mRNA_H-paniculata_contig1675.3805.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig1675.3805.1 vs. uniprot
Match: D8LLH6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LLH6_ECTSI) HSP 1 Score: 170 bits (430), Expect = 1.020e-39 Identity = 156/502 (31.08%), Postives = 201/502 (40.04%), Query Frame = 1
Query: 1477 GPVLL-IGKPSPKEVKKLASTRLSSWARKFTEPRTYVSPAVPILEPIKDDYLSGFGRSYIEAKWGGSDGKKREGGKXXXXXXXXXNGNEQGGGDKVGREENSGGAENSPREKEGVAASFVTEPNGTQENEPAQGKKGHDEGEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATGGSSDVGRASRRHGVYVRNLSYGLCSANALRGIFSEFGRITFASMVPSKHGT-----AEVYFATAEGAAKAVAASGRSIMGRAVSVRQL-LRGTARYFVDPEDEARKAPRNA-------CANCG------ERGHTADKCRXXXXXXXXXXXXXXXEDTCPNVCCSNCLQTGHESNVCPKEKRAVRRPVXXXXXXXXXXXXXXXRTDDDGAEEGFSCIHCRDAGHTSCGPEMQLIVGESLDCLSQCWNCGTWDHSPEEQCTAPSQEAIFRACCFTPGESNSSSGFRKSNGHTPRRQIYGACHECGQSGHFMSQCP 2922
GPVL +G+P K+++K+A RLS WA KFT RTY PAVP++EPI DDYL+ FGRSY EAK + KK XXX Q G +EN GG + KEG + E N T E + A + EG + + ++HGV+V NL Y LC L +FS FGR+T + G A VYF TAE A KA+AA G I GR V +R++ L RYFV+PE +A KA A C CG E GH AD C P CS C + GH + C + ++ FSCI CRD GHT CG E L+ G C NCG H C ++ I R C + ++S+ + Y C+ CG+ GH S+CP
Sbjct: 263 GPVLFAVGQPMSKKMRKMAKGRLSKWALKFTGTRTYAPPAVPVIEPINDDYLASFGRSYAEAKSLTAQDKKENTATQDDDGDXXXXXXSQAG------DENGGGXD-----KEGPS---XXEKNSTAEKDAAGREAAKTEGSGSPTK-------------------------------------------KNSLRGGRKKHGVFVVNLLYTLCDEEKLESLFSAFGRVTAVVLTRPPEGQKVSGIASVYFDTAEEAQKALAADGMDIRGRCVGIREVRLSVDKRYFVEPE-QAAKATNKAKPLEETRCTLCGAIGHDDEEGHLADACPYVDVMEEG-----------PEPYCSVCGKAGHSIDACETACKGK-------------------------SQLKFSCITCRDDGHTQCGKETILVFGNERGHAMTCCNCGLERHD-WRSCPHQTEAEILRECGYR--FNSSAXXXXXXXXXXXXXKTYMVCYNCGKQGHGKSECP 667 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1675.3805.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 1
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig1675.3805.1 >prot_H-paniculata_contig1675.3805.1 ID=prot_H-paniculata_contig1675.3805.1|Name=mRNA_H-paniculata_contig1675.3805.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=965bp MSRLSYSESRDGMGGKEEEESAVVEGLSVDAGASEENQEGGGSSSLVQRPback to top mRNA from alignment at H-paniculata_contig1675:13644..21403+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig1675.3805.1 ID=mRNA_H-paniculata_contig1675.3805.1|Name=mRNA_H-paniculata_contig1675.3805.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=7760bp|location=Sequence derived from alignment at H-paniculata_contig1675:13644..21403+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig1675:13644..21403+ >mRNA_H-paniculata_contig1675.3805.1 ID=mRNA_H-paniculata_contig1675.3805.1|Name=mRNA_H-paniculata_contig1675.3805.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=5790bp|location=Sequence derived from alignment at H-paniculata_contig1675:13644..21403+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |