query:   28 IKLLHERLGHV--RDLHTIAQQQ---GIKFHG--KLGVCSACERGKASKQPVKKYREEQTMERLELVHTDIAGPVD-KSFEGRHFAIIFVRDYSRMRKVYALRKKSEVLRALKQFERDIAKANGLQIKRLRSDQGGQFTGEVFHQFYAENGIKQNVSAAYTPQQNGVAERSWLSVFEMTRSKMITVNLGRRYWAEAARAPVYCLNRAPTRPQNGGTPCEKWHGSIPKLDHLRVVGCMAYVMFQSQQRRKLDDKAWAEVFLGYDKDNPSYRIYNPENKSVQLSRNVRFDEEDFVTGHRGQQEHDGTREMEDI-CSTPPVTPAVTRSRARGEQACVKNTEDRTSASQMPPILPTYSLPAASANPFTRGRRRAISRDSGTRVAGEHYEAVRDGSAASARSVTNTNTGESEGKPRRRSRHYRARVAKVKDTGNFTEAVSKGMPKSTAEALKGPEAEKWRAEMKGEWGALVGNGTRESEDTGRLSAGRKAIHTKWIFKRKLKEDGSAAHYKARLVAQGFSQVEGEDLFETSAPIARMSTLHTVFRLAAEHDFELEGMNIDAAYLNAPVEE----------------ELVRRLRKSLYGLKQSGRNWNDTLDNFLVGIGLERSTTDSCLYFSRDDGGEADLLVAVYVDDLVI-AGSREKTDEFKHNIIQHFRMKDLGFLSRVLGIQVRRDRPNGTIAIS*VSYIREVLKRYGFDQCRGVPTPVEGKVKISAPESADKPSEPKSGNSTEYRGMVGSLMYASTETRPDTAYVVHQAARRMEDPCREDFSTCKRIFRYLSTVPDLGITFGGKSNSHGPEGFVDVDLAENIEDRKSITGYFFKLNGGAISWCSRK*QLVTWSSTEAEYVAAGEAGNETVYLGDFLGSIRFGCKGNTTFV*DNKSVINLTKGYGTHCRTKHIGVRWHGIREWIQEGVLALKYVQTGDHLADILTKGLS 2790
            + + H R GH+  ++L  +++++   G+K  G  K   C  C + K    P  +  E  T + LELVHTD+ GP++ KS  G  F + F+ D+SR   VY ++ KSEV +  + F+  +      +IK +RSD G ++    F  F    GIK+ ++  YTPQQNGVAER+  ++ EM +S +I  NLG+  WAEA +  VY  NR PT+  N  TP E W    P + HLR+ G  A+ + ++  + K D K    +F+GY     +YR+Y+ + + +   R+V+F E +F T          T E+    C+    T  +       EQ+  +N  +R   +    +        AS +   +              + E  E  + G        T        G+P R  +H++          N         P+S  EAL G  A +WR  M+ E+ AL+ N T    D   L  G+KAI +KW+++ K    G+   +K+RLVA+G  Q  G + +ET +P+ R  T+  +F +AAE +  +  ++I  AYLN+ +EE                E V +L+K++YGLKQSGR WN TLD  L  IG +R   + CLY + ++  +    +AVYVDDL+I   S  +  E K  I   F+M D G +S  LG++++R    G I++    YIR V+  +G   CR   TP++   ++      DK       N+TEY+ ++GSLMY +  +RPD  + V + +R   DP  E  +  K I RYLS   D+ I +         +GF D D A +  DRKS TGY F L G + SW S K  +   SSTEAEYVA   A  E +YL   L  I +      T   DN S  ++ +    H RTKHI +++H IRE ++   + LKYV T  ++ADILTK LS
Sbjct:  290 VTMWHNRYGHLNFKNLSELSEKELVHGMKLKGIPKQVNCDTCNKAKICALPFVQKTERSTKKVLELVHTDVCGPMNVKSLGGNRFFVTFIDDFSRKTFVYFMKAKSEVFKKFRNFKSFVECQMDCKIKAIRSDNGKEYINSEFDNFLKNCGIKRELTVPYTPQQNGVAERANRTIVEMAKSLLIHANLGQFLWAEAVQTAVYLRNRCPTKALNSRTPFEVWKQRKPSVKHLRIFGSRAFALDKTN-KGKFDAKGREYIFVGYSNTAKAYRLYDQQRRIIVERRDVKFIEGEFNTSI--------TSEISSSQCNGDFATNIIRLKSPENEQSATENVGEREMKNDFEDLNEEDEFATASDSEAEQSA-----------TSSEQDELPKRGRGRPKYIRT--------GQPGRPKKHFQLL--------NVNSTEDDETPQSPTEALSGQHAVEWRKSMQLEYDALIANNTWSLVD---LPKGQKAIGSKWVYRIKRDASGNINKFKSRLVAKGCGQQLGVNYWETFSPVIRYETIRMLFAIAAEKELYMHHIDISNAYLNSKLEENIFMKQPEGFISKKYPEKVLKLQKAIYGLKQSGRVWNTTLDAVLTSIGFKRCRHEPCLYVNNNN--QQYSYIAVYVDDLIIICPSENEIAEIKKKITAKFQMHDYGTVSDFLGLEIQRKGEKGAISLHQKKYIRAVIDSFGMQNCRATATPLDPGFQVGC---TDKNCVKV--NATEYQSLIGSLMYLAVLSRPDILHAVSKLSRHNTDPHIEHEAAAKHILRYLSGTIDMSIEYC--KTGEDVKGFADADWANDSSDRKSYTGYAFYLGGSSFSWSSTKQNITALSSTEAEYVALAMAAKEAIYLSRLLSEIGWSSSTPITLYGDNISAQHIARNPIHHKRTKHIDIKYHFIREKVENNEINLKYVSTDKNVADILTKSLS 1188          
BLAST of mRNA_H-paniculata_contig16972.3903.1 vs. uniprot
Match: A0A4Y1RID3_PRUDU (Toll-Interleukin-Resistance domain family protein n=7 Tax=Prunus dulcis TaxID=3755 RepID=A0A4Y1RID3_PRUDU)

HSP 1 Score: 462 bits (1189), Expect = 3.810e-145
Identity = 306/938 (32.62%), Postives = 458/938 (48.83%), Query Frame = 1
Query:   40 HERLGHVRD-----LHTIAQQQGIKFHGKLGVCSACERGKASKQPVKKYREEQTMERLELVHTDIAGPVD-KSFEGRHFAIIFVRDYSRMRKVYALRKKSEVLRALKQFERDIAKANGLQIKRLRSDQGGQFTGEVFHQFYAENGIKQNVSAAYTPQQNGVAERSWLSVFEMTRSKMITVNLGRRYWAEAARAPVYCLNRAPTRPQNGGTPCEKWHGSIPKLDHLRVVGCMAYVMFQSQQRRKLDDKAWAEVFLGYDKDNPSYRIYNPENKSVQLSRNVRFDEEDFVTGHRGQQEHDGTREMEDICSTPPVTPA-VTRSRARGEQACVKNTEDRTSASQMPPILPTYSLPAASANPFTRGRRRAISRDSGTRVAGEHYEAVRDGSAASARSVTNTNTGESEGKPRRRSRHYRARVAKVKDTGNFTEAVSKGMPKSTAEALKGPEAEKWRAEMKGEWGALVGNGTRESEDTGRLSAGRKAIHTKWIFKRKLKEDGSAAHYKARLVAQGFSQVEGEDLFETSAPIARMSTLHTVFRLAAEHDFELEGMNIDAAYLNAPVEEEL----------------VRRLRKSLYGLKQSGRNWNDTLDNFLVGIGLERSTTDSCLYFSRDDGGEADLLVAVYVDDLVIAGS-REKTDEFKHNIIQHFRMKDLGFLSRVLGIQVRRDRPNGTIAIS*VSYIREVLKRYGFDQCRGVPTPVEGKVKISAPESADKPSEPKSGNSTEYRGMVGSLMYASTETRPDTAYVVHQAARRMEDPCREDFSTCKRIFRYLSTVPDLGITFGGKSNSHGPEGFVDVDLAENIEDRKSITGYFFKLNGGAISWCSRK*QLVTWSSTEAEYVAAGEAGNETVYLGDFLGSIRFGCKGNTTFV*DNKSVINLTKGYGTHCRTKHIGVRWHGIREWIQEGVLALKYVQTGDHLADILTK 2781
            H+RLGH+ +     +H+  +  G++  G + +C  C  GK  +   +        ERLELVH+D+ GP    S  G+H+ + F+ D+SR   VY L+ KSEV    K+++  +    GL+IKRLR+D GG++    F +F  E GI+   +   TPQ NGVAER   ++ E  RS  I   L +++WAEA     Y +NR P+ P     P E W G   KL HL+V GC+AYV    Q R KLD K+    F+GY +D   YRI++ ENK V  SR+V F+E             +  + +     T  V  + VT       Q  ++    ++SA Q   + P+   P              + R S   V    Y                                            N+      G P+   EA +  +A KW   MK E  +L+ N T E  +   L  G+KA+H KW+++ K + DGS   YKARLV +GF Q EG D  +  AP+ +++T+ +V  + A  D  LE +++  A+L+  ++EE+                V RL+KSLYGLKQ+ R W    D+F+   G ++   D C YF R       +++ +YVDD+++AGS  +     K  + + F MKDLG   ++LG+Q+ RD+  G + +S   YI  VL+R+     + V TP+     +S  +S     E        Y   +GSLMYA   TRPD  + V   +R M +P +  +   K I RYL    +  + FG        +G+VD D    ++ R+S TGY F +   A+SW S+  ++VT S+TEAEYVA  EA  E ++L   L  + F  + N     D++S I+L K    H RTKHIG+R+H IR  +++ VL L+ +Q   + AD+LTK
