mRNA_H-paniculata_contig1684.3832.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig1684.3832.1 vs. uniprot
Match: D7G1V9_ECTSI (Dynein light chain n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1V9_ECTSI) HSP 1 Score: 204 bits (518), Expect = 1.710e-66 Identity = 93/102 (91.18%), Postives = 96/102 (94.12%), Query Frame = 1
Query: 1 MGEEVPDWAQMWGAKVKMPTDMGDDMLRDAINTCRDTLDQCGDFEAEGLAAAEKIKKHFDSRWDPSWHVIIGRNFGAFVTHETTCFVYFYLAEKAIMMYKAG 306
MGE VPDWAQMWGAKVKMPTDM DDMLRDAI TCRD LD C DFEAEGLAAAEKIKKHFD+RWDPSWHVIIGRNFG+FVTHETTCFVYFYLA+KAIMMYKAG
Sbjct: 1 MGEMVPDWAQMWGAKVKMPTDMRDDMLRDAIETCRDALDHCADFEAEGLAAAEKIKKHFDARWDPSWHVIIGRNFGSFVTHETTCFVYFYLADKAIMMYKAG 102
BLAST of mRNA_H-paniculata_contig1684.3832.1 vs. uniprot
Match: A0A836CJA1_9STRA (Dynein light chain n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJA1_9STRA) HSP 1 Score: 159 bits (403), Expect = 5.930e-49 Identity = 68/96 (70.83%), Postives = 83/96 (86.46%), Query Frame = 1
Query: 19 DWAQMWGAKVKMPTDMGDDMLRDAINTCRDTLDQCGDFEAEGLAAAEKIKKHFDSRWDPSWHVIIGRNFGAFVTHETTCFVYFYLAEKAIMMYKAG 306
DW MWGAKVK+P DM DD+L+DAI+T R+ LD+C DFEAEGLA+AEKIK+H D +WDP WHV+IGRNFG+FVTHET F+YFY+ +KA+MMYKAG
Sbjct: 7 DWRMMWGAKVKLPLDMPDDILKDAIDTSREVLDKCHDFEAEGLASAEKIKRHLDEQWDPHWHVVIGRNFGSFVTHETRMFLYFYIGDKAVMMYKAG 102
BLAST of mRNA_H-paniculata_contig1684.3832.1 vs. uniprot
Match: A0A7S2W886_9STRA (Dynein light chain n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2W886_9STRA) HSP 1 Score: 147 bits (372), Expect = 3.150e-44 Identity = 66/102 (64.71%), Postives = 80/102 (78.43%), Query Frame = 1
Query: 1 MGEEVPDWAQMWGAKVKMPTDMGDDMLRDAINTCRDTLDQCGDFEAEGLAAAEKIKKHFDSRWDPSWHVIIGRNFGAFVTHETTCFVYFYLAEKAIMMYKAG 306
MGEEVP+W MWGAKVK P D+ DDML+DAI T + + + DFEAEG+ AEKIK+ FD RW P WHVIIG+NFG+FVTHET F+YFY +KA+M+YKAG
Sbjct: 1 MGEEVPEWQMMWGAKVKTPVDVPDDMLKDAILTSQRLIGEATDFEAEGVDVAEKIKREFDERWTPYWHVIIGKNFGSFVTHETKRFLYFYFDDKAVMIYKAG 102
BLAST of mRNA_H-paniculata_contig1684.3832.1 vs. uniprot
Match: A0A7S1TPD3_9STRA (Dynein light chain n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TPD3_9STRA) HSP 1 Score: 147 bits (372), Expect = 3.250e-44 Identity = 64/103 (62.14%), Postives = 82/103 (79.61%), Query Frame = 1
Query: 1 MGE-EVPDWAQMWGAKVKMPTDMGDDMLRDAINTCRDTLDQCGDFEAEGLAAAEKIKKHFDSRWDPSWHVIIGRNFGAFVTHETTCFVYFYLAEKAIMMYKAG 306
MG+ E+ +W+ MWGA+VK+P DMGDDML+DA+ T R ++ DFE +GL AAE IK FD +W P+WHV++GR FG+FVTHET CFVYFYL +KA+MMYKAG
