mRNA_H-paniculata_contig1684.3832.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1684.3832.1
Unique NamemRNA_H-paniculata_contig1684.3832.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig1684.3832.1 vs. uniprot
Match: D7G1V9_ECTSI (Dynein light chain n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1V9_ECTSI)

HSP 1 Score: 204 bits (518), Expect = 1.710e-66
Identity = 93/102 (91.18%), Postives = 96/102 (94.12%), Query Frame = 1
Query:    1 MGEEVPDWAQMWGAKVKMPTDMGDDMLRDAINTCRDTLDQCGDFEAEGLAAAEKIKKHFDSRWDPSWHVIIGRNFGAFVTHETTCFVYFYLAEKAIMMYKAG 306
            MGE VPDWAQMWGAKVKMPTDM DDMLRDAI TCRD LD C DFEAEGLAAAEKIKKHFD+RWDPSWHVIIGRNFG+FVTHETTCFVYFYLA+KAIMMYKAG
Sbjct:    1 MGEMVPDWAQMWGAKVKMPTDMRDDMLRDAIETCRDALDHCADFEAEGLAAAEKIKKHFDARWDPSWHVIIGRNFGSFVTHETTCFVYFYLADKAIMMYKAG 102          
BLAST of mRNA_H-paniculata_contig1684.3832.1 vs. uniprot
Match: A0A836CJA1_9STRA (Dynein light chain n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJA1_9STRA)

HSP 1 Score: 159 bits (403), Expect = 5.930e-49
Identity = 68/96 (70.83%), Postives = 83/96 (86.46%), Query Frame = 1
Query:   19 DWAQMWGAKVKMPTDMGDDMLRDAINTCRDTLDQCGDFEAEGLAAAEKIKKHFDSRWDPSWHVIIGRNFGAFVTHETTCFVYFYLAEKAIMMYKAG 306
            DW  MWGAKVK+P DM DD+L+DAI+T R+ LD+C DFEAEGLA+AEKIK+H D +WDP WHV+IGRNFG+FVTHET  F+YFY+ +KA+MMYKAG
Sbjct:    7 DWRMMWGAKVKLPLDMPDDILKDAIDTSREVLDKCHDFEAEGLASAEKIKRHLDEQWDPHWHVVIGRNFGSFVTHETRMFLYFYIGDKAVMMYKAG 102          
BLAST of mRNA_H-paniculata_contig1684.3832.1 vs. uniprot
Match: A0A7S2W886_9STRA (Dynein light chain n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2W886_9STRA)

HSP 1 Score: 147 bits (372), Expect = 3.150e-44
Identity = 66/102 (64.71%), Postives = 80/102 (78.43%), Query Frame = 1
Query:    1 MGEEVPDWAQMWGAKVKMPTDMGDDMLRDAINTCRDTLDQCGDFEAEGLAAAEKIKKHFDSRWDPSWHVIIGRNFGAFVTHETTCFVYFYLAEKAIMMYKAG 306
            MGEEVP+W  MWGAKVK P D+ DDML+DAI T +  + +  DFEAEG+  AEKIK+ FD RW P WHVIIG+NFG+FVTHET  F+YFY  +KA+M+YKAG
Sbjct:    1 MGEEVPEWQMMWGAKVKTPVDVPDDMLKDAILTSQRLIGEATDFEAEGVDVAEKIKREFDERWTPYWHVIIGKNFGSFVTHETKRFLYFYFDDKAVMIYKAG 102          
BLAST of mRNA_H-paniculata_contig1684.3832.1 vs. uniprot
Match: A0A7S1TPD3_9STRA (Dynein light chain n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TPD3_9STRA)

HSP 1 Score: 147 bits (372), Expect = 3.250e-44
Identity = 64/103 (62.14%), Postives = 82/103 (79.61%), Query Frame = 1
Query:    1 MGE-EVPDWAQMWGAKVKMPTDMGDDMLRDAINTCRDTLDQCGDFEAEGLAAAEKIKKHFDSRWDPSWHVIIGRNFGAFVTHETTCFVYFYLAEKAIMMYKAG 306
            MG+ E+ +W+ MWGA+VK+P DMGDDML+DA+ T R   ++  DFE +GL AAE IK  FD +W P+WHV++GR FG+FVTHET CFVYFYL +KA+MMYKAG
Sbjct:    1 MGDGEIQEWSTMWGARVKVPCDMGDDMLKDAVETTRSVFEEFPDFENDGLKAAEAIKLAFDEKWTPNWHVVVGRGFGSFVTHETKCFVYFYLDDKAVMMYKAG 103          
BLAST of mRNA_H-paniculata_contig1684.3832.1 vs. uniprot
Match: A0A7S1CI82_9STRA (Dynein light chain n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CI82_9STRA)

HSP 1 Score: 130 bits (327), Expect = 2.330e-37
Identity = 57/103 (55.34%), Postives = 75/103 (72.82%), Query Frame = 1
Query:    1 MGEEVP-DWAQMWGAKVKMPTDMGDDMLRDAINTCRDTLDQCGDFEAEGLAAAEKIKKHFDSRWDPSWHVIIGRNFGAFVTHETTCFVYFYLAEKAIMMYKAG 306
            MGE  P +W  MWGAKVK P+D+ DDML DAI   R  L+   D+E+EG A  +K+KK FD +W P WH ++G NFG+FVTHE   FVYFY+A+KA++++KAG
Sbjct:    1 MGESAPVEWKHMWGAKVKWPSDLPDDMLEDAITVTRAALEGIEDWESEGDAVVDKLKKTFDEKWGPHWHAVVGTNFGSFVTHEARRFVYFYVADKAVLLFKAG 103          
BLAST of mRNA_H-paniculata_contig1684.3832.1 vs. uniprot
Match: H3GHN7_PHYRM (Dynein light chain n=21 Tax=Oomycota TaxID=4762 RepID=H3GHN7_PHYRM)

HSP 1 Score: 122 bits (306), Expect = 3.680e-34
Identity = 60/101 (59.41%), Postives = 68/101 (67.33%), Query Frame = 1
Query:   10 EVPDWAQMWGAKVKMPTDMGDDMLRDAIN--TCRDTLDQCGDFEAEGLAAAEKIKKHFDSRWDPSWHVIIGRNFGAFVTHETTCFVYFYLAEKAIMMYKAG 306
            E P W  MWGAKVKMP DM DD+L DAI   T R T     ++E  GLA  E+IK H D  WDP W V IGRNFG+FVTH T  FV+FY  EKA+M+YKAG
Sbjct:    3 EAPSWQHMWGAKVKMPCDMEDDVLEDAIKHVTSRLTKYDTEEWEKNGLAVCEEIKAHLDEAWDPHWVVCIGRNFGSFVTHVTRNFVFFYYNEKAVMIYKAG 103          
BLAST of mRNA_H-paniculata_contig1684.3832.1 vs. uniprot
Match: A0A7S2WLS4_9STRA (Dynein light chain n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2WLS4_9STRA)

HSP 1 Score: 120 bits (300), Expect = 3.110e-33
Identity = 54/102 (52.94%), Postives = 70/102 (68.63%), Query Frame = 1
Query:    1 MGEEVPDWAQMWGAKVKMPTDMGDDMLRDAINTCRDTLDQCGDFEAEGLAAAEKIKKHFDSRWDPSWHVIIGRNFGAFVTHETTCFVYFYLAEKAIMMYKAG 306
            MGEEV +W  +WGAKVK P +M DD+L+DAI T  + L  C +FE+ G  A + IK H D +W P W   IGRNFG+ V+HET  FV+FY  +KA+M+YK G
Sbjct:    3 MGEEVREWQTIWGAKVKTPVEMPDDILKDAITTVTNELAACENFESNGNLAVQNIKDHMDHKWSPHWCCFIGRNFGSKVSHETRRFVFFYHNDKAVMLYKIG 104          
BLAST of mRNA_H-paniculata_contig1684.3832.1 vs. uniprot
Match: A0A5D6XID8_9STRA (Dynein light chain n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XID8_9STRA)

HSP 1 Score: 119 bits (297), Expect = 8.630e-33
Identity = 57/101 (56.44%), Postives = 68/101 (67.33%), Query Frame = 1
Query:   10 EVPDWAQMWGAKVKMPTDMGDDMLRDAIN--TCRDTLDQCGDFEAEGLAAAEKIKKHFDSRWDPSWHVIIGRNFGAFVTHETTCFVYFYLAEKAIMMYKAG 306
            E P+W  MWGAKVKMP DM DD+L DAI   T R       ++E +GL   E+IK H D  W+P W V IGRNFG++VTH T  FVYFY  EKA+M+YKAG
Sbjct:    3 EAPNWQHMWGAKVKMPCDMEDDVLEDAIKHVTSRLAKYDTEEWEKQGLTVCEEIKAHMDELWEPHWVVCIGRNFGSYVTHVTRNFVYFYFNEKAVMVYKAG 103          
BLAST of mRNA_H-paniculata_contig1684.3832.1 vs. uniprot
Match: A0A1V9ZER7_9STRA (Dynein light chain n=4 Tax=Saprolegniaceae TaxID=4764 RepID=A0A1V9ZER7_9STRA)