Sbjct:    3 HQRLGHMSEKGMKIMHSKGKLPGLESVG-IDMCEDCIFGKQKRVSFQTSGRTPKKERLELVHSDVWGPTTISSIGGKHYFVTFIDDHSRKVWVYFLKHKSEVFEVFKRWKAMVENETGLKIKRLRTDNGGEYEDTRFKKFCYEQGIRMERTVPGTPQHNGVAERMNRTLTERARSIRIQSGLPKQFWAEAVNTAAYLINRGPSVPLEHRIPEEVWSGKEIKLSHLKVFGCVAYVHISDQGRNKLDPKSKKCTFIGYGEDEFGYRIWDNENKKVIRSRDVIFNERMMYKDRHKNDTSNTEQSVPIFVDTDDVPDSLVTEPMVASPQ--LEELVGQSSAQQSDTLQPSTPAPV-------------LRRSSRPHVPNRRYM-------------------------------------------NYLLLTDGGEPECYDEACQTGDASKWELAMKDEMRSLISNQTWELAE---LPVGKKALHNKWVYRVKEEHDGSK-RYKARLVVKGFQQKEGVDYTDIFAPVVKLNTIRSVLSIVAIEDLYLEQLDVKTAFLHGDLDEEIYMHQPEGFSERGNKNMVCRLKKSLYGLKQAPRQWYKKFDSFMHKEGFQKCNADHCCYFKRYRSSY--IILLLYVDDMLVAGSDMDDIRRLKQQLSKEFDMKDLGPAKKILGMQITRDKHRGILQLSQTEYINRVLQRFNMGDAKPVSTPLASHFHLSKDQSPQTEEERDLMAKVPYASAIGSLMYAMVCTRPDIGHAVGVVSRFMSNPGKAHWEAVKWILRYLQGTSEKCLYFG--KGELKVQGYVDADFGGEVDHRRSTTGYIFTVGNTAVSWMSQLQKIVTLSTTEAEYVAVTEASKEMIWLQGLLTELGFKQEKNVLHS-DSQSAIHLAKNSAFHSRTKHIGLRYHFIRSLLEDEVLTLEKIQGSKNPADMLTK 872          
BLAST of mRNA_H-paniculata_contig16972.3903.1 vs. uniprot
Match: Q7XTU6_ORYSJ (OSJNBb0034I13.10 protein n=2 Tax=Oryza sativa subsp. japonica TaxID=39947 RepID=Q7XTU6_ORYSJ)

HSP 1 Score: 473 bits (1217), Expect = 3.940e-144
Identity = 335/949 (35.30%), Postives = 489/949 (51.53%), Query Frame = 1
Query:   40 HERLGHV--RDLHTIAQQQGIKFHGKLG----VCSACERGKASKQPVKKYREEQTMERLELVHTDIAGPVDKSFEG-RHFAIIFVRDYSRMRKVYALRKKSEVLRALKQFERDIAKANGLQIKRLRSDQGGQFTGEVFHQFYAENGIKQNVSAAYTPQQNGVAERSWLSVFEMTRSKMITVNLGRRYWAEAARAPVYCLNRAPTRPQNGGTPCEKWHGSIPKLDHLRVVGCMAYVMFQSQQRRKLDDKAWAEVFLGYDKDNPSYRIYNPENKSVQLSRNVRFDEEDFVTGHRGQQEHDGTREMEDICS--TPPVTPAVTRSRARGEQACVKNTEDRTSASQMPPILPTYSLPAASANPFTRGRRRAISRDSGTRVAGEHYEAVRDGSAASARSVTNTNTGESEGKPRRRSRHYRARVAKVKDTGNFTEAV-----SKGMPKSTAEALKGPEAEK---WRAEMKGEWGALVGNGTRESEDTGRLSAGRKAIHTKWIFKRKLKEDGSAAHYKARLVAQGFSQVEGEDLFETSAPIARMSTLHTVFRLAAEHDFELEGMNIDAAYLNAPVEEEL----------------VRRLRKSLYGLKQSGRNWNDTLDNFLVGIGLERSTTDSCLYFSRDDGGEADLLVAVYVDDLVIAGSREKT-DEFKHNIIQHFRMKDLGFLSRVLGIQVRRDRPNGTIAIS*VSYIREVLKRYGFDQCRGVPTPVEGKVKISAPESADKPSEPKSGNSTEYRGMVGSLMYASTETRPDTAYVVHQAARRMEDPCREDFSTCKRIFRYLSTVPDLGITFGGKSNSHGP-EGFVDVDLAENIEDRKSITGYFFKLNGGAISWCSRK*QLVTWSSTEAEYVAAGEAGNETVYLGDFLGSIRFGCKGNTTFV*DNKSVINLTKGYGTHCRTKHIGVRWHGIREWIQEGVLALKYVQTGDHLADILTK 2781
            H R GH+  + L  +AQ   ++    +     +C  C  GK  + P  +  + +  E LELVH D+ GP+  +  G R + ++ V D SR   +  L  K E   A+KQF+  +   +G +++ LR+D+GG+FT   F  +  + G+++ ++A Y+PQQN V ER   +V    RS +    L  R+W EA  A VY LNR+PT+  +G TP E WHG  P ++HLRV GC+ YV       RKLDD+    VF+GY++ + +YR+Y+P  + V +SR+V FDE    T      E   T E E        PV P+V  +   GEQ     T     A   P      S P  + N                   GE              +   + T E++G P         R  +V+D  + TE V     S     +T E     EAEK   WR  M  E  ++  N T    +   L AG KAI  KW++K K    G+   +KARLVA+G+ Q +G D  E  AP+ARM T+  +  LAA+  +E+  M++ +A+LN  +EEE+                V +LRK+LYGL+Q+ R WN  LDN L+ +   +S T+S +Y      G++ L+V VYVDDL+I GS++K  D FK  + Q F M DLGFLS  LG++V +      I +S  +Y  ++L++ G + C     P+E ++K+S  E   +  +P     TEYR +VGSL Y    TRPD AY V   +R ME P  E ++  K I RY+S     G  +G +   +    GF D D+A +++DRKS TG  F+  G  ISW S+K ++V  SS EAEY+AA  A  + ++L   +  +     G TT + DNKS INL K    H R+KHI  R+H IRE +++  +A++YV + D LAD+LTK
Sbjct:  518 HARFGHLNFQSLRRLAQGNMVRGLPTIDHTDQLCDGCLAGKQRRLPFPEEAKFRAQEALELVHGDLCGPITPATPGGRKYFLLLVDDMSRHMWIRLLSGKHEAATAIKQFQAGVELESGRKLRALRTDRGGEFTSVEFMDYCTDRGMRRELTAPYSPQQNRVVERRNQTVVAAARSMLKAAGLPARFWGEAVVAAVYVLNRSPTKALDGVTPYEAWHGRRPSVEHLRVFGCVGYVKTVKPNLRKLDDRGTRMVFIGYEQGSKAYRMYDPVAQRVCVSRDVVFDE--TATWAWRDPEDAATEEEEFTVDFFVSPVAPSVADA---GEQ-----TGTPVQAGVSPVSTGVLSSPPRAPN-------------------GEFC------------TPPTSVTPETDGGP--------VRYRRVQDILSTTEPVLDFDYSDQCLIATEEPTSFVEAEKHECWRRAMVEELRSVEENQTWSLAE---LPAGHKAIGLKWVYKLKKDPSGAIVKHKARLVAKGYVQQQGVDFDEVFAPVARMETVRLLVALAAQKGWEIHHMDVKSAFLNGELEEEVYVVQPPGFDDKTNASKVLKLRKALYGLRQAPRAWNAKLDNTLLSLKFNKSATESAVYVRGV--GDSKLIVGVYVDDLIITGSQKKEIDAFKLQMKQRFNMSDLGFLSYYLGMEVVQKGEG--IFLSQSAYAGKILEKTGMEGCNPTQVPMEARLKLSK-EGTGECVDP-----TEYRSIVGSLRYL-VNTRPDLAYSVGYVSRFMEKPTSEHWAAVKHILRYISGTIKTGCWYGREEVGNAKLVGFSDSDMAGDLDDRKSTTGVLFRYGGSLISWQSQKQKVVALSSCEAEYIAATTAACQGIWLSRLIAELLDAEPGQTTLMIDNKSAINLCKNPVFHDRSKHIDTRYHFIRECVEKKQIAVEYVCSEDQLADLLTK 1403          
BLAST of mRNA_H-paniculata_contig16972.3903.1 vs. uniprot
Match: A0A6S7H8C9_PARCT (Retrovirus-related Pol poly from transposon TNT 1-94 n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7H8C9_PARCT)

HSP 1 Score: 457 bits (1175), Expect = 3.640e-143
Identity = 303/920 (32.93%), Postives = 465/920 (50.54%), Query Frame = 1
Query:  121 CSACERGKASKQPVKKYREEQTMERLELVHTDIAGPVDK-SFEGRHFAIIFVRDYSRMRKVYALRKKSEVLRALKQFERDIAKANGLQIKRLRSDQGGQFTGEVFHQFYAENGIKQNVSAAYTPQQNGVAERSWLSVFEMTRSKMITVNLGRRYWAEAARAPVYCLNRAPTRPQNGGTPCEKWHGSIPKLDHLRVVGCMAYVMFQSQQRRKLDDKAWAEVFLGYDKDNPSYRIYNPENKSVQLSRNVRFDEEDFVTGHRGQQEHDGTREMEDICSTPPVTPAVTRSRARGEQACVKNTEDRTSASQMPPILPTYSLPAASANPFTRGRRRAISRDSGTRVAGEHYEAVRDGSAASARSVTNTNTGESEGKPRRRSRHYRARVAKVKDTGNFTEAVS--KGMPKSTAEALKGPEAEKWRAEMKGEWGALVGNGTRESEDTGRLSAGRKAIHTKWIFKRKLKEDGSAAHYKARLVAQGFSQVEGEDLFETSAPIARMSTLHTVFRLAAEHDFELEGMNIDAAYLNAPVEEEL----------------VRRLRKSLYGLKQSGRNWNDTLDNFLVGIGLERSTTDSCLY---FSRDDGGEADLLVAVYVDDLV-IAGSREKTDEFKHNIIQHFRMKDLGFLSRVLGIQVRRDRPNGTIAIS*VSYIREVLKRYGFDQCRGVPTPVEGKVKISAPESADKPSEPKSG-NSTEYRGMVGSLMYASTETRPDTAYVVHQAARRMEDPCREDFSTCKRIFRYLSTVPDLGITFGGKSNS--HGPE--GFVDVDLAENIEDRKSITGYFFKLNGGAISWCSRK*QLVTWSSTEAEYVAAGEAGNETVYLGDFLGSIRFGCKGN--TTFV*DNKSVINLTKGYGTHCRTKHIGVRWHGIREWIQEGVLALKYVQTGDHLADILTKGLS 2790