Sbjct: 1 MGDGEIQEWSTMWGARVKVPCDMGDDMLKDAVETTRSVFEEFPDFENDGLKAAEAIKLAFDEKWTPNWHVVVGRGFGSFVTHETKCFVYFYLDDKAVMMYKAG 103
BLAST of mRNA_H-paniculata_contig1684.3832.1 vs. uniprot
Match: A0A7S1CI82_9STRA (Dynein light chain n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CI82_9STRA) HSP 1 Score: 130 bits (327), Expect = 2.330e-37 Identity = 57/103 (55.34%), Postives = 75/103 (72.82%), Query Frame = 1
Query: 1 MGEEVP-DWAQMWGAKVKMPTDMGDDMLRDAINTCRDTLDQCGDFEAEGLAAAEKIKKHFDSRWDPSWHVIIGRNFGAFVTHETTCFVYFYLAEKAIMMYKAG 306
MGE P +W MWGAKVK P+D+ DDML DAI R L+ D+E+EG A +K+KK FD +W P WH ++G NFG+FVTHE FVYFY+A+KA++++KAG
Sbjct: 1 MGESAPVEWKHMWGAKVKWPSDLPDDMLEDAITVTRAALEGIEDWESEGDAVVDKLKKTFDEKWGPHWHAVVGTNFGSFVTHEARRFVYFYVADKAVLLFKAG 103
BLAST of mRNA_H-paniculata_contig1684.3832.1 vs. uniprot
Match: H3GHN7_PHYRM (Dynein light chain n=21 Tax=Oomycota TaxID=4762 RepID=H3GHN7_PHYRM) HSP 1 Score: 122 bits (306), Expect = 3.680e-34 Identity = 60/101 (59.41%), Postives = 68/101 (67.33%), Query Frame = 1
Query: 10 EVPDWAQMWGAKVKMPTDMGDDMLRDAIN--TCRDTLDQCGDFEAEGLAAAEKIKKHFDSRWDPSWHVIIGRNFGAFVTHETTCFVYFYLAEKAIMMYKAG 306
E P W MWGAKVKMP DM DD+L DAI T R T ++E GLA E+IK H D WDP W V IGRNFG+FVTH T FV+FY EKA+M+YKAG
Sbjct: 3 EAPSWQHMWGAKVKMPCDMEDDVLEDAIKHVTSRLTKYDTEEWEKNGLAVCEEIKAHLDEAWDPHWVVCIGRNFGSFVTHVTRNFVFFYYNEKAVMIYKAG 103
BLAST of mRNA_H-paniculata_contig1684.3832.1 vs. uniprot
Match: A0A7S2WLS4_9STRA (Dynein light chain n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2WLS4_9STRA) HSP 1 Score: 120 bits (300), Expect = 3.110e-33 Identity = 54/102 (52.94%), Postives = 70/102 (68.63%), Query Frame = 1
Query: 1 MGEEVPDWAQMWGAKVKMPTDMGDDMLRDAINTCRDTLDQCGDFEAEGLAAAEKIKKHFDSRWDPSWHVIIGRNFGAFVTHETTCFVYFYLAEKAIMMYKAG 306
MGEEV +W +WGAKVK P +M DD+L+DAI T + L C +FE+ G A + IK H D +W P W IGRNFG+ V+HET FV+FY +KA+M+YK G
Sbjct: 3 MGEEVREWQTIWGAKVKTPVEMPDDILKDAITTVTNELAACENFESNGNLAVQNIKDHMDHKWSPHWCCFIGRNFGSKVSHETRRFVFFYHNDKAVMLYKIG 104
BLAST of mRNA_H-paniculata_contig1684.3832.1 vs. uniprot
Match: A0A5D6XID8_9STRA (Dynein light chain n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XID8_9STRA) HSP 1 Score: 119 bits (297), Expect = 8.630e-33 Identity = 57/101 (56.44%), Postives = 68/101 (67.33%), Query Frame = 1
Query: 10 EVPDWAQMWGAKVKMPTDMGDDMLRDAIN--TCRDTLDQCGDFEAEGLAAAEKIKKHFDSRWDPSWHVIIGRNFGAFVTHETTCFVYFYLAEKAIMMYKAG 306
E P+W MWGAKVKMP DM DD+L DAI T R ++E +GL E+IK H D W+P W V IGRNFG++VTH T FVYFY EKA+M+YKAG
Sbjct: 3 EAPNWQHMWGAKVKMPCDMEDDVLEDAIKHVTSRLAKYDTEEWEKQGLTVCEEIKAHMDELWEPHWVVCIGRNFGSYVTHVTRNFVYFYFNEKAVMVYKAG 103
BLAST of mRNA_H-paniculata_contig1684.3832.1 vs. uniprot
Match: A0A1V9ZER7_9STRA (Dynein light chain n=4 Tax=Saprolegniaceae TaxID=4764 RepID=A0A1V9ZER7_9STRA) HSP 1 Score: 117 bits (294), Expect = 2.470e-32 Identity = 55/101 (54.46%), Postives = 68/101 (67.33%), Query Frame = 1
Query: 10 EVPDWAQMWGAKVKMPTDMGDDMLRDAINTCRDTLDQCG--DFEAEGLAAAEKIKKHFDSRWDPSWHVIIGRNFGAFVTHETTCFVYFYLAEKAIMMYKAG 306
E P W MWGA+VK P DM DD+L D I L+Q ++E +GLA E+I+ H D WDP+W V IGRNFG++VTH T FVYFY EKAI++YKAG
Sbjct: 3 EAPSWQNMWGARVKTPCDMEDDVLEDVIKYVTQRLEQFDTEEWEKQGLAVCEEIRDHLDKAWDPAWVVCIGRNFGSYVTHVTRNFVYFYYNEKAILIYKAG 103
BLAST of mRNA_H-paniculata_contig1684.3832.1 vs. uniprot
Match: A0A2D4BQP4_PYTIN (Dynein light chain n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BQP4_PYTIN) HSP 1 Score: 117 bits (292), Expect = 4.980e-32 Identity = 57/101 (56.44%), Postives = 67/101 (66.34%), Query Frame = 1
Query: 10 EVPDWAQMWGAKVKMPTDMGDDMLRDAIN--TCRDTLDQCGDFEAEGLAAAEKIKKHFDSRWDPSWHVIIGRNFGAFVTHETTCFVYFYLAEKAIMMYKAG 306
E P W MWGAKVKMP DM DD+L D I T R T ++E +GL+ E+IK H D W+P W V IGRNFG+FVTH T V+FY EKAIM+YKAG
Sbjct: 3 EAPSWQHMWGAKVKMPCDMEDDVLEDTIKIVTSRLTKYDTEEWETKGLSVCEEIKAHLDETWEPHWVVCIGRNFGSFVTHVTRNXVFFYFNEKAIMVYKAG 103 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1684.3832.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig1684.3832.1 >prot_H-paniculata_contig1684.3832.1 ID=prot_H-paniculata_contig1684.3832.1|Name=mRNA_H-paniculata_contig1684.3832.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=103bp MGEEVPDWAQMWGAKVKMPTDMGDDMLRDAINTCRDTLDQCGDFEAEGLAback to top mRNA from alignment at H-paniculata_contig1684:13487..14323- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig1684.3832.1 ID=mRNA_H-paniculata_contig1684.3832.1|Name=mRNA_H-paniculata_contig1684.3832.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=837bp|location=Sequence derived from alignment at H-paniculata_contig1684:13487..14323- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig1684:13487..14323- >mRNA_H-paniculata_contig1684.3832.1 ID=mRNA_H-paniculata_contig1684.3832.1|Name=mRNA_H-paniculata_contig1684.3832.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=618bp|location=Sequence derived from alignment at H-paniculata_contig1684:13487..14323- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |