mRNA_H-paniculata_contig16843.3833.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig16843.3833.1
Unique NamemRNA_H-paniculata_contig16843.3833.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig16843.3833.1 vs. uniprot
Match: D7G465_ECTSI (RPAP3_C domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G465_ECTSI)

HSP 1 Score: 140 bits (352), Expect = 1.600e-35
Identity = 93/225 (41.33%), Postives = 119/225 (52.89%), Query Frame = 2
Query:   11 MEMLSFQKRGWQERSGAVVSRTPSKNSSADLQSSLRRARVAGGASRNTRCSGTLN-GALVVPADHCQFQRDWRRKCPTDDARCAYLRLVGPERVQKLFQVEMEPDLLGQMLMLICNGFPSSFIDDKRLNEGQP-----EIQPAGSTEASSGCREEHKVKPRAD-DKPTDAAAECMAWLSALSHTGRFGINIKFLEKKENCAVADLFDKLRKCLARRTEEDIATLR 664
            MEMLS  KRGWQ R G V   T    S+   ++  R  R     S +T  SG    G L  P DH QFQRDWRR+C T+  R  YLRL+GP+ V  LF+VEMEPD+LGQ+L ++C  FP   +  +RL+   P     E +    T   +G          A  DK    A  C+ WL ALS TGRF +NI FL  KE   +A  FD +   L    +E+I++LR
Sbjct:    1 MEMLSVPKRGWQGRVGGVAPTTKVSGSTGRQKAPRRTQR-----SVDTAISGGAKAGPLRAPKDHAQFQRDWRRRCCTNGERRDYLRLIGPKNVSALFRVEMEPDVLGQVLSVVCQEFP---LHPQRLDTAMPATPENEERSGAPTRGDAGGSAAETANGSASADKA--GARFCVEWLWALSRTGRFAVNILFLADKEKQELARAFDLISAVLGDEDDEEISSLR 215          
BLAST of mRNA_H-paniculata_contig16843.3833.1 vs. uniprot
Match: A0A6H5JJ59_9PHAE (RPAP3_C domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJ59_9PHAE)

HSP 1 Score: 132 bits (332), Expect = 6.770e-32
Identity = 90/228 (39.47%), Postives = 114/228 (50.00%), Query Frame = 2
Query:    2 RKEMEMLSFQKRGWQERSGAVVSRTPSKNSSADLQSSLRRARVAGGASRNTRCSGTLNGALVVPADHCQFQRDWRRKCPTDDARCAYLRLVGPERVQKLFQVEMEPDLLGQMLMLICNGFPSSFIDDKRLNEGQPEIQPAGSTEASSGCREEHK------VKPRADDKPTDAAAE-CMAWLSALSHTGRFGINIKFLEKKENCAVADLFDKLRKCLARRTEEDIATLR 664
            RKEMEMLS  KRGWQ R G V   T         ++  R  R    A R     G   G L  P DH QFQRDWRR+C T+  R  YLRLVGP+    LF+VEMEPD+LGQ++ ++C  FP      +R++   P  Q     E  SG            +    +    +A A  C+ WL ALS TGRF +NI FL   E  A+A  FD          +E+I++LR
Sbjct:   68 RKEMEMLSDPKRGWQGRVGGVAPTTNVSGRIGRQKAPRRTQRSVDTALRG----GAKAGPLRAPKDHAQFQRDWRRRCRTNGERRDYLRLVGPKNASALFRVEMEPDVLGQVISVVCEEFP---FQPQRIDAATPATQ---ENEERSGAPTRGDAAGSTAITANGNASADEAGARLCLEWLRALSRTGRFAVNILFLADNEKQALARAFDLTTAVFG---DEEISSLR 282          
BLAST of mRNA_H-paniculata_contig16843.3833.1 vs. uniprot
Match: A0A836C7R2_9STRA (RPAP3_C domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C7R2_9STRA)