            C AC R K  + PV K    +T + LEL+H+D+ GP++  S  G  + + F  DY+R   VY L+ KSEV    +++   +    GL++K LR+D GG++    F ++    GI    S  YTPQQNGV+ER   ++ E  +S +   N+   +WAEA    VY  NR+PT   N  TP E W    P + +L+V G + ++   S  RRKLD ++   VF+GY  +   Y++Y+ E+K+   S++V F E  F         HD     +++     +   V   +   +     + ED+     +P I    +LPA                       GE YE       +  + V N  T      P++ S           D  N TE+++     P+S +EAL G  A KW+  +K E+ +L+ N T E         G   I +KW+ K K   DG+   +KARLVAQG+SQ  G +  E  +P+AR S++ T+  LA +H+ E+  M++  A+LN  +E ++                V +L+KSLYGLKQS R WN TLD+FL   G  +S  D+C+Y    + D+G  + +++AVYVDD++ I+      +  K  + +HF M D G +  +LG+ ++RDR   T+ IS   Y+  VL R+G   C+ + TP+E         +  K +E + G +   Y+  +G L Y ST TRPD +  V   +  M +P +E  +  KR+ RY+    + G+ F    N   +G +  G+ D + A +++ R+S +GY FK+    +SWCS+K   VT S+TEAEYVA  +A  E +++   L  I  GCK    TT   DN+  I  +K    H RTKHI VR+H +RE +    + + Y  T   LADI+TKGL+
Sbjct:   12 CEACTRAKMHRIPVPKQSSNRTTQPLELIHSDVCGPMNTDSIGGSKYILTFTDDYTRYVTVYFLKNKSEVYEKFQEYVSMVENFTGLKVKTLRTDNGGEYVSNDFSKYCVNKGIVHQYSNPYTPQQNGVSERLNRTLMESAKSMIFYANMPINFWAEAVNTAVYLHNRSPTTSLNMKTPYEVWFSKKPDVSNLKVFGSVCFIHTPSNLRRKLDPRSRKAVFIGYPLNTKGYKLYDIESKNFVRSKDVGFYENKF---------HDFKVVTKELI----IREDVPEEKLSVDHEQHHDAEDQVPVPTVPDIEDEENLPAV----------------------GESYE------ESFMKQVENLETKRQRKAPKKFS----------PDECNITESLTAENEEPQSISEALNGANASKWKQALKEEYNSLISNETWELVPP---PEGCNVIGSKWVMKIKRDADGNVDRHKARLVAQGYSQTPGINYEEVFSPVARHSSIRTLLALANKHNLEIHQMDVKTAFLNGYIEHDIYMSQPDGFVDQEHPEYVCKLKKSLYGLKQSARCWNQTLDSFLTKNGYRKSNADNCIYVKSITNDNGFISFVILAVYVDDIIPISNDINMLNAEKDLLCKHFEMTDQGEIHFILGMTIKRDRETKTLFISQQKYLESVLDRFGMANCKPISTPLE--------TTYHKRTEEEEGFDKNLYQQAIGCLTYISTATRPDISAAVSILSSYMSNPSKEHRNGVKRLLRYIKGTLNFGLKFTTSENDDENGDKLYGYSDANWAGDVDSRRSTSGYVFKVANSTVSWCSKKQASVTKSTTEAEYVALSQATQEAIWMRRLLSDI--GCKSEEPTTMYEDNQGAIESSKNARFHNRTKHIDVRFHFVREKVLSNEVKVIYCPTEHMLADIMTKGLT 867          
BLAST of mRNA_H-paniculata_contig16972.3903.1 vs. uniprot
Match: A0A0V0T740_9BILA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=5 Tax=Trichinella TaxID=6333 RepID=A0A0V0T740_9BILA)

HSP 1 Score: 473 bits (1216), Expect = 3.870e-143
Identity = 325/959 (33.89%), Postives = 476/959 (49.64%), Query Frame = 1
Query:   40 HERLGHVRDLHTIAQQQGIKFHG------KLGVCSACERGKASKQPVKKYREEQTMERLELVHTDIAGPV-DKSFEGRHFAIIFVRDYSRMRKVYALRKKSEVLRALKQFERDIAKANGLQIKRLRSDQGGQFTGEVFHQFYAENGIKQNVSAAYTPQQNGVAERSWLSVFEMTRSKMITVNLGRRYWAEAARAPVYCLNRAPTRPQNGGTPCEKWHGSIPKLDHLRVVGCMAYVMFQSQQRRKLDDKAWAEVFLGYDKDNPSYRIYNPENKSVQLSRNVRFDEEDFVTGHRGQQE--HDGTREMEDICSTPPVTPAVTRSRARGEQACVKNTEDRTSASQMPPILPTYSLPAASANPFTRGRRRAISRDSGTRVAGEHYEAVRDGSAASARSVTNTNTGES-EGKPR-----RRSRH---YRARVAKVKDTGNFTEAVSKGMPKSTAEALKGPEAEKWRAEMKGEWGALVGNGTRESEDTGRLSAGRKAIHTKWIFKRKLKEDGSAAHYKARLVAQGFSQVEGEDLFETSAPIARMSTLHTVFRLAAEHDFELEGMNIDAAYLNAPVEEEL------------------------VRRLRKSLYGLKQSGRNWNDTLDNFLVGIGLERSTTDSCLYFSRDDGGEADLLVAVYVDDLVIAGSRE-KTDEFKHNIIQHFRMKDLGFLSRVLGIQVRRDRPNGTIAIS*VSYIREVLKRYGFDQCRGVPTPVEGKVKISAPESADKPSEPKSGNSTEYRGMVGSLMYASTETRPDTAYVVHQAARRMEDPCREDFSTCKRIFRYLSTVPDLGITFGGKSNSHGPEGFVDVDLAENIEDRKSITGYFFKLNGGAISWCSRK*QLVTWSSTEAEYVAAGEAGNETVYLGDFLGSIRFGCKGNTTFV*DNKSVINLTKGYGTHCRTKHIGVRWHGIREWIQEGVLALKYVQTGDHLADILTKGL 2787
            H RLGH+ +   +   +  K  G      KL VC  C +GK ++ P  K + ++    LEL+HTDI GP+   S  G  + + F+ DYS+  ++Y L+ ++EVL A   F+       G +IK LRSD   ++  E F +F   NGI+   S  YTPQQNGVAER   ++ +++R  ++   L   +WAEA     Y  NR P++  NG  P   W+G    L++ R  G  AYV+ +S  + K   ++   +F+GY  ++ +YR++ P  + V  SR+V+F      TG  G  E  H  T + ++        PA           C K TE             T  L        T        +  GT V  E            A  VT T   +   G+PR     RR R    YR    +    GN         PKS  EAL   E+++W   MK E+ ALV N T E  +  +    +K +  +W++  K   DGS    KARLVA+GF Q    D  ET AP+AR+S++ T+  ++A +      ++  +AYLN  +EEE+                        V R+RK+LYGLKQSGR W   LD  L   GL+ ++ D C+YF R   G    + A+YVDD++IA ++  + +E K  + + F MKD+G +   LGI+++++  NG I +S   YI ++L+R+     + V TP++   K+SA       +E     +T YR +VGSLMY S  TRPD A+ V   ++  E+   + ++  KR+ RYL      G+ F  + NS    GF D D   N +DR+S TGY FK    AISW SRK + V  SSTEAEY+A  EA  E ++L   +G I   CK +     DN+S + L +    H RTKHI +R+H IRE  +   + L+Y+ TG  +AD+LTKGL
Sbjct:  612 HRRLGHLNERSLLELTRHEKVFGMKVGKEKLPVCEICIKGKQTQSPFPKNQAKRRCRPLELIHTDICGPMRQNSIGGSKYFVTFIDDYSQWCEIYFLKNRNEVLDAFMDFKSHAENQTGNKIKTLRSDNATEYCSENFQKFLRVNGIRHETSVQYTPQQNGVAERKNRTLLDISRCMLLESKLSLNFWAEAISTACYIRNRCPSKSLNGEIPLTLWNGRKLTLNYFRTFGEKAYVLDKSPGKGKFSTRSKECIFIGYSTESKAYRLWCPAERKVLRSRDVKF------TGKFGNDETLHQPTAQNQEW-------PA--------NDTCEKETE-------------TLELQ------LTTNESNDTHQSGGTLVQNE------------AEQVTETRKMKVLPGRPRLVRSGRRGRPKKVYRKEEVQPVTCGNVASIAEMNDPKSVTEALSCRESKEWLEAMKREYEALVKNNTWEIVNRPQR---QKVVACQWVYNTKFNADGSIKQRKARLVAKGFLQRPNIDFHETYAPVARLSSIRTILAISANYGLIAHQLDFVSAYLNGEIEEEIYMEIPEKLDEVLKCSKVKQNLDGKVCRIRKALYGLKQSGRQWYRKLDEKLSQYGLKATSGDPCVYFERR--GRELTIAAIYVDDVIIASNKNARLNELKKALAKSFEMKDMGPIHYCLGIEIKQNA-NGDIEMSQRKYIMDILERFRMMDSKTVETPIDASNKLSAEMCPRTETEKAEMQNTPYRSLVGSLMYLSVSTRPDIAFAVSLLSQFNENYGSQHWTAAKRVLRYLKKTASYGLRF--QRNSGALMGFSDADWGGNSDDRRSYTGYVFKFGNAAISWESRKQRTVALSSTEAEYMALSEACKEVIHLKQMIGEITGLCK-SVVLQSDNQSALKLARNPVFHARTKHIDIRYHFIREAAERKDVELRYLPTGQMVADVLTKGL 1509          
