mRNA_H-paniculata_contig16850.3838.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig16850.3838.1
Unique NamemRNA_H-paniculata_contig16850.3838.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig16850.3838.1 vs. uniprot
Match: D7FHL7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHL7_ECTSI)

HSP 1 Score: 77.4 bits (189), Expect = 1.340e-15
Identity = 36/54 (66.67%), Postives = 43/54 (79.63%), Query Frame = 1
Query:   19 LFMDLEPLMEEWAGLPLAPKSCYGVRIYGRDSVLANHVDRIETHVISAIINVAQ 180
            L+ DL P+MEEW+G  L   +CYGVR Y R S+LANHVDR++THVISAIINV Q
Sbjct:  159 LYQDLLPVMEEWSGTKLKSTACYGVRHYYRGSILANHVDRVDTHVISAIINVEQ 212          
BLAST of mRNA_H-paniculata_contig16850.3838.1 vs. uniprot
Match: A0A6H5JDK4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDK4_9PHAE)

HSP 1 Score: 75.9 bits (185), Expect = 6.270e-15
Identity = 34/51 (66.67%), Postives = 42/51 (82.35%), Query Frame = 1
Query:   19 LFMDLEPLMEEWAGLPLAPKSCYGVRIYGRDSVLANHVDRIETHVISAIIN 171
            L+ DL P+MEEW+G+ L   +CYGVR Y R S+LANHVDR++THVISAIIN
Sbjct:  159 LYQDLLPVMEEWSGIKLKSTACYGVRHYYRGSILANHVDRVDTHVISAIIN 209          
BLAST of mRNA_H-paniculata_contig16850.3838.1 vs. uniprot
Match: A0A7S2UYU0_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UYU0_9STRA)

HSP 1 Score: 66.6 bits (161), Expect = 4.980e-12
Identity = 34/61 (55.74%), Postives = 42/61 (68.85%), Query Frame = 1
Query:    1 GSSLQLLFMDLEPLMEEWAGL-PLAPKSCYGVRIYGRDSVLANHVDRIETHVISAIINVAQ 180
            G    LL  D++PL+E+WA +  L   S YG+R Y R SVL NHVD + THV+SAIINVAQ
Sbjct:   69 GQERTLLTQDIQPLLEDWADMYDLEMTSIYGIRQYTRGSVLRNHVDTVNTHVVSAIINVAQ 129          
BLAST of mRNA_H-paniculata_contig16850.3838.1 vs. uniprot
Match: A0A831ZFP2_9GAMM (Proline hydroxylase n=1 Tax=Crenotrichaceae bacterium TaxID=2268193 RepID=A0A831ZFP2_9GAMM)

HSP 1 Score: 62.0 bits (149), Expect = 1.100e-10
Identity = 28/56 (50.00%), Postives = 39/56 (69.64%), Query Frame = 1
Query:   13 QLLFMDLEPLMEEWAGLPLAPKSCYGVRIYGRDSVLANHVDRIETHVISAIINVAQ 180
            Q +   ++PL+E+W G  L P   YG+RIY   ++L +H DR+ETH+ISAIINV Q
Sbjct:   20 QTIHDTMKPLLEKWCGEALEPTYVYGIRIYHHKAILKSHRDRLETHIISAIINVDQ 75          
BLAST of mRNA_H-paniculata_contig16850.3838.1 vs. uniprot
Match: UPI0019D3808F (2OG-Fe(II) oxygenase n=1 Tax=Bowmanella dokdonensis TaxID=751969 RepID=UPI0019D3808F)

HSP 1 Score: 63.9 bits (154), Expect = 2.000e-10
Identity = 28/50 (56.00%), Postives = 38/50 (76.00%), Query Frame = 1
Query:   31 LEPLMEEWAGLPLAPKSCYGVRIYGRDSVLANHVDRIETHVISAIINVAQ 180
            L+PL+E+W G PLAP   YG+R+Y   ++L  H DR++TH+ISAIINV Q
Sbjct:  360 LKPLLEQWCGKPLAPTYVYGIRVYHHGAMLKLHRDRLDTHIISAIINVDQ 409          
BLAST of mRNA_H-paniculata_contig16850.3838.1 vs. uniprot
Match: UPI00037B83B9 (2OG-Fe(II) oxygenase n=1 Tax=Thiofilum flexile TaxID=125627 RepID=UPI00037B83B9)