HSP 1 Score: 117 bits (294), Expect = 2.470e-32
Identity = 55/101 (54.46%), Postives = 68/101 (67.33%), Query Frame = 1
Query:   10 EVPDWAQMWGAKVKMPTDMGDDMLRDAINTCRDTLDQCG--DFEAEGLAAAEKIKKHFDSRWDPSWHVIIGRNFGAFVTHETTCFVYFYLAEKAIMMYKAG 306
            E P W  MWGA+VK P DM DD+L D I      L+Q    ++E +GLA  E+I+ H D  WDP+W V IGRNFG++VTH T  FVYFY  EKAI++YKAG
Sbjct:    3 EAPSWQNMWGARVKTPCDMEDDVLEDVIKYVTQRLEQFDTEEWEKQGLAVCEEIRDHLDKAWDPAWVVCIGRNFGSYVTHVTRNFVYFYYNEKAILIYKAG 103          
BLAST of mRNA_H-paniculata_contig1684.3832.1 vs. uniprot
Match: A0A2D4BQP4_PYTIN (Dynein light chain n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BQP4_PYTIN)

HSP 1 Score: 117 bits (292), Expect = 4.980e-32
Identity = 57/101 (56.44%), Postives = 67/101 (66.34%), Query Frame = 1
Query:   10 EVPDWAQMWGAKVKMPTDMGDDMLRDAIN--TCRDTLDQCGDFEAEGLAAAEKIKKHFDSRWDPSWHVIIGRNFGAFVTHETTCFVYFYLAEKAIMMYKAG 306
            E P W  MWGAKVKMP DM DD+L D I   T R T     ++E +GL+  E+IK H D  W+P W V IGRNFG+FVTH T   V+FY  EKAIM+YKAG
Sbjct:    3 EAPSWQHMWGAKVKMPCDMEDDVLEDTIKIVTSRLTKYDTEEWETKGLSVCEEIKAHLDETWEPHWVVCIGRNFGSFVTHVTRNXVFFYFNEKAIMVYKAG 103          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1684.3832.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G1V9_ECTSI1.710e-6691.18Dynein light chain n=1 Tax=Ectocarpus siliculosus ... [more]
A0A836CJA1_9STRA5.930e-4970.83Dynein light chain n=1 Tax=Tribonema minus TaxID=3... [more]
A0A7S2W886_9STRA3.150e-4464.71Dynein light chain n=1 Tax=Rhizochromulina marina ... [more]
A0A7S1TPD3_9STRA3.250e-4462.14Dynein light chain n=1 Tax=Phaeomonas parva TaxID=... [more]
A0A7S1CI82_9STRA2.330e-3755.34Dynein light chain n=1 Tax=Bicosoecida sp. CB-2014... [more]
H3GHN7_PHYRM3.680e-3459.41Dynein light chain n=21 Tax=Oomycota TaxID=4762 Re... [more]
A0A7S2WLS4_9STRA3.110e-3352.94Dynein light chain n=1 Tax=Eucampia antarctica Tax... [more]
A0A5D6XID8_9STRA8.630e-3356.44Dynein light chain n=1 Tax=Pythium brassicum TaxID... [more]
A0A1V9ZER7_9STRA2.470e-3254.46Dynein light chain n=4 Tax=Saprolegniaceae TaxID=4... [more]
A0A2D4BQP4_PYTIN4.980e-3256.44Dynein light chain n=1 Tax=Pythium insidiosum TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1684contigH-paniculata_contig1684:13487..14323 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score202.6
Seed ortholog evalue8.9e-50
Seed eggNOG ortholog2880.D7G1V9
KEGG koko:K10418
KEGG Pathwayko04962,map04962
Hectar predicted targeting categoryother localisation
EggNOG free text desc.positive regulation of ATP-dependent microtubule motor activity, plus-end-directed
EggNOG OGsKOG3430@1,KOG3430@2759
Ec32 ortholog descriptionDynein light chain, type 1/2
Ec32 orthologEc-07_003930.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04812
Exons3
Model size309
Cds size309
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1684.3832.1prot_H-paniculata_contig1684.3832.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1684 13487..14323 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929333.6866481-CDS-H-paniculata_contig1684:13486..135441622929333.6866481-CDS-H-paniculata_contig1684:13486..13544Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1684 13487..13544 -
1691480818.968682-CDS-H-paniculata_contig1684:13486..135441691480818.968682-CDS-H-paniculata_contig1684:13486..13544Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1684 13487..13544 -
1622929333.7045488-CDS-H-paniculata_contig1684:13817..139261622929333.7045488-CDS-H-paniculata_contig1684:13817..13926Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1684 13818..13926 -
1691480818.9790492-CDS-H-paniculata_contig1684:13817..139261691480818.9790492-CDS-H-paniculata_contig1684:13817..13926Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1684 13818..13926 -
1622929333.722378-CDS-H-paniculata_contig1684:14181..143231622929333.722378-CDS-H-paniculata_contig1684:14181..14323Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1684 14182..14323 -
1691480818.9875853-CDS-H-paniculata_contig1684:14181..143231691480818.9875853-CDS-H-paniculata_contig1684:14181..14323Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1684 14182..14323 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1684.3832.1