BLAST of mRNA_H-paniculata_contig16972.3903.1 vs. uniprot
Match: A0A7D9DPP1_PARCT (Retrovirus-related Pol poly from transposon TNT 1-94 n=4 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9DPP1_PARCT)

HSP 1 Score: 466 bits (1198), Expect = 1.490e-142
Identity = 306/920 (33.26%), Postives = 466/920 (50.65%), Query Frame = 1
Query:  121 CSACERGKASKQPVKKYREEQTMERLELVHTDIAGPVDK-SFEGRHFAIIFVRDYSRMRKVYALRKKSEVLRALKQFERDIAKANGLQIKRLRSDQGGQFTGEVFHQFYAENGIKQNVSAAYTPQQNGVAERSWLSVFEMTRSKMITVNLGRRYWAEAARAPVYCLNRAPTRPQNGGTPCEKWHGSIPKLDHLRVVGCMAYVMFQSQQRRKLDDKAWAEVFLGYDKDNPSYRIYNPENKSVQLSRNVRFDEEDFVTGHRGQQEHDGTREMEDICSTPPVTPAVTRSRARGEQACVKNTEDRTSASQMPPILPTYSLPAASANPFTRGRRRAISRDSGTRVAGEHYEAVRDGSAASARSVTNTNTGESEGKPRRRSRHYRARVAKVKDTGNFTEAVS--KGMPKSTAEALKGPEAEKWRAEMKGEWGALVGNGTRESEDTGRLSAGRKAIHTKWIFKRKLKEDGSAAHYKARLVAQGFSQVEGEDLFETSAPIARMSTLHTVFRLAAEHDFELEGMNIDAAYLNAPVEEEL----------------VRRLRKSLYGLKQSGRNWNDTLDNFLVGIGLERSTTDSCLY---FSRDDGGEADLLVAVYVDDLV-IAGSREKTDEFKHNIIQHFRMKDLGFLSRVLGIQVRRDRPNGTIAIS*VSYIREVLKRYGFDQCRGVPTPVEGKVKISAPESADKPSEPKSG-NSTEYRGMVGSLMYASTETRPDTAYVVHQAARRMEDPCREDFSTCKRIFRYLSTVPDLGITFGGKSNS--HGPE--GFVDVDLAENIEDRKSITGYFFKLNGGAISWCSRK*QLVTWSSTEAEYVAAGEAGNETVYLGDFLGSIRFGCKGN--TTFV*DNKSVINLTKGYGTHCRTKHIGVRWHGIREWIQEGVLALKYVQTGDHLADILTKGLS 2790
            C AC R K  + PV K    +T + LEL+H+D+ GP++  S  G  + + F  DY+R   VY L+ KSEV    +++   +    GL++K LR+D GG++    F ++    GI    S  YTPQQNGV+ER   ++ E  +S +   N+   +WAEA    VY  NR+PT   N  TP E W    P + +L+V G + ++   S  RRKLD ++   VF+GY  D   Y++Y+ E+K+   S++V F E  F         HD     +++     +   V   +   +     + ED+     +P I    +LPA                       GE YE       +  + V N  T      P++ S           D  N TE+++     P+S +EAL G  A KW+  +K E+ +L+ N T E         G   I +KW+ K K   DG+   +KARLVAQG+SQ  G D  E  +P+AR S++ T+  LA +H+ E+  M++  A+LN  +E ++                V +L+KSLYGLKQS R WN TLD+FL   G  +S  D+C+Y      D+G  + +++AVYVDD++ I+      +  K  + +HF M D G +  +LG+ ++RDR   T+ IS   Y+  VL R+G   C+ + TP+E         +  K +E + G +   Y+  +G L Y ST TRPD +  V   +  M +P +E ++  KR+ RY+    + G+ F    N   +G E  G+ D + A +++ R+S +GY FK+    +SWCS+K   VT S+TEAEYVA  +A  E +++   L  I  GCK    TT   DN+  I ++K    H RTKHI VR+H +RE +    + + Y  T   LADI+TKGL+
Sbjct:  409 CEACTRAKMHRIPVPKQSSNRTTQPLELIHSDVCGPMNTDSIGGSKYILTFTDDYTRYVTVYFLKNKSEVYEKFQEYVSMVENFTGLKVKTLRTDNGGEYVSNDFSKYCVNKGIVHQYSNPYTPQQNGVSERLNRTLMESAKSMIFHANMPINFWAEAVNTAVYLHNRSPTTSLNMKTPYELWFSKKPDVSNLKVFGSVCFIHIPSNLRRKLDPRSRKAVFIGYPLDTKGYKLYDIESKNFVRSKDVVFYENKF---------HDFKVVTKELI----IREDVPEEKLSVDHEQHHDAEDQVPVPTVPDIEDEENLPAV----------------------GESYE------ESFMKQVENLETKRQRKAPKKFS----------PDECNITESLTAENEEPQSISEALNGANASKWKQALKEEYNSLISNETWELVPP---PEGCNVIGSKWVMKIKRDADGNVDRHKARLVAQGYSQTPGIDYEEVFSPVARHSSIRTLLALANKHNLEIHQMDVKTAFLNGYIEHDIYMSQPDGFVDQEHPEYVCKLKKSLYGLKQSARCWNQTLDSFLTKNGYRKSNADNCIYVKSIKNDNGFISFVILAVYVDDIIPISNDINMLNAEKDLLCKHFEMTDQGEIHFILGMTIKRDRETKTLFISQQKYLESVLDRFGMANCKPISTPLE--------TTYHKRTEEEEGFDKNLYQQAIGCLTYISTATRPDISAAVSILSSYMSNPSKEHWNGVKRLLRYIKGTLNFGLKFTTSENDDENGDELYGYSDANWAGDVDSRRSTSGYVFKVANSTVSWCSKKQASVTKSTTEAEYVALSQATQEAIWMRGLLSDI--GCKSEEPTTMYEDNQGAIEISKNARFHNRTKHIDVRFHFVREKVLSNEVKVIYCPTEHMLADIMTKGLT 1264          
BLAST of mRNA_H-paniculata_contig16972.3903.1 vs. uniprot
Match: A0A5B7BAK4_DAVIN (Uncharacterized protein n=1 Tax=Davidia involucrata TaxID=16924 RepID=A0A5B7BAK4_DAVIN)

HSP 1 Score: 465 bits (1196), Expect = 4.340e-142
Identity = 308/945 (32.59%), Postives = 468/945 (49.52%), Query Frame = 1
Query:   25 DIKLLHERLGHVRD-----LHTIAQQQGIKFHGKLGVCSACERGKASKQPVKKYREEQTMERLELVHTDIAGPVD-KSFEGRHFAIIFVRDYSRMRKVYALRKKSEVLRALKQFERDIAKANGLQIKRLRSDQGGQFTGEVFHQFYAENGIKQNVSAAYTPQQNGVAERSWLSVFEMTRSKMITVNLGRRYWAEAARAPVYCLNRAPTRPQNGGTPCEKWHGSIPKLDHLRVVGCMAYVMFQSQQRRKLDDKAWAEVFLGYDKDNPSYRIYNPENKSVQLSRNVRFDEEDFVTGHRGQQEHDGTREMEDICSTPPVTPAVTRSRARGEQACVKNTEDRTSASQMPPILPTYSLPAASANPFTRGRRRAISRDSGTRVAGEHYEAVRDGSAASARSVTNTNTGESEGKPRRRSRHYRARVAKVKDTGNFTEAVSKGMPKSTAEALKGPEAEKWRAEMKGEWGALVGNGTRESEDTGRLSAGRKAIHTKWIFKRKLKEDGSAAHYKARLVAQGFSQVEGEDLFETSAPIARMSTLHTVFRLAAEHDFELEGMNIDAAYLNAPVEEE----------------LVRRLRKSLYGLKQSGRNWNDTLDNFLVGIGLERSTTDSCLYFSRDDGGEADLLVAVYVDDLVIAGSR-EKTDEFKHNIIQHFRMKDLGFLSRVLGIQVRRDRPNGTIAIS*VSYIREVLKRYGFDQCRGVPTPVEGKVKISAPESADKPSEPKSGNSTEYRGMVGSLMYASTETRPDTAYVVHQAARRMEDPCREDFSTCKRIFRYLSTVPDLGITFGGKSNSHGPEGFVDVDLAENIEDRKSITGYFFKLNGGAISWCSRK*QLVTWSSTEAEYVAAGEAGNETVYLGDFLGSIRFGCKGNTTFV*DNKSVINLTKGYGTHCRTKHIGVRWHGIREWIQEGVLALKYVQTGDHLADILTKGLS 2790
            D  L H RLGH+       LH+  + QG+K    + +C  C  GK  K    K       E+LELVHTD+ GP    S  G  + + F+ D +R   VY L+ KS+V    K+++  +    GL+IK LRSD GG++T + F +F A NGI+   +   TPQQNGVAER   ++ E  RS  I   L + +WA+A     Y +NR P+ P + G P E W G    L HL+V GC++YV   S  R KLD K+    F+GY  D   YR ++ +N+ +  SR+V F+E+       G + ++     E         P+ +   +R     V+N  +     Q+ P+ P   L  +S           +S+         +Y  + D                                               G P+   EAL+  ++ KW + M+ E  +L+ N T +  +   L  G+KA+H KW+++ K + DGS   YKARLV +GF Q EG D  E  +P+ +M+T+  V  + A  +  LE +++  A+L+  +EE+                L+ +L KSLYGLKQ+ R W    D F+   G  R   D C Y  R D     +++ +YVDD++IAGS  ++    K+ + + F MKDLG   ++LG+++ RDR  GT+ +S   Y++ V+ R+     + V TP+    +++  +S     E        Y   VGSLMYA   TRPD A+ V   +R M +P ++ +   K I RYL    D  + F         +G+VD DLA ++++RKS TGY F L G A+SW SR  ++V  S+TEAEYVA  EA  E V+L  FL  +    + N+    D++S I+L K    H RTKHI +R+H IR  + + VL+L+ ++   + AD+LTK ++
Sbjct:  414 DSNLWHYRLGHMSQKGMKVLHSKGKLQGLKSVD-IDLCEDCIFGKQKKVSFSKAGRTPKAEKLELVHTDVWGPSPVSSLGGSSYYVTFIDDSTRKVWVYFLKSKSDVFSTFKKWKAMVENETGLKIKCLRSDNGGEYTDKEFKEFCATNGIRMEKTIPKTPQQNGVAERMNRTLNERGRSMRIHAGLPKMFWADAVNTAAYLINRGPSVPLDDGLPEEAWSGKEVNLSHLKVFGCVSYVHIDSDARSKLDPKSKKCTFIGYGTDEFGYRFWDDQNRKITRSRDVIFNEKVLYKDRSGAESNNADTHAEKTGFVELEEPSESEVHSR-----VQNNPENI-IPQVEPVTPATGLRRSS----------RVSKAPQCYSPSLYYLLLSDS----------------------------------------------GEPECYDEALQVGDSAKWESAMQDEMDSLMSNQTWKLTE---LPKGKKALHNKWVYRIKEEHDGSK-RYKARLVVKGFQQKEGVDYTEIFSPVVKMTTIRLVLGIVAAENLHLEQLDVKTAFLHGDLEEDIYMKQPQGFTAPGKEGLICKLAKSLYGLKQAPRQWYKKFDGFMCTNGFTRCQADHCCYMKRFDNDY--IILLLYVDDMLIAGSSIQEIKNLKNQLSKQFAMKDLGAAKQILGMRISRDRTAGTLKLSQAEYVKRVISRFSMQDAKPVSTPLASHFRLTKDQSPKTEEEQGYMQRVPYASAVGSLMYAMVCTRPDIAHAVGVVSRFMSNPGKKHWEAIKWILRYLKGTTDTALCFDEADMVL--QGYVDSDLAGDVDNRKSTTGYVFTLGGTAVSWVSRLQKIVALSTTEAEYVAVTEASKEMVWLQSFLEELGKKWE-NSVLYSDSQSAIHLAKNSAFHSRTKHIQLRYHFIRSLLDDKVLSLEKIRGSQNPADMLTKAVT 1286          
BLAST of mRNA_H-paniculata_contig16972.3903.1 vs. uniprot
Match: Q9C7Y1_ARATH (Copia-type polyprotein, putative; 28768-32772 n=3 Tax=Arabidopsis thaliana TaxID=3702 RepID=Q9C7Y1_ARATH)

HSP 1 Score: 464 bits (1193), Expect = 2.180e-141
Identity = 313/950 (32.95%), Postives = 494/950 (52.00%), Query Frame = 1
Query:   40 HERLGHV--RDLHTIAQQQGIKFHGKL------GVCSACERGKASKQPVKKYREEQTMERLELVHTDIAGPVDK-SFEGRHFAIIFVRDYSRMRKVYALRKKSEVLRALKQFERDIAKANGLQIKRLRSDQGGQFTGEVFHQFYAENGIKQNVSAAYTPQQNGVAERSWLSVFEMTRSKMITVNLGRRYWAEAARAPVYCLNRAPTRPQNGGTPCEKWHGSIPKLDHLRVVGCMAYVMFQSQQRRKLDDKAWAEVFLGYDKDNPSYRIYNPENKSVQLSRNVRFDEEDFVTGHRGQQEHDGTREMEDICSTPPVTPAVTRSRARGEQACVKNTEDRTSASQMPPILPTYS------LPAASANPFTRGRRRAISRDSGTRVAGEHYEAVRDGSAASARSVTNTNTGESEGKPRRRSRHYRARVAKVKDTGNFTEAVSKGMPKSTAEALKGPEAEKWRAEMKGEWGALVGNGTRESEDTGRLSAGRKAIHTKWIFKRKLKEDGSAAHYKARLVAQGFSQVEGEDLFETSAPIARMSTLHTVFRLAAEHDFELEGMNIDAAYLNAPVEEEL----------------VRRLRKSLYGLKQSGRNWNDTLDNFLVGIGLERSTTDSCLYFSRDDGGEADLLVAVYVDDLVIAGSR-EKTDEFKHNIIQHFRMKDLGFLSRVLGIQVRRDRPNGTIAIS*VSYIREVLKRYGFDQCRGVPTPVEGKVKISAPESADKPSEPKSGNSTEYRGMVGSLMYASTETRPDTAYVVHQAARRMEDPCREDFSTCKRIFRYLSTVPDLGITF--GGKSNSHGPEGFVDVDLAENIEDRKSITGYFFKLNGGAISWCSRK*QLVTWSSTEAEYVAAGEAGNETVYLGDFLGSIRFGCKGNTTFV*DNKSVINLTKGYGTHCRTKHIGVRWHGIREWIQEGVLALKYVQTGDHLADILTKGL 2787
            H+R GH+  + L ++A+++ +K   K        VC  C +GK  ++ + K    ++ + L+LVHTDI GP++  S  G+ + + F+ D+SR    Y L +KSE  +  K+F+ ++ + +G ++  LRSD+GG++    F ++  E GIK+ ++AAYTPQQNGVAER   SV  MTR  ++ +++ R++W EA +  VY LNR+P++  N  TP EKW    P ++HLR+ G +AY +   Q+R KLD+K+   V  G  K++ +YR+Y+P    + +SR+V+FDEE      RG +  D + E E +       PA       GE+    N   +    +      T +      LPA       + ++    +D    V G                                     ARV   +D  +   A+  G P       +  + E WR  M+ E  ++  N T E  +   L    K I  KWIFK K  E G    +KARLVA+G+ Q  G D +E  AP+A+  T+  +  LAAE  + +  +++ +A+L+  ++E++                V +L+K+LYGLKQ+ R W   ++ F    G E+   +  L+  ++      L+V+VYVDDL+  GS  E  + FK+++++ F M DLG +   LG++V +D     I I+   Y  E++K+YG + C  V  P+    K++   + D      + + TE++ ++GSL Y +T TRPD  + V+  +R ME P  +     KRI RY+    DLGI +  GG +   G   FVD D A +++DRKS +GY F L GGAI+W S+K  +VT S+TEAE+V+A     + V+L + L  I    +G T    DN S I L+K    H R+KHI VR+H +RE ++EG + L Y  T D +ADI+TK +
Sbjct:  436 HKRFGHLNHQGLRSLAEKEMVKGLPKFDLGEEEAVCDICLKGKQIRESIPKESAWKSTQVLQLVHTDICGPINPASTSGKRYILNFIDDFSRKCWTYLLSEKSETFQFFKEFKAEVERESGKKLVCLRSDRGGEYNSREFDEYCKEFGIKRQLTAAYTPQQNGVAERKNRSVMNMTRCMLMEMSVPRKFWPEAVQYAVYILNRSPSKALNDITPEEKWSSWKPSVEHLRIFGSLAYALVPYQKRIKLDEKSIKCVMFGVSKESKAYRLYDPATGKILISRDVQFDEE------RGWEWEDKSLEEELVWDNSDHEPA-------GEEGPEINHNGQQDQEETXXXXETVAETVHQNLPAVGTGGVRQRQQPVWMKDY---VVGN------------------------------------ARVLITQDEEDEVLALFIG-PDDPVCFEEAAQLEVWRKAMEAEITSIEENNTWELVE---LPEEAKVIGLKWIFKTKFNEKGEVDKFKARLVAKGYHQRYGVDFYEVFAPVAKWDTIRLILGLAAEKGWSVFQLDVKSAFLHGDLKEDVFVEQPKGFEVEEESSKVYKLKKALYGLKQAPRAWYSRIEEFFGKEGFEKCYCEHTLFVKKERSDF--LVVSVYVDDLIYTGSSMEMIEGFKNSMMEEFAMTDLGKMKYFLGVEVIQDERG--IFINQRKYAAEIIKKYGMEGCNSVKNPIVPGQKLTKAGAGD------AVDPTEFKQLIGSLRYLTT-TRPDLIFSVNLVSRYMESPNEQHLLAVKRILRYVQGTLDLGIQYERGGATELVG---FVDSDYAGDVDDRKSTSGYVFMLGGGAIAWASKKQPIVTLSTTEAEFVSASYGACQAVWLRNVLEEIGCRQEGGTLVFCDNSSTIKLSKNPVLHGRSKHIHVRYHFLRELVKEGTIRLDYCTTTDQVADIMTKAV 1315          
BLAST of mRNA_H-paniculata_contig16972.3903.1 vs. uniprot
Match: A0A6A2WSU7_HIBSY (Integrase catalytic domain-containing protein n=2 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A2WSU7_HIBSY)

HSP 1 Score: 460 bits (1183), Expect = 6.510e-141
Identity = 307/946 (32.45%), Postives = 477/946 (50.42%), Query Frame = 1