HSP 1 Score: 97.4 bits (241), Expect = 5.310e-20
Identity = 66/223 (29.60%), Postives = 102/223 (45.74%), Query Frame = 2
Query:   11 MEMLSFQKRGWQERSGAVVSRTPSKNSSADLQSSLRRARVAGGASRNTRCSGTLN-GALVVPADHCQFQRDWRRKCPTDDARCAYLRLVGPERVQKLFQVEMEPDLLGQMLMLI--CNGFPSSFIDDKRLNEGQPEIQPAGSTEASSGCREEHKVKPRADDKPTDAAAECMAWLSALSHTGRFGINIKFLEKKENCAVADLFDKLRKCLARRTEEDIATLRSL 670
            ME L  Q++GW++      S+ P K+              AG A+  T  S  +  G L  P    +F+RDWRR+C T     A L LVG   + KLF+VE++P LLGQ+L ++  C    S+    +  N    +   A   +A  G                ++ A C+AWL  +  TGRF +N+ FL  +E  A+ ++ D L      +  E++  LR +
Sbjct:    1 MESLGHQQKGWRK----TASKPPPKHK-------------AGAAADKTASSKLVRKGPLQAPTTQSEFERDWRRRCKTHADMVALLGLVGASGMPKLFKVELDPQLLGQILGVLSRCAAADSALPPCQPRNSSSDDGDAANGHQAGGG----------------ESVARCIAWLRGIQGTGRFALNVHFLSDRETAALGEMVDALMPLAEAQQAEELRELRKV 190          
BLAST of mRNA_H-paniculata_contig16843.3833.1 vs. uniprot
Match: A0A7R9V6A5_9CHLO (Hypothetical protein n=1 Tax=Chlamydomonas euryale TaxID=1486919 RepID=A0A7R9V6A5_9CHLO)

HSP 1 Score: 66.2 bits (160), Expect = 1.400e-8
Identity = 46/142 (32.39%), Postives = 68/142 (47.89%), Query Frame = 2
Query:  191 PADHCQFQRDWRRKCPTDDARCAYLRLVGPERVQKLFQVEMEPDLLGQMLMLICNGFPSSFIDDKRLNEGQPEIQPAGSTEASSGCREEHKVKPRADDKPTDAAAECMAWLSALSHTGRFGINIKFLEKKENCAVADLFDKL 616
            P+    F R+WRR CP+ DA+  YLRLVGP  +Q+LF+VE+  D L  +L  +     + ++    ++ G  E    GS  A S                   A   ++ L+ALS  GRFG+ +K L       +A LF +L
Sbjct:  106 PSTSGDFYREWRRNCPSLDAKYRYLRLVGPNGLQQLFKVEISVDALKDVLTAL----EACWL----VHAGAAEDGAEGSGAALS------------------EAVFVVSVLAALSQAGRFGLTLKLLGSGPKAVLASLFSQL 221          
BLAST of mRNA_H-paniculata_contig16843.3833.1 vs. uniprot
Match: A0A7S2C2K5_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2C2K5_9STRA)

HSP 1 Score: 65.1 bits (157), Expect = 2.770e-8
Identity = 47/157 (29.94%), Postives = 71/157 (45.22%), Query Frame = 2
Query:  191 PADHCQFQRDWRRKCPTDDARCAYLRLVGPERVQKLFQVEMEPDLLGQMLMLICNGFPSSFIDDKRLNEGQPEIQPAGSTE-----ASSGCREEHKVKPRADDKPTDAAAE----------CMAWLSALSHTGRFGINIKFLEKKENCAVADLFDKL 616
            PA   QF+RDWRR C    A+  YLRL G E V  +F+ E++  LLG++L  +                   E++  G+TE     A++  R              +A+A            ++ L AL  TGRF +N+ FLE K+  +VA + + L
Sbjct:   84 PATSMQFERDWRRHCKELGAQLRYLRLCGSETVLAVFKTEIDAALLGKLLAALAGR--------------AAELRAGGATEGGRDWAAAEVRXXXXXXXXXXXXXXEASAAEAARLEEPLFLLSILRALPQTGRFSLNVNFLEDKDKASVATVVEWL 226          
BLAST of mRNA_H-paniculata_contig16843.3833.1 vs. uniprot
Match: A0A7S2C1V5_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2C1V5_9STRA)