>prot_H-paniculata_contig1684.3832.1 ID=prot_H-paniculata_contig1684.3832.1|Name=mRNA_H-paniculata_contig1684.3832.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=103bp
MGEEVPDWAQMWGAKVKMPTDMGDDMLRDAINTCRDTLDQCGDFEAEGLA
AAEKIKKHFDSRWDPSWHVIIGRNFGAFVTHETTCFVYFYLAEKAIMMYK
AG*
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mRNA from alignment at H-paniculata_contig1684:13487..14323-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1684.3832.1 ID=mRNA_H-paniculata_contig1684.3832.1|Name=mRNA_H-paniculata_contig1684.3832.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=837bp|location=Sequence derived from alignment at H-paniculata_contig1684:13487..14323- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGGAGAAGAAGTGCCGGATTGGGCCCAGATGTGGGGGGCGAAGGTGAA AATGCCTACGGACATGGGAGACGATATGCTGCGGGACGCGATCAACACTT GCCGGGATACGCTGGACCAGTGCGGGGATTTTGAGGCAGAAGGTTTGTAT GACAAGCAGTAGTGACACACGTCACATATCCAACAATGCATATAGTCGTT GCTATTAACGTCAACAGTTCACTTTTGAGTCTAAAACTACGGATGTCTCT CGAACTTTACGAAGCTCCCCCTCGCCCCCCCACCCCCAGTGATATCTTAA CGGCACTAATACAAAAGCATTCTTGGTCATGAACGTTTCAGCTGACCTCG GCATCACCGGGCGGGGTGATGGATGAATTCGCTCGCGTGAACCACAGGTT TGGCAGCGGCGGAAAAAATCAAGAAGCACTTTGACTCACGGTGGGACCCT AGCTGGCACGTAATTATCGGGCGCAACTTTGGGGCGTTCGTTACGCACGA AACGACGTGAGTAGCAAATGCTTGGATTGTGACCCATGCTCCAAACTCGT TAGAGTATATATATTAACAGCAATTATGTTACAGTCGTTGCGACGACTTG AGACCGCGTATGTGGTGTAAATATGCTGTTTTGTTTATAAAGCAATCAAA CAATCAGAAATTATTCAATTTATCATTGAAACCACCACTCACACCCCGCC CCCGCCCCCACCCCCGCCCCCCTGGTATCCTTTCTCGCGCTATGTTTGGC GTCTCGCCGTTTGGAAACGGGTGGAACAGGTGCTTTGTTTATTTTTACCT GGCAGAAAAAGCGATAATGATGTATAAGGCCGGCTAG
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Coding sequence (CDS) from alignment at H-paniculata_contig1684:13487..14323-

>mRNA_H-paniculata_contig1684.3832.1 ID=mRNA_H-paniculata_contig1684.3832.1|Name=mRNA_H-paniculata_contig1684.3832.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=618bp|location=Sequence derived from alignment at H-paniculata_contig1684:13487..14323- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGGAGAAGAAGTGCCGGATTGGGCCCAGATGTGGGGGGCGAAGGTGAA
AATGCCTACGGACATGGGAGACGATATGCTGCGGGACGCGATCAACACTT
GCCGGGATACGCTGGACCAGTGCGGGGATTTTGAGGCAGAAGATGGGAGA
AGAAGTGCCGGATTGGGCCCAGATGTGGGGGGCGAAGGTGAAAATGCCTA
CGGACATGGGAGACGATATGCTGCGGGACGCGATCAACACTTGCCGGGAT
ACGCTGGACCAGTGCGGGGATTTTGAGGCAGAAGGTTTGGCAGCGGCGGA
AAAAATCAAGAAGCACTTTGACTCACGGTGGGACCCTAGCTGGCACGTAA
TTATCGGGCGCAACTTTGGGGCGTTCGTTACGCACGAAACGACGTTTGGC
AGCGGCGGAAAAAATCAAGAAGCACTTTGACTCACGGTGGGACCCTAGCT
GGCACGTAATTATCGGGCGCAACTTTGGGGCGTTCGTTACGCACGAAACG
ACGTGCTTTGTTTATTTTTACCTGGCAGAAAAAGCGATAATGATGTATAA
GGCCGGCTAGGTGCTTTGTTTATTTTTACCTGGCAGAAAAAGCGATAATG
ATGTATAAGGCCGGCTAG
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