prot_H-paniculata_contig1675.3805.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig1675.3805.1
Unique Nameprot_H-paniculata_contig1675.3805.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length965
Homology
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BLAST of mRNA_H-paniculata_contig1675.3805.1 vs. uniprot
Match: D8LLH6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LLH6_ECTSI)

HSP 1 Score: 170 bits (430), Expect = 9.520e-40
Identity = 156/502 (31.08%), Postives = 201/502 (40.04%), Query Frame = 0 
Query:  474 GPVLL-IGKPSPKEVKKLASTRLSSWARKFTEPRTYVSPAVPILEPIKDDYLSGFGRSYIEAKWGGSDGKKREGGKXXXXXXXXXNGNEQGGGDKVGREENSGGAENSPREKEGVAASFVTEPNGTQENEPAQGKKGHDEGEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATGGSSDVGRASRRHGVYVRNLSYGLCSANALRGIFSEFGRITFASMVPSKHGT-----AEVYFATAEGAAKAVAASGRSIMGRAVSVRQL-LRGTARYFVDPEDEARKAPRNA-------CANCG------ERGHTADKCRXXXXXXXXXXXXXXXEDTCPNVCCSNCLQTGHESNVCPKEKRAVRRPVXXXXXXXXXXXXXXXRTDDDGAEEGFSCIHCRDAGHTSCGPEMQLIVGESLDCLSQCWNCGTWDHSPEEQCTAPSQEAIFRACCFTPGESNSSSGFRKSNGHTPRRQIYGACHECGQSGHFMSQCP 955
            GPVL  +G+P  K+++K+A  RLS WA KFT  RTY  PAVP++EPI DDYL+ FGRSY EAK   +  KK           XXX    Q G      +EN GG +     KEG +     E N T E + A  +    EG                                                  + +    ++HGV+V NL Y LC    L  +FS FGR+T   +     G      A VYF TAE A KA+AA G  I GR V +R++ L    RYFV+PE +A KA   A       C  CG      E GH AD C                    P   CS C + GH  + C    +                           ++  FSCI CRD GHT CG E  L+ G        C NCG   H     C   ++  I R C +    ++S+             + Y  C+ CG+ GH  S+CP
Sbjct:  263 GPVLFAVGQPMSKKMRKMAKGRLSKWALKFTGTRTYAPPAVPVIEPINDDYLASFGRSYAEAKSLTAQDKKENTATQDDDGDXXXXXXSQAG------DENGGGXD-----KEGPS---XXEKNSTAEKDAAGREAAKTEGSGSPTK-------------------------------------------KNSLRGGRKKHGVFVVNLLYTLCDEEKLESLFSAFGRVTAVVLTRPPEGQKVSGIASVYFDTAEEAQKALAADGMDIRGRCVGIREVRLSVDKRYFVEPE-QAAKATNKAKPLEETRCTLCGAIGHDDEEGHLADACPYVDVMEEG-----------PEPYCSVCGKAGHSIDACETACKGK-------------------------SQLKFSCITCRDDGHTQCGKETILVFGNERGHAMTCCNCGLERHD-WRSCPHQTEAEILRECGYR--FNSSAXXXXXXXXXXXXXKTYMVCYNCGKQGHGKSECP 667
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1675.3805.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LLH6_ECTSI9.520e-4031.08Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 218..261
NoneNo IPR availableGENE3D4.10.60.10coord: 756..803
e-value: 8.6E-7
score: 30.6
NoneNo IPR availableGENE3D4.10.60.10coord: 804..853
e-value: 4.5E-8
score: 34.7
NoneNo IPR availablePANTHERPTHR46543FAMILY NOT NAMEDcoord: 596..958
IPR001878Zinc finger, CCHC-typeSMARTSM00343c2hcfinal6coord: 786..802
e-value: 5.4
score: 6.7
coord: 829..845
e-value: 0.048
score: 19.3
coord: 766..782
e-value: 0.016
score: 22.3
coord: 940..956
e-value: 0.0094
score: 23.7
coord: 885..902
