prot_H-paniculata_contig1689.3855.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig1689.3855.1
Unique Nameprot_H-paniculata_contig1689.3855.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length241
Homology
BLAST of mRNA_H-paniculata_contig1689.3855.1 vs. uniprot
Match: D7FN49_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FN49_ECTSI)

HSP 1 Score: 125 bits (314), Expect = 3.540e-32
Identity = 71/141 (50.35%), Postives = 90/141 (63.83%), Query Frame = 0
Query:   74 LSPGKFARRMSEELGLPPTFMQPIARSISRQLLDSERVLNRWA-ERTAGPVTESVRRIDIDVRFRSIIYRDHLQWDVNCLSNSAELFARCTVADLALPQEMEPAIAFTIQQQLVDHRVEAARPDGSMRTLQTKATLSPHLS 213
            LSP +F+RR   ELG+  +F+QPIA+SI +QL++  R    WA E T  P  E+++ + IDVRFRS+I+RD LQWDVNC  NS E FAR TVADL LPQEMEP IA T  QQ+   R+ A     +    Q K    P +S
Sbjct:   39 LSPLEFSRRTCAELGIGVSFVQPIAQSIGQQLIEYGRKNPMWAVEGTIAPAGENIQTVIIDVRFRSVIFRDRLQWDVNCPYNSPEQFARITVADLNLPQEMEPIIALTTHQQVSRFRMAAPSSTTNNEDAQFKDVEGPCVS 179          
BLAST of mRNA_H-paniculata_contig1689.3855.1 vs. uniprot
Match: A0A835YTF3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YTF3_9STRA)

HSP 1 Score: 90.5 bits (223), Expect = 4.280e-17
Identity = 48/120 (40.00%), Postives = 74/120 (61.67%), Query Frame = 0
Query:   74 LSPGKFARRMSEELGLPPTFMQPIARSISRQLLDSERVLNRWAERTAG----PVTESVRRIDIDVRFRSIIYRDHLQWDVNCLSNSAELFARCTVADLALPQEMEPAIAFTIQQQLVDHR 189
            LSP  FA   + +L LP     P+AR+I  Q++ ++  L  W+  +      P  E++  I++++R  +++YRD  +WD+N   NS E FA  TVADLALPQ MEPAIA  +++QL ++R
Sbjct:  530 LSPEAFAAATAADLALPRKLEAPLARAIRAQVVTAQATLPVWSGSSGAAAMYPAGEALVPIELELRLGAVLYRDKFEWDMNEPLNSPEAFAARTVADLALPQPMEPAIALALREQLANYR 649          
BLAST of mRNA_H-paniculata_contig1689.3855.1 vs. uniprot
Match: A0A0P1AIR2_PLAHL (SWI-SNF chromatin remodeling complex, Snf5 subunit n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AIR2_PLAHL)

HSP 1 Score: 56.6 bits (135), Expect = 1.160e-5
Identity = 50/177 (28.25%), Postives = 80/177 (45.20%), Query Frame = 0
Query:   68 DRFLLQLSPGKFARRMSEELGLPPTFMQPIARSISRQLL--DSERVLNRWAERTAGPVTESVRRIDIDVRFRSIIYRDHLQWDVNCLSNSAELFARCTVADLALPQEMEPAIAFTIQQQLVDHRVEAARPDG-SMRTLQTKATLSP-------HLSHVQPVDQYEFNTRDWRDHRPL 234
            D  +   SP   A ++  +  +       IA SI RQ+L   S  V+N        P+      +D+ V   S+  RD  +WDV+    + ++FA    ADL LPQ  EPAI F+I +Q+V +R+  +  D      L  K T S        ++  + P+D    +T D +  +P+
Sbjct:  207 DAAIASCSPELLAMQIFHDEKMTDRLRDAIAESIRRQILLFTSSSVINLHKNTLLYPIY-----LDLIVDGYSL--RDQFEWDVSNDYRATQIFAATLCADLKLPQTFEPAIVFSIYEQVVAYRIVLSGQDWVGTNPLSDKETSSSQSFSRAGYIEVMPPLDDIIRSTEDTKLWQPV 376          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1689.3855.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FN49_ECTSI3.540e-3250.35Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835YTF3_9STRA4.280e-1740.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A0P1AIR2_PLAHL1.160e-528.25SWI-SNF chromatin remodeling complex, Snf5 subunit... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006939SNF5/SMARCB1/INI1PFAMPF04855SNF5coord: 130..199
e-value: 3.1E-13
score: 50.1
IPR006939SNF5/SMARCB1/INI1PANTHERPTHR10019SNF5coord: 75..194
NoneNo IPR availablePANTHERPTHR10019:SF5SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY B MEMBER 1coord: 75..194

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1689contigH-paniculata_contig1689:13239..15828 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1689.3855.1mRNA_H-paniculata_contig1689.3855.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig1689 10520..16334 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig1689.3855.1 ID=prot_H-paniculata_contig1689.3855.1|Name=mRNA_H-paniculata_contig1689.3855.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=241bp
MKPLLCNQQELSTHVVVLCDCIAFLPVNVGCLSCLVFCNFVERCDLPQRN
IVQIVRCKIQYRIIPRSDRFLLQLSPGKFARRMSEELGLPPTFMQPIARS
ISRQLLDSERVLNRWAERTAGPVTESVRRIDIDVRFRSIIYRDHLQWDVN
CLSNSAELFARCTVADLALPQEMEPAIAFTIQQQLVDHRVEAARPDGSMR
TLQTKATLSPHLSHVQPVDQYEFNTRDWRDHRPLARNDNS*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006939SNF5