Query:   25 DIKLLHERLGHV--RDLHTIAQQQGIKFHGKLG----VCSACERGKASKQPVKKYREEQTMERLELVHTDIAGPVD-KSFEGRHFAIIFVRDYSRMRKVYALRKKSEVLRALKQFERDIAKANGLQIKRLRSDQGGQFTGEVFHQFYAENGIKQNVSAAYTPQQNGVAERSWLSVFEMTRSKMITVNLGRRYWAEAARAPVYCLNRAPTRPQNGGTPCEKWHGSIPKLDHLRVVGCMAYVMFQSQQRRKLDDKAWAEVFLGYDKDNPSYRIYNPENKSVQLSRNVRFDEEDFVTGHRGQQEHDGTREMEDICSTPPVTPAVTRSRARGEQACVKNT-EDRTSASQMPPILPTYSLPAASANPFTRGRRRAISRDSGTRVAGEHYEAVRDGSAASARSVTNTNTGESEGKPRRRSRHYRARVAKVKDTGNFTEAVSKGMPKSTAEALKGPEAEKWRAEMKGEWGALVGNGTRESEDTGRLSAGRKAIHTKWIFKRKLKEDGSAAHYKARLVAQGFSQVEGEDLFETSAPIARMSTLHTVFRLAAEHDFELEGMNIDAAYLNAPVEEEL----------------VRRLRKSLYGLKQSGRNWNDTLDNFLVGIGLERSTTDSCLYFSRDDGGEADLLVAVYVDDLVIAGSREKT-DEFKHNIIQHFRMKDLGFLSRVLGIQVRRDRPNGTIAIS*VSYIREVLKRYGFDQCRGVPTPVEGKVKISAPESADKPSEPKSGNSTEYRGMVGSLMYASTETRPDTAYVVHQAARRMEDPCREDFSTCKRIFRYLSTVPDLGITFGGKSNSHGPEGFVDVDLAENIEDRKSITGYFFKLNGGAISWCSRK*QLVTWSSTEAEYVAAGEAGNETVYLGDFLGSIRFGCKGNTTFV*DNKSVINLTKGYGTHCRTKHIGVRWHGIREWIQEGVLALKYVQTGDHLADILTKGL 2787
            D  L H R GH+    L  +++   +K   ++     +C AC +GK  +Q  K  R  +    LE+VHTDIAGP D  S  G  + + F+ D+SR   +Y L++KSE L  LK+F+    K +G  +K LRSD+GG++T ++F +F  E+GI   ++A YTPQQNGVAER   ++ +M RS +    L R +WAEA R  VY LNR PT+     TP E W G  P + H ++ GC+AY       R+KLDD+    +F+GYD+ + +YR+YNP  K + +SR+V FDE D+    R  +E    +++E +         + +     +Q   +N     +S+S    I+     P       TR RR             E Y      + +    + N+                        D   + EAV               E +KWR  M  E  ++  N T E     R   G   I  KW++K K+ ++G+   YKARLV +G+ Q +G D  E  AP+AR+ T+  +  +A +  +++  M++ +A+LN  +EEE+                V RL+K+LYGLKQ+ R WN  +D +    G  +S  +  LY  +++ G+  ++V +YVDD++  G+     ++FK  + + F M D+G +S  LG++V++ +    I      Y  E+L+++  + C+ V TP E  VK+S   + ++       N T ++ +VGSL Y  T TRPD  Y V   +R ME P ++ +S  KRI RY+      G+ +    NS    G+ D D   +++D+KS TGY F +     SW S+K Q V  S+ EAEY+AA     + ++L + L  +    +  TT   DNKS I+L K   +H R+ HI  ++H IRE ++   + L Y +T D LADI TK L
Sbjct:  327 DSWLWHLRYGHLGFSGLKLLSKTSMVKGLPEINPPNQLCEACIKGKQHRQSFKVGRSGRAQRLLEIVHTDIAGPFDIPSLGGNRYYLTFIDDFSRKCWIYILKEKSEALEKLKEFKAMAEKQSGQYLKILRSDRGGEYTSKLFEEFCKEHGIIHQLTARYTPQQNGVAERKNRTILDMARSMIKGKQLPRNFWAEAVRCAVYLLNRCPTKSVKYMTPNEAWSGQKPGVGHFKIFGCIAYAHVPEHTRKKLDDRGEKCIFIGYDERSKAYRLYNPLTKKIIISRDVEFDEADYW---RWSEEE---KKVEGLFFEDKDGDLINQDEQADDQDPRQNLPSSSSSSSDASNIIEDPEAPPTELQRSTRERRMP-----------ERYNDYELNNVSLFCLLVNS------------------------DPITYEEAV---------------EDDKWRNAMDEEIASIERNDTWELT---RQPEGHNPIGVKWVYKTKINKEGNVEKYKARLVVKGYKQRQGIDYDEVFAPVARIETIRLLTAVATQKGWKIYQMDVKSAFLNGYLEEEVYIEQPPGYIRKGHEDKVYRLKKALYGLKQAPRAWNTRIDEYFQRNGFMKSPYEHALYTKKNEDGDI-MIVCLYVDDMIFTGNNPGMFNDFKKAMTKEFEMTDIGEMSYFLGVEVKQMQEGIFIT---KKYAEEILRKFRMEDCKPVATPAEPGVKLSVNSTREQV------NPTLFKSIVGSLRYL-TITRPDITYAVGLVSRFMEHPKQDHWSAAKRILRYVKGTTGHGLFYMHSENSK-LVGYSDSDYGGDLDDQKSTTGYLFHIGSAVFSWSSKKQQTVALSTCEAEYIAAAACTCQAMWLRNILNELNLAQEEPTTIYVDNKSTISLAKNPVSHSRSNHIDTKYHFIREQVKNKNVELIYCRTEDQLADIFTKPL 1201          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig16972.3903.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6D2IM54_9BRAS3.440e-14633.61Uncharacterized protein n=2 Tax=Microthlaspi errat... [more]
A0A0K8WJW9_BACLA1.040e-14533.26Retrovirus-related Pol polyprotein from transposon... [more]
A0A4Y1RID3_PRUDU3.810e-14532.62Toll-Interleukin-Resistance domain family protein ... [more]
Q7XTU6_ORYSJ3.940e-14435.30OSJNBb0034I13.10 protein n=2 Tax=Oryza sativa subs... [more]
A0A6S7H8C9_PARCT3.640e-14332.93Retrovirus-related Pol poly from transposon TNT 1-... [more]
A0A0V0T740_9BILA3.870e-14333.89Retrovirus-related Pol polyprotein from transposon... [more]
A0A7D9DPP1_PARCT1.490e-14233.26Retrovirus-related Pol poly from transposon TNT 1-... [more]
A0A5B7BAK4_DAVIN4.340e-14232.59Uncharacterized protein n=1 Tax=Davidia involucrat... [more]
Q9C7Y1_ARATH2.180e-14132.95Copia-type polyprotein, putative; 28768-32772 n=3 ... [more]
A0A6A2WSU7_HIBSY6.510e-14132.45Integrase catalytic domain-containing protein n=2 ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig16972contigH-paniculata_contig16972:2550..5512 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score308.5
Seed ortholog evalue6.9e-81
Seed eggNOG ortholog15368.BRADI2G31610.1
KEGG koko:K20093
Hectar predicted targeting categoryother localisation
EggNOG free text desc.gag-polypeptide of LTR copia-type
EggNOG OGs37THH@33090,3GG2K@35493,3IIIB@38820,3M5VU@4447,COG2801@1,KOG0017@2759
EC3.6.4.12
COG Functional cat.L
Best tax levelPoales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03036
Exons4
Model size2790
Cds size1845
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig16972.3903.1prot_H-paniculata_contig16972.3903.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig16972 3369..5326 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929342.6376579-UTR-H-paniculata_contig16972:2549..31831622929342.6376579-UTR-H-paniculata_contig16972:2549..3183Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig16972 2550..3183 -
1691480822.6788402-UTR-H-paniculata_contig16972:2549..31831691480822.6788402-UTR-H-paniculata_contig16972:2549..3183Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig16972 2550..3183 -
1622929342.6642232-UTR-H-paniculata_contig16972:3243..33681622929342.6642232-UTR-H-paniculata_contig16972:3243..3368Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig16972 3244..3368 -
