mRNA_H-paniculata_contig16843.3833.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig16843.3833.1 vs. uniprot
Match: D7G465_ECTSI (RPAP3_C domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G465_ECTSI) HSP 1 Score: 140 bits (352), Expect = 1.600e-35 Identity = 93/225 (41.33%), Postives = 119/225 (52.89%), Query Frame = 2
Query: 11 MEMLSFQKRGWQERSGAVVSRTPSKNSSADLQSSLRRARVAGGASRNTRCSGTLN-GALVVPADHCQFQRDWRRKCPTDDARCAYLRLVGPERVQKLFQVEMEPDLLGQMLMLICNGFPSSFIDDKRLNEGQP-----EIQPAGSTEASSGCREEHKVKPRAD-DKPTDAAAECMAWLSALSHTGRFGINIKFLEKKENCAVADLFDKLRKCLARRTEEDIATLR 664
MEMLS KRGWQ R G V T S+ ++ R R S +T SG G L P DH QFQRDWRR+C T+ R YLRL+GP+ V LF+VEMEPD+LGQ+L ++C FP + +RL+ P E + T +G A DK A C+ WL ALS TGRF +NI FL KE +A FD + L +E+I++LR
Sbjct: 1 MEMLSVPKRGWQGRVGGVAPTTKVSGSTGRQKAPRRTQR-----SVDTAISGGAKAGPLRAPKDHAQFQRDWRRRCCTNGERRDYLRLIGPKNVSALFRVEMEPDVLGQVLSVVCQEFP---LHPQRLDTAMPATPENEERSGAPTRGDAGGSAAETANGSASADKA--GARFCVEWLWALSRTGRFAVNILFLADKEKQELARAFDLISAVLGDEDDEEISSLR 215
BLAST of mRNA_H-paniculata_contig16843.3833.1 vs. uniprot
Match: A0A6H5JJ59_9PHAE (RPAP3_C domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJ59_9PHAE) HSP 1 Score: 132 bits (332), Expect = 6.770e-32 Identity = 90/228 (39.47%), Postives = 114/228 (50.00%), Query Frame = 2
Query: 2 RKEMEMLSFQKRGWQERSGAVVSRTPSKNSSADLQSSLRRARVAGGASRNTRCSGTLNGALVVPADHCQFQRDWRRKCPTDDARCAYLRLVGPERVQKLFQVEMEPDLLGQMLMLICNGFPSSFIDDKRLNEGQPEIQPAGSTEASSGCREEHK------VKPRADDKPTDAAAE-CMAWLSALSHTGRFGINIKFLEKKENCAVADLFDKLRKCLARRTEEDIATLR 664
RKEMEMLS KRGWQ R G V T ++ R R A R G G L P DH QFQRDWRR+C T+ R YLRLVGP+ LF+VEMEPD+LGQ++ ++C FP +R++ P Q E SG + + +A A C+ WL ALS TGRF +NI FL E A+A FD +E+I++LR
Sbjct: 68 RKEMEMLSDPKRGWQGRVGGVAPTTNVSGRIGRQKAPRRTQRSVDTALRG----GAKAGPLRAPKDHAQFQRDWRRRCRTNGERRDYLRLVGPKNASALFRVEMEPDVLGQVISVVCEEFP---FQPQRIDAATPATQ---ENEERSGAPTRGDAAGSTAITANGNASADEAGARLCLEWLRALSRTGRFAVNILFLADNEKQALARAFDLTTAVFG---DEEISSLR 282
BLAST of mRNA_H-paniculata_contig16843.3833.1 vs. uniprot
Match: A0A836C7R2_9STRA (RPAP3_C domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C7R2_9STRA) HSP 1 Score: 97.4 bits (241), Expect = 5.310e-20 Identity = 66/223 (29.60%), Postives = 102/223 (45.74%), Query Frame = 2
Query: 11 MEMLSFQKRGWQERSGAVVSRTPSKNSSADLQSSLRRARVAGGASRNTRCSGTLN-GALVVPADHCQFQRDWRRKCPTDDARCAYLRLVGPERVQKLFQVEMEPDLLGQMLMLI--CNGFPSSFIDDKRLNEGQPEIQPAGSTEASSGCREEHKVKPRADDKPTDAAAECMAWLSALSHTGRFGINIKFLEKKENCAVADLFDKLRKCLARRTEEDIATLRSL 670
ME L Q++GW++ S+ P K+ AG A+ T S + G L P +F+RDWRR+C T A L LVG + KLF+VE++P LLGQ+L ++ C S+ + N + A +A G ++ A C+AWL + TGRF +N+ FL +E A+ ++ D L + E++ LR +
Sbjct: 1 MESLGHQQKGWRK----TASKPPPKHK-------------AGAAADKTASSKLVRKGPLQAPTTQSEFERDWRRRCKTHADMVALLGLVGASGMPKLFKVELDPQLLGQILGVLSRCAAADSALPPCQPRNSSSDDGDAANGHQAGGG----------------ESVARCIAWLRGIQGTGRFALNVHFLSDRETAALGEMVDALMPLAEAQQAEELRELRKV 190
BLAST of mRNA_H-paniculata_contig16843.3833.1 vs. uniprot
Match: A0A7R9V6A5_9CHLO (Hypothetical protein n=1 Tax=Chlamydomonas euryale TaxID=1486919 RepID=A0A7R9V6A5_9CHLO) HSP 1 Score: 66.2 bits (160), Expect = 1.400e-8 Identity = 46/142 (32.39%), Postives = 68/142 (47.89%), Query Frame = 2
Query: 191 PADHCQFQRDWRRKCPTDDARCAYLRLVGPERVQKLFQVEMEPDLLGQMLMLICNGFPSSFIDDKRLNEGQPEIQPAGSTEASSGCREEHKVKPRADDKPTDAAAECMAWLSALSHTGRFGINIKFLEKKENCAVADLFDKL 616
P+ F R+WRR CP+ DA+ YLRLVGP +Q+LF+VE+ D L +L + + ++ ++ G E GS A S A ++ L+ALS GRFG+ +K L +A LF +L