HSP 1 Score: 65.1 bits (157), Expect = 6.520e-8
Identity = 47/157 (29.94%), Postives = 71/157 (45.22%), Query Frame = 2
Query:  191 PADHCQFQRDWRRKCPTDDARCAYLRLVGPERVQKLFQVEMEPDLLGQMLMLICNGFPSSFIDDKRLNEGQPEIQPAGSTE-----ASSGCREEHKVKPRADDKPTDAAAE----------CMAWLSALSHTGRFGINIKFLEKKENCAVADLFDKL 616
            PA   QF+RDWRR C    A+  YLRL G E V  +F+ E++  LLG++L  +                   E++  G+TE     A++  R              +A+A            ++ L AL  TGRF +N+ FLE K+  +VA + + L
Sbjct:  179 PATSMQFERDWRRHCKELGAQLRYLRLCGSETVLAVFKTEIDAALLGKLLAALAGR--------------AAELRAGGATEGGRDWAAAEVRXXXXXXXXXXXXXXEASAAEAARLEEPLFLLSILRALPQTGRFSLNVNFLEDKDKASVATVVEWL 321          
BLAST of mRNA_H-paniculata_contig16843.3833.1 vs. uniprot
Match: W4H561_9STRA (Uncharacterized protein n=3 Tax=Aphanomyces astaci TaxID=112090 RepID=W4H561_9STRA)

HSP 1 Score: 60.1 bits (144), Expect = 1.360e-6
Identity = 44/161 (27.33%), Postives = 72/161 (44.72%), Query Frame = 2
Query:  179 ALVVPADHCQFQRDWRRKCPTDDARCAYLRLVGPERVQKLFQVEMEPDLLGQMLMLICNGF----PSSFIDDKRLNEGQPEIQPAGSTEASSGCREEHKVKPRADDKPTDAAAECMAWLSALSHTGRFGINIKFLEKKENCAVADLFDKLRKCLARRTEED 649
            A V PA   +F R WRR C T   +  YL++  P RV KLFQ E++ DL+ Q++  +   F    P++ +DD +L     E+  A  T                           ++ L A++ TGRF + + FL   +  +V  L  ++ + L    ++D
Sbjct:  101 AAVPPATSVEFIRTWRRSCLTQRDKYKYLQVTTPPRVAKLFQAELDSDLMLQIVACLSAQFVNLNPNNDVDDYQL-----ELAHAWFT---------------------------LSLLEAVTKTGRFLLTMSFLTADQAASVIHLVARVHEVLGVHDDDD 229          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig16843.3833.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
D7G465_ECTSI1.600e-3541.33RPAP3_C domain-containing protein n=1 Tax=Ectocarp... [more]
A0A6H5JJ59_9PHAE6.770e-3239.47RPAP3_C domain-containing protein n=1 Tax=Ectocarp... [more]
A0A836C7R2_9STRA5.310e-2029.60RPAP3_C domain-containing protein n=1 Tax=Tribonem... [more]
A0A7R9V6A5_9CHLO1.400e-832.39Hypothetical protein n=1 Tax=Chlamydomonas euryale... [more]
A0A7S2C2K5_9STRA2.770e-829.94Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A7S2C1V5_9STRA6.520e-829.94Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
W4H561_9STRA1.360e-627.33Uncharacterized protein n=3 Tax=Aphanomyces astaci... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig16843contigH-paniculata_contig16843:1583..2873 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score71.6
Seed ortholog evalue5.2e-10
Seed eggNOG ortholog157072.XP_008863691.1
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005856,GO:0005858,GO:0005875,GO:0005929,GO:0005930,GO:0015630,GO:0030286,GO:0032838,GO:0032991,GO:0036157,GO:0042802,GO:0042803,GO:0042995,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044422,GO:0044424,GO:0044430,GO:0044441,GO:0044444,GO:0044446,GO:0044447,GO:0044463,GO:0044464,GO:0046983,GO:0097014,GO:0099568,GO:0120025,GO:0120038,GO:1902494
EggNOG free text desc.Dynein attachment factor N-terminus
EggNOG OGs2CFN8@1,2S3J2@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size1291
Cds size681
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig16843.3833.1prot_H-paniculata_contig16843.3833.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig16843 1593..2273 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929333.7726512-UTR-H-paniculata_contig16843:1582..15921622929333.7726512-UTR-H-paniculata_contig16843:1582..1592Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig16843 1583..1592 +
1691480818.9991314-UTR-H-paniculata_contig16843:1582..15921691480818.9991314-UTR-H-paniculata_contig16843:1582..1592Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig16843 1583..1592 +
1622929333.8016665-UTR-H-paniculata_contig16843:2273..28731622929333.8016665-UTR-H-paniculata_contig16843:2273..2873Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig16843 2274..2873 +
1691480819.0177252-UTR-H-paniculata_contig16843:2273..28731691480819.0177252-UTR-H-paniculata_contig16843:2273..2873Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig16843 2274..2873 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929333.7855036-CDS-H-paniculata_contig16843:1592..22731622929333.7855036-CDS-H-paniculata_contig16843:1592..2273Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16843 1593..2273 +
1691480819.0085115-CDS-H-paniculata_contig16843:1592..22731691480819.0085115-CDS-H-paniculata_contig16843:1592..2273Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16843 1593..2273 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig16843.3833.1

>prot_H-paniculata_contig16843.3833.1 ID=prot_H-paniculata_contig16843.3833.1|Name=mRNA_H-paniculata_contig16843.3833.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=227bp
MEMLSFQKRGWQERSGAVVSRTPSKNSSADLQSSLRRARVAGGASRNTRC
SGTLNGALVVPADHCQFQRDWRRKCPTDDARCAYLRLVGPERVQKLFQVE
MEPDLLGQMLMLICNGFPSSFIDDKRLNEGQPEIQPAGSTEASSGCREEH
KVKPRADDKPTDAAAECMAWLSALSHTGRFGINIKFLEKKENCAVADLFD
KLRKCLARRTEEDIATLRSLQQAYSL*
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mRNA from alignment at H-paniculata_contig16843:1583..2873+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig16843.3833.1 ID=mRNA_H-paniculata_contig16843.3833.1|Name=mRNA_H-paniculata_contig16843.3833.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1291bp|location=Sequence derived from alignment at H-paniculata_contig16843:1583..2873+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCGCAAGGAAATGGAGATGCTTTCATTTCAGAAGCGAGGCTGGCAAGAGC GGTCCGGCGCGGTGGTCTCACGTACACCAAGTAAGAACTCCAGTGCTGAT CTTCAATCCTCGTTAAGAAGAGCACGTGTCGCTGGAGGGGCTTCGAGGAA TACGCGCTGTAGTGGCACGTTGAACGGCGCGCTTGTCGTGCCTGCTGATC ACTGTCAGTTTCAACGAGATTGGCGGCGAAAGTGTCCCACGGATGACGCG CGATGCGCTTACCTTCGCCTCGTTGGGCCTGAGAGGGTCCAAAAACTGTT TCAAGTGGAAATGGAGCCAGATCTACTGGGACAAATGCTCATGCTCATTT GCAACGGATTTCCTTCAAGTTTCATTGATGACAAACGTTTGAACGAGGGG CAGCCAGAAATCCAACCGGCAGGGTCGACAGAGGCAAGTAGTGGTTGCCG TGAAGAACACAAAGTCAAGCCACGAGCGGACGATAAACCTACGGATGCCG CTGCAGAATGTATGGCGTGGCTTTCTGCTCTGAGTCATACAGGGCGATTC GGAATCAATATCAAGTTCTTGGAGAAGAAAGAAAATTGTGCGGTTGCTGA CCTGTTCGACAAATTGAGAAAATGTTTGGCCCGCCGTACGGAGGAAGATA TTGCTACATTACGATCTTTGCAGCAAGCGTACTCACTCTAGGTCCTTTCA AGCCGCTATTGCGACATCATCGCTTCCATTGTTCTGTGCTTTTGATGTTT CGGGGGTAAGAGGTCCCCCTACTGTAGGTTTACACAACCCTACTGAGTAC CCAACAGCGAGGATGTGAAGGAGACATTTTCGAGCAACGGCTTGACAAGT CTGTGTGGGTGTAGATATTTGTGTCCGATGGAACGTCTCCTGCCTTGCCA CATCACTAGCGTTGGTTCAGAGAGGTGCCCCTCTGCGTGGTGGTACATAT ATATATATATATATCGTAGGTTCGAAGCTTCGTTTAATAACGGTGATATG TGTCAAGTTTCTACCAGTCCAAGATATTGAAGTTGTTTGTGTAAAAATTG GAATTTTGCGTAGATTGGACGACAAAATTGTAAGCGCTGCTTAGGTACAT CTACCGCACAAGATCGAGCGACAACTAGTAGTGCCTCGCACTTCTGGCGA GGTATGCGAGAAATTTTGGCGTGAGCGTTGCACACCATTATGGTAAAGAG AATCACTCTCGTGGTTTTGTGTAGCAGACTAAATGGCTGCATCGCTAATC GTAGCGAATAACATGAATATTTCACAATGGATATTGTGTAC
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Coding sequence (CDS) from alignment at H-paniculata_contig16843:1583..2873+