1691480822.6906867-UTR-H-paniculata_contig16972:3243..33681691480822.6906867-UTR-H-paniculata_contig16972:3243..3368Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig16972 3244..3368 -
1622929342.7239356-UTR-H-paniculata_contig16972:5326..55121622929342.7239356-UTR-H-paniculata_contig16972:5326..5512Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig16972 5327..5512 -
1691480822.735372-UTR-H-paniculata_contig16972:5326..55121691480822.735372-UTR-H-paniculata_contig16972:5326..5512Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig16972 5327..5512 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929342.6769357-CDS-H-paniculata_contig16972:3368..36991622929342.6769357-CDS-H-paniculata_contig16972:3368..3699Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16972 3369..3699 -
1691480822.7032177-CDS-H-paniculata_contig16972:3368..36991691480822.7032177-CDS-H-paniculata_contig16972:3368..3699Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16972 3369..3699 -
1622929342.6903996-CDS-H-paniculata_contig16972:3750..43601622929342.6903996-CDS-H-paniculata_contig16972:3750..4360Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16972 3751..4360 -
1691480822.7151587-CDS-H-paniculata_contig16972:3750..43601691480822.7151587-CDS-H-paniculata_contig16972:3750..4360Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16972 3751..4360 -
1622929342.705056-CDS-H-paniculata_contig16972:4422..53261622929342.705056-CDS-H-paniculata_contig16972:4422..5326Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16972 4423..5326 -
1691480822.7251396-CDS-H-paniculata_contig16972:4422..53261691480822.7251396-CDS-H-paniculata_contig16972:4422..5326Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16972 4423..5326 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig16972.3903.1

>prot_H-paniculata_contig16972.3903.1 ID=prot_H-paniculata_contig16972.3903.1|Name=mRNA_H-paniculata_contig16972.3903.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=615bp
MERLELVHTDIAGPVDKSFEGRHFAIIFVRDYSRMRKVYALRKKSEVLRA
LKQFERDIAKANGLQIKRLRSDQGGQFTGEVFHQFYAENGIKQNVSAAYT
PQQNGVAERSWLSVFEMTRSKMITVNLGRRYWAEAARAPVYCLNRAPTRP
QNGGTPCEKWHGSIPKLDHLRVVGCMAYVMFQSQQRRKLDDKAWAEVFLG
YDKDNPSYRIYNPENKSVQLSRNVRFDEEDFVTGHRGQQEHDGTREMEDI
CSTPPVTPAVTRSRARGEQACVKNTEDRTSASQMPPILPTYSLPAASANP
FTRGRRRAISRDSGTRVAGEHYEAVRDGSAASARSVTNTNTGESEGKPRR
RSRHYRARVAKVKDTGNFTEAVSKGMPKSTAEALKGPEAEKWRAEMKGEW
GALVGNGTRESEDTGRLSAGRKAIHTKWIFKRKLKEDGSAAHYKARLVAQ
GFSQVEGEDLFETSAPIARMSTLHTVFRLAAEHDFELEGMNIDAAYLNAP
VEEELVRRLRKSLYGLKQSGRNWNDTLDNFLVGIGLERSTTDSCLYFSRD
DGGEADLLVAVYVDDLVIAGSREKTDEFKHNIIQHFRMKDLGFLSRVLGI
QVRRDRPNGTIAIS*
back to top

mRNA from alignment at H-paniculata_contig16972:2550..5512-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig16972.3903.1 ID=mRNA_H-paniculata_contig16972.3903.1|Name=mRNA_H-paniculata_contig16972.3903.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2963bp|location=Sequence derived from alignment at H-paniculata_contig16972:2550..5512- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAAGAGAAACATAAGCCGGTAGTGGATATCAAGCTGCTTCACGAGCGACT AGGACATGTGCGCGATCTCCACACGATCGCGCAGCAGCAAGGCATCAAGT TCCACGGGAAGCTCGGCGTCTGTTCAGCGTGTGAGCGAGGAAAGGCATCG AAACAACCCGTCAAGAAGTATCGGGAAGAGCAGACAATGGAGCGACTGGA GCTAGTGCATACTGACATCGCAGGACCGGTAGACAAATCTTTCGAGGGAC GGCATTTCGCCATTATCTTCGTGCGTGACTACAGTCGAATGCGTAAGGTC TACGCCCTGAGAAAAAAATCAGAGGTGTTACGGGCTCTGAAACAGTTCGA GCGAGACATCGCGAAGGCAAACGGGCTACAAATAAAACGTCTTCGGTCAG ACCAAGGAGGACAGTTTACAGGAGAAGTGTTCCACCAGTTTTATGCAGAA AATGGCATCAAGCAAAATGTTTCTGCCGCCTACACGCCGCAGCAAAACGG TGTGGCGGAGCGCAGCTGGCTTAGCGTTTTCGAGATGACCCGAAGTAAGA TGATAACCGTCAACTTGGGTCGCAGGTATTGGGCGGAGGCGGCGCGCGCG CCTGTGTATTGCTTAAATCGCGCCCCAACGCGACCGCAAAACGGAGGGAC GCCGTGTGAGAAATGGCATGGCTCGATACCAAAGCTTGACCACCTTCGTG TCGTCGGCTGCATGGCATACGTGATGTTCCAGTCACAGCAAAGACGCAAG CTCGACGACAAGGCATGGGCGGAGGTGTTTCTGGGGTACGACAAGGACAA CCCGAGTTATCGCATTTATAACCCGGAAAACAAGAGCGTCCAGTTGAGCA GGAACGTGAGGTTTGACGAGGAGGACTTCGTAACCGGTCATCGCGGACAG CAGGAGCACGACGGGACGCGAGAGATGGAAGATATTTGTTCAACACCGCC AGTCACGCCAGCGGTCACTCGATCCCGCGCCCGAGGCGAGCAAGCATGCG TAAAAAACACGGAAGACCGGACGTCGGCGTCACAAATGCCGCCGATTTTG CCGACATATTCGCTGCCAGCCGCCAGCGCAAACCCATTCAGTGTCTTGAG CGATGACGATGATGACGAAAGTAACGGCGACTCCACGATGAAGGATGCGG AGCCCGCGGTCGAAGACGCGCCATCAGCAGGGACAGTGGCACCCGCGTCG CGGGGGAACACTACGAAGCAGTCAGGGACGGAAGCGCAGCGTCCGCGAGA TCGGTCACCAATACGAACACGGGCGAGAGCGAGGGAAAACCGCGAAGAAG ATCTAGGCACTACCGCGCGCGCGTGGCAAAAGTAAAAGACACTGGCAACT TCACAGAGGCGGTATCTAAGGGAATGCCGAAATCCACGGCAGAAGCATTA AAGGGTCCAGAGGCGGAAAAATGGCGCGCGGAAATGAAGGGAGAATGGGG GGCGTTGGTGGGAAATGGAACACGGGAAAGCGAAGACACAGGGAGGTTAT CGGCAGGGCGGAAGGCGATTCATACGAAATGGATTTTCAAGCGGAAACTG AAGGAGGATGGCAGCGCGGCACACTACAAAGCGCGACTGGTGGCTCAAGG CTTTTCCCAAGTGGAGGGTGAAGATTTATTTGAAACCAGCGCTCCCATAG CTCGTATGTCGACGTTACATACTGTTTTTAGGCTGGCCGCCGAACATGAT TTCGAATTAGAAGGTATGAACATAGATGCGGCGTATTTGAACGCCCCGGT AGAAGAAGAGCTGTTTGTTAAGCTACCCCTCGATTTTTCCCCTTTCTCCC GAGACATACCGAGTGTGCGTCGCCTGCGCAAAAGCCTGTATGGCCTCAAG CAGAGCGGCCGTAACTGGAATGACACTCTCGACAATTTTCTTGTTGGGAT AGGACTCGAGCGTTCCACTACCGACTCATGCTTGTACTTTTCTCGCGACG ATGGGGGAGAGGCAGACCTTCTGGTGGCCGTGTATGTTGACGACCTGGTC ATTGCTGGCAGTCGTGAGAAAACAGACGAGTTCAAGCATAACATAATTCA GCATTTTAGAATGAAAGACTTGGGTTTTCTCTCACGCGTGTTGGGAATAC AAGTACGACGTGACCGCCCTAATGGTACCATAGCTATCTCGTAGGTTAGC TACATTCGCGAGGTACTAAAAAGATACGGTTTTGACCAGTGTCGAGGCGT ACCCACCCCTGTAGAGGGAAAAGTGAAGATTTCGGCACCCGAGTCGGCCG ACAAGCCCTCCGAACCGAAGTCACTTGGGGCTGTACCGTCGGACATAGGC GCAGGAGTACAAGAAAGCAGCAGAGGGAGAAGTGGCAATTCAACTGAATA CAGAGGCATGGTAGGATCACTCATGTATGCCTCGACAGAAACTAGACCTG ATACAGCATACGTGGTACATCAAGCAGCACGTCGTATGGAGGACCCATGT CGGGAAGACTTCAGTACATGCAAGCGCATTTTTCGTTATCTCAGTACTGT GCCTGACCTCGGCATTACGTTCGGGGGTAAAAGTAATAGTCACGGTCCCG AAGGATTCGTTGATGTCGATTTGGCGGAAAATATCGAGGACCGAAAGTCC ATAACAGGATACTTTTTCAAACTGAACGGTGGTGCGATAAGTTGGTGCTC TAGGAAGTAACAGTTAGTCACGTGGTCCAGTACAGAGGCAGAGTACGTTG CTGCAGGAGAAGCCGGAAATGAGACGGTATATCTTGGGGATTTTCTAGGA TCGATACGTTTCGGATGCAAGGGGAACACGACATTTGTTTAGGACAATAA ATCAGTTATTAATCTCACTAAGGGATATGGCACACACTGCAGGACAAAGC ACATCGGAGTGCGCTGGCACGGAATTCGAGAGTGGATTCAGGAAGGAGTA TTGGCATTGAAATACGTGCAGACCGGCGACCACCTTGCTGACATTTTAAC GAAAGGGCTAAGC
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig16972:2550..5512-

>mRNA_H-paniculata_contig16972.3903.1 ID=mRNA_H-paniculata_contig16972.3903.1|Name=mRNA_H-paniculata_contig16972.3903.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=3690bp|location=Sequence derived from alignment at H-paniculata_contig16972:2550..5512- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGAGCGACTGGAGCTAGTGCATACTGACATCGCAGGACCGGTAGACAA
ATCTTTCGAGGGACGGCATTTCGCCATTATCTTCGTGCGTGACTACAGTC
GAATGCGTAAGGTCTACGCCCTGAGAAAAAAATCAGAGGTGTTACGGGCT
CTGAAACAGTTCGAGCGAGACATCGCGAAGGCAAACGGGCTACAAATAAA
ACGTCTTCGGTCAGACCAAGGAGGACAGTTTACAGGAGAAGTGTTCCACC
AGTTTTATGCAGAAAATGGCATCAAGCAAAATGTTTCTGCCGCCTACACG
CCGCAGCAAAACGGTGTGGCGGAGCGCAGCTGGCTTAGCGTTTTCGAGAT
GACCCGAAGTAAGATGATAACCGTCAACTTGGGTCGCAGGTATTGGGCGG
AGGCGGCGCGCGCGCCTGTGTATTGCTTAAATCGCGCCCCAACGCGACCG
CAAAACGGAGGGACGCCGTGTGAGAAATGGCATGGCTCGATACCAAAGCT
TGACCACCTTCGTGTCGTCGGCTGCATGGCATACGTGATGTTCCAGTCAC
AGCAAAGACGCAAGCTCGACGACAAGGCATGGGCGGAGGTGTTTCTGGGG
TACGACAAGGACAACCCGAGTTATCGCATTTATAACCCGGAAAACAAGAG
CGTCCAGTTGAGCAGGAACGTGAGGTTTGACGAGGAGGACTTCGTAACCG
GTCATCGCGGACAGCAGGAGCACGACGGGACGCGAGAGATGGAAGATATT
TGTTCAACACCGCCAGTCACGCCAGCGGTCACTCGATCCCGCGCCCGAGG
CGAGCAAGCATGCGTAAAAAACACGGAAGACCGGACGTCGGCGTCACAAA
TGCCGCCGATTTTGCCGACATATTCGCTGCCAGCCGCCAGCGCAAACCCA
TTCAATGGAGCGACTGGAGCTAGTGCATACTGACATCGCAGGACCGGTAG
ACAAATCTTTCGAGGGACGGCATTTCGCCATTATCTTCGTGCGTGACTAC
AGTCGAATGCGTAAGGTCTACGCCCTGAGAAAAAAATCAGAGGTGTTACG
GGCTCTGAAACAGTTCGAGCGAGACATCGCGAAGGCAAACGGGCTACAAA
TAAAACGTCTTCGGTCAGACCAAGGAGGACAGTTTACAGGAGAAGTGTTC
CACCAGTTTTATGCAGAAAATGGCATCAAGCAAAATGTTTCTGCCGCCTA
CACGCCGCAGCAAAACGGTGTGGCGGAGCGCAGCTGGCTTAGCGTTTTCG
AGATGACCCGAAGTAAGATGATAACCGTCAACTTGGGTCGCAGGTATTGG
GCGGAGGCGGCGCGCGCGCCTGTGTATTGCTTAAATCGCGCCCCAACGCG
ACCGCAAAACGGAGGGACGCCGTGTGAGAAATGGCATGGCTCGATACCAA
AGCTTGACCACCTTCGTGTCGTCGGCTGCATGGCATACGTGATGTTCCAG
TCACAGCAAAGACGCAAGCTCGACGACAAGGCATGGGCGGAGGTGTTTCT
GGGGTACGACAAGGACAACCCGAGTTATCGCATTTATAACCCGGAAAACA
AGAGCGTCCAGTTGAGCAGGAACGTGAGGTTTGACGAGGAGGACTTCGTA
ACCGGTCATCGCGGACAGCAGGAGCACGACGGGACGCGAGAGATGGAAGA
TATTTGTTCAACACCGCCAGTCACGCCAGCGGTCACTCGATCCCGCGCCC
GAGGCGAGCAAGCATGCGTAAAAAACACGGAAGACCGGACGTCGGCGTCA
CAAATGCCGCCGATTTTGCCGACATATTCGCTGCCAGCCGCCAGCGCAAA
CCCATTCACCCGCGGTCGAAGACGCGCCATCAGCAGGGACAGTGGCACCC
GCGTCGCGGGGGAACACTACGAAGCAGTCAGGGACGGAAGCGCAGCGTCC
GCGAGATCGGTCACCAATACGAACACGGGCGAGAGCGAGGGAAAACCGCG
AAGAAGATCTAGGCACTACCGCGCGCGCGTGGCAAAAGTAAAAGACACTG
GCAACTTCACAGAGGCGGTATCTAAGGGAATGCCGAAATCCACGGCAGAA
GCATTAAAGGGTCCAGAGGCGGAAAAATGGCGCGCGGAAATGAAGGGAGA
ATGGGGGGCGTTGGTGGGAAATGGAACACGGGAAAGCGAAGACACAGGGA
GGTTATCGGCAGGGCGGAAGGCGATTCATACGAAATGGATTTTCAAGCGG
AAACTGAAGGAGGATGGCAGCGCGGCACACTACAAAGCGCGACTGGTGGC
TCAAGGCTTTTCCCAAGTGGAGGGTGAAGATTTATTTGAAACCAGCGCTC
CCATAGCTCGTATGTCGACGTTACATACTGTTTTTAGGCTGGCCGCCGAA
CATGATTTCGAATTAGAAGGTATGAACATAGATGCGGCGTATTTGAACGC
CCCGGTAGAAGAAGAGCTCCCGCGGTCGAAGACGCGCCATCAGCAGGGAC
AGTGGCACCCGCGTCGCGGGGGAACACTACGAAGCAGTCAGGGACGGAAG
CGCAGCGTCCGCGAGATCGGTCACCAATACGAACACGGGCGAGAGCGAGG
GAAAACCGCGAAGAAGATCTAGGCACTACCGCGCGCGCGTGGCAAAAGTA
AAAGACACTGGCAACTTCACAGAGGCGGTATCTAAGGGAATGCCGAAATC
CACGGCAGAAGCATTAAAGGGTCCAGAGGCGGAAAAATGGCGCGCGGAAA
TGAAGGGAGAATGGGGGGCGTTGGTGGGAAATGGAACACGGGAAAGCGAA
GACACAGGGAGGTTATCGGCAGGGCGGAAGGCGATTCATACGAAATGGAT
TTTCAAGCGGAAACTGAAGGAGGATGGCAGCGCGGCACACTACAAAGCGC
GACTGGTGGCTCAAGGCTTTTCCCAAGTGGAGGGTGAAGATTTATTTGAA
ACCAGCGCTCCCATAGCTCGTATGTCGACGTTACATACTGTTTTTAGGCT
GGCCGCCGAACATGATTTCGAATTAGAAGGTATGAACATAGATGCGGCGT
ATTTGAACGCCCCGGTAGAAGAAGAGCTTGTGCGTCGCCTGCGCAAAAGC
CTGTATGGCCTCAAGCAGAGCGGCCGTAACTGGAATGACACTCTCGACAA
TTTTCTTGTTGGGATAGGACTCGAGCGTTCCACTACCGACTCATGCTTGT
ACTTTTCTCGCGACGATGGGGGAGAGGCAGACCTTCTGGTGGCCGTGTAT
GTTGACGACCTGGTCATTGCTGGCAGTCGTGAGAAAACAGACGAGTTCAA
GCATAACATAATTCAGCATTTTAGAATGAAAGACTTGGGTTTTCTCTCAC
GCGTGTTGGGAATACAAGTACGACGTGACCGCCCTAATGGTACCATAGCT
ATCTCGTAGTGTGCGTCGCCTGCGCAAAAGCCTGTATGGCCTCAAGCAGA
GCGGCCGTAACTGGAATGACACTCTCGACAATTTTCTTGTTGGGATAGGA
CTCGAGCGTTCCACTACCGACTCATGCTTGTACTTTTCTCGCGACGATGG
GGGAGAGGCAGACCTTCTGGTGGCCGTGTATGTTGACGACCTGGTCATTG
CTGGCAGTCGTGAGAAAACAGACGAGTTCAAGCATAACATAATTCAGCAT
TTTAGAATGAAAGACTTGGGTTTTCTCTCACGCGTGTTGGGAATACAAGT
ACGACGTGACCGCCCTAATGGTACCATAGCTATCTCGTAG
back to top