e-value: 34.0
score: 1.7
coord: 804..820
e-value: 0.18
score: 15.8
IPR001878Zinc finger, CCHC-typePFAMPF00098zf-CCHCcoord: 940..955
e-value: 0.0029
score: 17.6
IPR001878Zinc finger, CCHC-typePROSITEPS50158ZF_CCHCcoord: 941..956
score: 9.801
IPR001878Zinc finger, CCHC-typePROSITEPS50158ZF_CCHCcoord: 830..845
score: 8.647
IPR001878Zinc finger, CCHC-typePROSITEPS50158ZF_CCHCcoord: 767..781
score: 9.158
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 674..742
e-value: 9.4E-8
score: 41.8
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 675..739
e-value: 9.5E-8
score: 31.8
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 673..746
score: 11.418
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 666..748
e-value: 1.6E-9
score: 39.8
IPR036875Zinc finger, CCHC-type superfamilySUPERFAMILY57756Retrovirus zinc finger-like domainscoord: 761..802
IPR036875Zinc finger, CCHC-type superfamilySUPERFAMILY57756Retrovirus zinc finger-like domainscoord: 802..846
IPR036875Zinc finger, CCHC-type superfamilySUPERFAMILY57756Retrovirus zinc finger-like domainscoord: 931..960
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 675..751

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1675contigH-paniculata_contig1675:13701..21403 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1675.3805.1mRNA_H-paniculata_contig1675.3805.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig1675 13644..21403 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig1675.3805.1 ID=prot_H-paniculata_contig1675.3805.1|Name=mRNA_H-paniculata_contig1675.3805.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=965bp
MSRLSYSESRDGMGGKEEEESAVVEGLSVDAGASEENQEGGGSSSLVQRP
VEVRLTRSQKRQRAKAAGKAAAAAAAAAATTTETGRASPSNSVESGATTP
ISLSSYSLMGVPDDENDVGRDAGGDDQDVGVIPSGADRCFYTFLFPPSIG
ADGDSGRQSPSLMTRSKSKKKRAQPLATPAVRSRRNRRKAGAPEEATPED
GAEGAATPSLKKKKGRQRKGWKAKLRQVEKENEEAVALVSNGEAERNKQE
GKEEEEQDEQRLASHGSQGNNKRKNPIAHKKDKKQQQLQQQRDTEEPGNE
GNYDGKPHAEVINVNGHADVTDITFASNRSNSGGGSGSGEFTGALLPDFG
GCPFGGSGGGGNGVDNDGVPTAVEVGTVVDLTGSDTDGDDGDGKGQQEED
KESKRDEEEGEDANGNGDQVEEATTVVTPAGKRRKIEGGGGGGIGGGGGS
GYVEGSTTPGGSAREEIADEEDMGPVLLIGKPSPKEVKKLASTRLSSWAR
KFTEPRTYVSPAVPILEPIKDDYLSGFGRSYIEAKWGGSDGKKREGGKGK
GKSKDKDNGNEQGGGDKVGREENSGGAENSPREKEGVAASFVTEPNGTQE
NEPAQGKKGHDEGEEEEEDEDDEEDSSESGGDTDSDSGTNMSLGSSSGAE
EEAEAGAGATGGSSDVGRASRRHGVYVRNLSYGLCSANALRGIFSEFGRI
TFASMVPSKHGTAEVYFATAEGAAKAVAASGRSIMGRAVSVRQLLRGTAR
YFVDPEDEARKAPRNACANCGERGHTADKCRAPSTLCVACGYQGHGEDTC
PNVCCSNCLQTGHESNVCPKEKRAVRRPVCSVCGGWGHKSSDCPRTDDDG
AEEGFSCIHCRDAGHTSCGPEMQLIVGESLDCLSQCWNCGTWDHSPEEQC
TAPSQEAIFRACCFTPGESNSSSGFRKSNGHTPRRQIYGACHECGQSGHF
MSQCPRRQAGRGAGG
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001878Znf_CCHC
IPR000504RRM_dom
IPR012677Nucleotide-bd_a/b_plait_sf
IPR036875Znf_CCHC_sf
IPR035979RBD_domain_sf