>mRNA_H-paniculata_contig16843.3833.1 ID=mRNA_H-paniculata_contig16843.3833.1|Name=mRNA_H-paniculata_contig16843.3833.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1362bp|location=Sequence derived from alignment at H-paniculata_contig16843:1583..2873+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGAGATGCTTTCATTTCAGAAGCGAGGCTGGCAAGAGCGGTCCGGCGC
GGTGGTCTCACGTACACCAAGTAAGAACTCCAGTGCTGATCTTCAATCCT
CGTTAAGAAGAGCACGTGTCGCTGGAGGGGCTTCGAGGAATACGCGCTGT
AGTGGCACGTTGAACGGCGCGCTTGTCGTGCCTGCTGATCACTGTCAGTT
TCAACGAGATTGGCGGCGAAAGTGTCCCACGGATGACGCGCGATGCGCTT
ACCTTCGCCTCGTTGGGCCTGAGAGGGTCCAAAAACTGTTTCAAGTGGAA
ATGGAGCCAGATCTACTGGGACAAATGCTCATGCTCATTTGCAACGGATT
TCCTTCAAGTTTCATTGATGACAAACGTTTGAACGAGGGGCAGCCAGAAA
TCCAACCGGCAGGGTCGACAGAGGCAAGTAGTGGTTGCCGTGAAGAACAC
AAAGTCAAGCCACGAGCGGACGATAAACCTACGGATGCCGCTGCAGAATG
TATGGCGTGGCTTTCTGCTCTGAGTCATACAGGGCGATTCGGAATCAATA
TCAAGTTCTTGGAGAAGAAAGAAAATTGTGCGGTTGCTGACCTGTTCGAC
AAATTGAGAAAATGTTTGGCCCGCCGTACGGAGGAAGATATTGCTACATT
ACGATCTTTGCAGCAAGCGTACTCACTCTAGATGGAGATGCTTTCATTTC
AGAAGCGAGGCTGGCAAGAGCGGTCCGGCGCGGTGGTCTCACGTACACCA
AGTAAGAACTCCAGTGCTGATCTTCAATCCTCGTTAAGAAGAGCACGTGT
CGCTGGAGGGGCTTCGAGGAATACGCGCTGTAGTGGCACGTTGAACGGCG
CGCTTGTCGTGCCTGCTGATCACTGTCAGTTTCAACGAGATTGGCGGCGA
AAGTGTCCCACGGATGACGCGCGATGCGCTTACCTTCGCCTCGTTGGGCC
TGAGAGGGTCCAAAAACTGTTTCAAGTGGAAATGGAGCCAGATCTACTGG
GACAAATGCTCATGCTCATTTGCAACGGATTTCCTTCAAGTTTCATTGAT
GACAAACGTTTGAACGAGGGGCAGCCAGAAATCCAACCGGCAGGGTCGAC
AGAGGCAAGTAGTGGTTGCCGTGAAGAACACAAAGTCAAGCCACGAGCGG
ACGATAAACCTACGGATGCCGCTGCAGAATGTATGGCGTGGCTTTCTGCT
CTGAGTCATACAGGGCGATTCGGAATCAATATCAAGTTCTTGGAGAAGAA
AGAAAATTGTGCGGTTGCTGACCTGTTCGACAAATTGAGAAAATGTTTGG
CCCGCCGTACGGAGGAAGATATTGCTACATTACGATCTTTGCAGCAAGCG
TACTCACTCTAG
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