HSP 1 Score: 63.5 bits (153), Expect = 2.730e-10
Identity = 30/56 (53.57%), Postives = 38/56 (67.86%), Query Frame = 1
Query:   13 QLLFMDLEPLMEEWAGLPLAPKSCYGVRIYGRDSVLANHVDRIETHVISAIINVAQ 180
            Q +F  + PL+EEW  L L P + YG+R Y R + L  HVDRI+TH +S IINVAQ
Sbjct:  356 QTIFTTICPLLEEWTQLELKPSAIYGIREYQRGATLKMHVDRIDTHQVSMIINVAQ 411          
BLAST of mRNA_H-paniculata_contig16850.3838.1 vs. uniprot
Match: F0Y7M0_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y7M0_AURAN)

HSP 1 Score: 63.5 bits (153), Expect = 2.780e-10
Identity = 30/58 (51.72%), Postives = 37/58 (63.79%), Query Frame = 1
Query:    1 GSSLQLLFMDLEPLMEEWAGLPLAPKSCYGVRIYGRDSVLANHVDRIETHVISAIINV 174
            GS    L  +L P ME WAG+ L     YGVR+YG  S L NH+DR ETHV+SAI ++
Sbjct:  904 GSLNNRLLDELRPRMEAWAGVELRNGQAYGVRVYGNGSTLVNHIDRSETHVVSAIFHI 961          
BLAST of mRNA_H-paniculata_contig16850.3838.1 vs. uniprot
Match: A0A7S2WA34_9STRA (Hypothetical protein (Fragment) n=2 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WA34_9STRA)

HSP 1 Score: 63.2 bits (152), Expect = 3.670e-10
Identity = 29/49 (59.18%), Postives = 37/49 (75.51%), Query Frame = 1
Query:   31 LEPLMEEWAGLPLAPKSCYGVRIYGRDSVLANHVDRIETHVISAIINVA 177
            L+PL EEWAG+ L P S YGVR+Y   S L +H+D +ETHVIS I++VA
Sbjct:  182 LKPLFEEWAGVDLEPTSVYGVRVYRNGSTLKDHLDVLETHVISGILHVA 230          
BLAST of mRNA_H-paniculata_contig16850.3838.1 vs. uniprot
Match: Q21FK1_SACD2 (2OG-Fe(II) oxygenase n=2 Tax=Saccharophagus degradans TaxID=86304 RepID=Q21FK1_SACD2)

HSP 1 Score: 62.8 bits (151), Expect = 5.110e-10
Identity = 30/56 (53.57%), Postives = 38/56 (67.86%), Query Frame = 1
Query:   13 QLLFMDLEPLMEEWAGLPLAPKSCYGVRIYGRDSVLANHVDRIETHVISAIINVAQ 180
            Q +  +L+P ME W   PLAP   YG+R Y R + L  H DR+ETH+ISAIIN+AQ
Sbjct:  364 QAVHDELKPKMEAWCNQPLAPTYVYGIREYHRGAKLKMHRDRLETHIISAIINIAQ 419          
BLAST of mRNA_H-paniculata_contig16850.3838.1 vs. uniprot
Match: A0A7S4A4C6_9STRA (Hypothetical protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4A4C6_9STRA)

HSP 1 Score: 62.0 bits (149), Expect = 9.540e-10
Identity = 30/58 (51.72%), Postives = 38/58 (65.52%), Query Frame = 1
Query:    4 SSLQLLFMD-LEPLMEEWAGLPLAPKSCYGVRIYGRDSVLANHVDRIETHVISAIINV 174
            S L    +D L P +EEW+G+ L     YGVR+YG  S L NH+DR ETHVISAI ++
Sbjct:  178 SQLNAKLLDGLRPNLEEWSGIELQNGQSYGVRVYGEGSTLVNHIDRCETHVISAIFHI 235          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig16850.3838.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FHL7_ECTSI1.340e-1566.67Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JDK4_9PHAE6.270e-1566.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S2UYU0_9STRA4.980e-1255.74Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A831ZFP2_9GAMM1.100e-1050.00Proline hydroxylase n=1 Tax=Crenotrichaceae bacter... [more]
UPI0019D3808F2.000e-1056.002OG-Fe(II) oxygenase n=1 Tax=Bowmanella dokdonensi... [more]
UPI00037B83B92.730e-1053.572OG-Fe(II) oxygenase n=1 Tax=Thiofilum flexile Tax... [more]
F0Y7M0_AURAN2.780e-1051.72Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A7S2WA34_9STRA3.670e-1059.18Hypothetical protein (Fragment) n=2 Tax=Rhizochrom... [more]
Q21FK1_SACD25.110e-1053.572OG-Fe(II) oxygenase n=2 Tax=Saccharophagus degrad... [more]
A0A7S4A4C6_9STRA9.540e-1051.72Hypothetical protein n=2 Tax=Pelagomonas calceolat... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig16850contigH-paniculata_contig16850:5379..5558 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score61.6
Seed ortholog evalue1.2e-07
Seed eggNOG ortholog203122.Sde_3273
KEGG rclassRC00478
KEGG koko:K00472
KEGG ReactionR01252
KEGG Pathwayko00330,ko01100,map00330,map01100
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG free text desc.Prolyl 4-hydroxylase alpha subunit homologues.
EggNOG OGs1NG7K@1224,1S7QH@1236,466EA@72275,COG3751@1,COG3751@2
EC1.14.11.2
COG Functional cat.O
Best tax levelAlteromonadaceae
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Exons1
Model size180
Cds size156
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929334.5154161-CDS-H-paniculata_contig16850:5378..55341622929334.5154161-CDS-H-paniculata_contig16850:5378..5534Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16850 5379..5534 -
1691480819.3332186-CDS-H-paniculata_contig16850:5378..55341691480819.3332186-CDS-H-paniculata_contig16850:5378..5534Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16850 5379..5534 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929334.5309405-UTR-H-paniculata_contig16850:5534..55581622929334.5309405-UTR-H-paniculata_contig16850:5534..5558Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig16850 5535..5558 -
1691480819.351122-UTR-H-paniculata_contig16850:5534..55581691480819.351122-UTR-H-paniculata_contig16850:5534..5558Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig16850 5535..5558 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig16850.3838.1prot_H-paniculata_contig16850.3838.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig16850 5379..5534 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig16850.3838.1

>prot_H-paniculata_contig16850.3838.1 ID=prot_H-paniculata_contig16850.3838.1|Name=mRNA_H-paniculata_contig16850.3838.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=52bp
MDLEPLMEEWAGLPLAPKSCYGVRIYGRDSVLANHVDRIETHVISAIINV
AQ
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mRNA from alignment at H-paniculata_contig16850:5379..5558-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig16850.3838.1 ID=mRNA_H-paniculata_contig16850.3838.1|Name=mRNA_H-paniculata_contig16850.3838.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=180bp|location=Sequence derived from alignment at H-paniculata_contig16850:5379..5558- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGTTCTTCTCTGCAGCTTCTCTTCATGGATTTGGAACCTCTCATGGAGGA ATGGGCAGGCTTGCCTCTGGCGCCCAAGTCTTGCTACGGAGTGCGCATCT ACGGGCGCGACAGCGTTCTGGCCAACCACGTCGACCGCATCGAAACACAC GTCATCTCCGCTATCATTAACGTCGCTCAA
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Coding sequence (CDS) from alignment at H-paniculata_contig16850:5379..5558-

>mRNA_H-paniculata_contig16850.3838.1 ID=mRNA_H-paniculata_contig16850.3838.1|Name=mRNA_H-paniculata_contig16850.3838.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=312bp|location=Sequence derived from alignment at H-paniculata_contig16850:5379..5558- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGATTTGGAACCTCTCATGGAGGAATGGGCAGGCTTGCCTCTGGCGCC
CAAGTCTTGCTACGGAGTGCGCATCTACGGGCGCGACAGCGTTCTGGCCA
ACCACGTCGACCGCATCGAAACACACGTCATCTCCGCTATCATTAACGTC
GCTCAAATGGATTTGGAACCTCTCATGGAGGAATGGGCAGGCTTGCCTCT
GGCGCCCAAGTCTTGCTACGGAGTGCGCATCTACGGGCGCGACAGCGTTC
TGGCCAACCACGTCGACCGCATCGAAACACACGTCATCTCCGCTATCATT
AACGTCGCTCAA
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