Sbjct: 106 PSTSGDFYREWRRNCPSLDAKYRYLRLVGPNGLQQLFKVEISVDALKDVLTAL----EACWL----VHAGAAEDGAEGSGAALS------------------EAVFVVSVLAALSQAGRFGLTLKLLGSGPKAVLASLFSQL 221
BLAST of mRNA_H-paniculata_contig16843.3833.1 vs. uniprot
Match: A0A7S2C2K5_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2C2K5_9STRA) HSP 1 Score: 65.1 bits (157), Expect = 2.770e-8 Identity = 47/157 (29.94%), Postives = 71/157 (45.22%), Query Frame = 2
Query: 191 PADHCQFQRDWRRKCPTDDARCAYLRLVGPERVQKLFQVEMEPDLLGQMLMLICNGFPSSFIDDKRLNEGQPEIQPAGSTE-----ASSGCREEHKVKPRADDKPTDAAAE----------CMAWLSALSHTGRFGINIKFLEKKENCAVADLFDKL 616
PA QF+RDWRR C A+ YLRL G E V +F+ E++ LLG++L + E++ G+TE A++ R +A+A ++ L AL TGRF +N+ FLE K+ +VA + + L
Sbjct: 84 PATSMQFERDWRRHCKELGAQLRYLRLCGSETVLAVFKTEIDAALLGKLLAALAGR--------------AAELRAGGATEGGRDWAAAEVRXXXXXXXXXXXXXXEASAAEAARLEEPLFLLSILRALPQTGRFSLNVNFLEDKDKASVATVVEWL 226
BLAST of mRNA_H-paniculata_contig16843.3833.1 vs. uniprot
Match: A0A7S2C1V5_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2C1V5_9STRA) HSP 1 Score: 65.1 bits (157), Expect = 6.520e-8 Identity = 47/157 (29.94%), Postives = 71/157 (45.22%), Query Frame = 2
Query: 191 PADHCQFQRDWRRKCPTDDARCAYLRLVGPERVQKLFQVEMEPDLLGQMLMLICNGFPSSFIDDKRLNEGQPEIQPAGSTE-----ASSGCREEHKVKPRADDKPTDAAAE----------CMAWLSALSHTGRFGINIKFLEKKENCAVADLFDKL 616
PA QF+RDWRR C A+ YLRL G E V +F+ E++ LLG++L + E++ G+TE A++ R +A+A ++ L AL TGRF +N+ FLE K+ +VA + + L
Sbjct: 179 PATSMQFERDWRRHCKELGAQLRYLRLCGSETVLAVFKTEIDAALLGKLLAALAGR--------------AAELRAGGATEGGRDWAAAEVRXXXXXXXXXXXXXXEASAAEAARLEEPLFLLSILRALPQTGRFSLNVNFLEDKDKASVATVVEWL 321
BLAST of mRNA_H-paniculata_contig16843.3833.1 vs. uniprot
Match: W4H561_9STRA (Uncharacterized protein n=3 Tax=Aphanomyces astaci TaxID=112090 RepID=W4H561_9STRA) HSP 1 Score: 60.1 bits (144), Expect = 1.360e-6 Identity = 44/161 (27.33%), Postives = 72/161 (44.72%), Query Frame = 2
Query: 179 ALVVPADHCQFQRDWRRKCPTDDARCAYLRLVGPERVQKLFQVEMEPDLLGQMLMLICNGF----PSSFIDDKRLNEGQPEIQPAGSTEASSGCREEHKVKPRADDKPTDAAAECMAWLSALSHTGRFGINIKFLEKKENCAVADLFDKLRKCLARRTEED 649
A V PA +F R WRR C T + YL++ P RV KLFQ E++ DL+ Q++ + F P++ +DD +L E+ A T ++ L A++ TGRF + + FL + +V L ++ + L ++D
Sbjct: 101 AAVPPATSVEFIRTWRRSCLTQRDKYKYLQVTTPPRVAKLFQAELDSDLMLQIVACLSAQFVNLNPNNDVDDYQL-----ELAHAWFT---------------------------LSLLEAVTKTGRFLLTMSFLTADQAASVIHLVARVHEVLGVHDDDD 229 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig16843.3833.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 7
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig16843.3833.1 >prot_H-paniculata_contig16843.3833.1 ID=prot_H-paniculata_contig16843.3833.1|Name=mRNA_H-paniculata_contig16843.3833.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=227bp MEMLSFQKRGWQERSGAVVSRTPSKNSSADLQSSLRRARVAGGASRNTRCback to top mRNA from alignment at H-paniculata_contig16843:1583..2873+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig16843.3833.1 ID=mRNA_H-paniculata_contig16843.3833.1|Name=mRNA_H-paniculata_contig16843.3833.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1291bp|location=Sequence derived from alignment at H-paniculata_contig16843:1583..2873+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig16843:1583..2873+ >mRNA_H-paniculata_contig16843.3833.1 ID=mRNA_H-paniculata_contig16843.3833.1|Name=mRNA_H-paniculata_contig16843.3833.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1362bp|location=Sequence derived from alignment at H-paniculata_contig16843:1583..2873+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |