mRNA_H-paniculata_contig16702.3787.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig16702.3787.1 vs. uniprot
Match: A0A2Z6P4L8_TRISU (Uncharacterized protein n=1 Tax=Trifolium subterraneum TaxID=3900 RepID=A0A2Z6P4L8_TRISU) HSP 1 Score: 113 bits (282), Expect = 1.100e-26 Identity = 54/118 (45.76%), Postives = 71/118 (60.17%), Query Frame = 1
Query: 1 LRSDQGGEFTIEAFRQFYAENGMKQEFSATYTPQQNSVAERSRRRVFEKTRSKMITANMGRRYWVGAARATVYCLNRAPTRPHKGGTPYEKWHSTTPKLGHLRVFGCTAYVMFQSQQR 354
LR+D+GGEFT F+++ NG+K++ + YTPQQN VAER R V RS ++ N+ R++WV A Y LNR PT K TP E W+ P +GHLRVFGC AY +R
Sbjct: 558 LRTDRGGEFTSNEFKEYCKMNGIKRQLTVAYTPQQNGVAERKNRTVMNMVRSLLVEKNVPRKFWVEAVNWAFYVLNRCPTSSVKEMTPVEAWYGMKPSVGHLRVFGCIAYAHVPDARR 675
BLAST of mRNA_H-paniculata_contig16702.3787.1 vs. uniprot
Match: A0A2M4CK12_ANODA (Putative pol polyprotein (Fragment) n=1 Tax=Anopheles darlingi TaxID=43151 RepID=A0A2M4CK12_ANODA) HSP 1 Score: 112 bits (281), Expect = 1.440e-26 Identity = 50/119 (42.02%), Postives = 74/119 (62.18%), Query Frame = 1
Query: 1 LRSDQGGEFTIEAFRQFYAENGMKQEFSATYTPQQNSVAERSRRRVFEKTRSKMITANMGRRYWVGAARATVYCLNRAPTRPHKGGTPYEKWHSTTPKLGHLRVFGCTAYVMFQSQQRR 357
+RSDQGGE++ + + FY G+K +++A+Y+PQQN VAER R + E R + A + ++YW A VY N +PT+P + TPYE WH PK+ HLR+FGC A+ +R+
Sbjct: 102 IRSDQGGEYSSKNLQDFYKREGIKPQYTASYSPQQNGVAERKNRSLIEMVRCMLFDAQLEQKYWAEAMNTAVYLQNISPTKP-RNNTPYETWHGVKPKVNHLRIFGCDAWAHIPKAKRK 219
BLAST of mRNA_H-paniculata_contig16702.3787.1 vs. uniprot
Match: A0A4Y1RLQ4_PRUDU (Transposable element protein n=1 Tax=Prunus dulcis TaxID=3755 RepID=A0A4Y1RLQ4_PRUDU) HSP 1 Score: 111 bits (278), Expect = 3.530e-26 Identity = 56/119 (47.06%), Postives = 68/119 (57.14%), Query Frame = 1
Query: 1 LRSDQGGEFTIEAFRQFYAENGMKQEFSATYTPQQNSVAERSRRRVFEKTRSKMITANMGRRYWVGAARATVYCLNRAPTRPHKGGTPYEKWHSTTPKLGHLRVFGCTAYVMFQSQQRR 357
LRSDQGGEF+ F F ENG+K +F+A YTPQQN VAER R + E RS + M R+W A VY LNRA + +G TP E W P + HLR+FG AY + RR
Sbjct: 56 LRSDQGGEFSSNVFENFLKENGIKHQFTARYTPQQNGVAERKNRTIMELARSMLKAKAMPNRFWAEAVACAVYLLNRASSNSVEGKTPQEAWSGLKPCISHLRIFGSIAYSHIPDETRR 174
BLAST of mRNA_H-paniculata_contig16702.3787.1 vs. uniprot
Match: A0A5H2YBV8_PRUDU (Transposable element protein n=1 Tax=Prunus dulcis TaxID=3755 RepID=A0A5H2YBV8_PRUDU) HSP 1 Score: 111 bits (278), Expect = 3.690e-26 Identity = 56/119 (47.06%), Postives = 68/119 (57.14%), Query Frame = 1
Query: 1 LRSDQGGEFTIEAFRQFYAENGMKQEFSATYTPQQNSVAERSRRRVFEKTRSKMITANMGRRYWVGAARATVYCLNRAPTRPHKGGTPYEKWHSTTPKLGHLRVFGCTAYVMFQSQQRR 357
LRSDQGGEF+ F F ENG+K +F+A YTPQQN VAER R + E RS + M R+W A VY LNRA + +G TP E W P + HLR+FG AY + RR
Sbjct: 622 LRSDQGGEFSSNVFENFLKENGIKHQFTARYTPQQNGVAERKNRTIMELARSMLKAKAMPNRFWAEAVACAVYLLNRASSNSVEGKTPQEAWSGLKPCISHLRIFGSIAYSHIPDETRR 740
BLAST of mRNA_H-paniculata_contig16702.3787.1 vs. uniprot
Match: A0A4Y1RY62_PRUDU (NAD(P)-binding Rossmann-fold superfamily protein n=1 Tax=Prunus dulcis TaxID=3755 RepID=A0A4Y1RY62_PRUDU) HSP 1 Score: 111 bits (278), Expect = 3.700e-26 Identity = 56/119 (47.06%), Postives = 68/119 (57.14%), Query Frame = 1
Query: 1 LRSDQGGEFTIEAFRQFYAENGMKQEFSATYTPQQNSVAERSRRRVFEKTRSKMITANMGRRYWVGAARATVYCLNRAPTRPHKGGTPYEKWHSTTPKLGHLRVFGCTAYVMFQSQQRR 357
LRSDQGGEF+ F F ENG+K +F+A YTPQQN VAER R + E RS + M R+W A VY LNRA + +G TP E W P + HLR+FG AY + RR
Sbjct: 218 LRSDQGGEFSSNVFENFLKENGIKHQFTARYTPQQNGVAERKNRTIMELARSMLKAKAMPNRFWAEAVACAVYLLNRASSNSVEGKTPQEAWSGLKPCISHLRIFGSIAYSHIPDETRR 336
BLAST of mRNA_H-paniculata_contig16702.3787.1 vs. uniprot
Match: A0A2K3KY79_TRIPR (Copia-type polyprotein (Fragment) n=1 Tax=Trifolium pratense TaxID=57577 RepID=A0A2K3KY79_TRIPR) HSP 1 Score: 111 bits (278), Expect = 3.710e-26 Identity = 54/118 (45.76%), Postives = 70/118 (59.32%), Query Frame = 1
Query: 1 LRSDQGGEFTIEAFRQFYAENGMKQEFSATYTPQQNSVAERSRRRVFEKTRSKMITANMGRRYWVGAARATVYCLNRAPTRPHKGGTPYEKWHSTTPKLGHLRVFGCTAYVMFQSQQR 354
LR+D+GGEFT F+++ NG+K++ +A YTPQQN VAER R V RS ++ N+ R++W A Y LNR PT K TP E W P +GHLRVFGC AY +R
Sbjct: 254 LRTDRGGEFTSNEFKEYCKMNGIKRQLTAAYTPQQNGVAERKNRTVMNMVRSLLVEKNVPRKFWAEAVNWAFYVLNRCPTSSVKEMTPVEAWCGVKPSVGHLRVFGCIAYAHVPDARR 371
BLAST of mRNA_H-paniculata_contig16702.3787.1 vs. uniprot
Match: A0A4Y1RM74_PRUDU (Transposable element protein n=7 Tax=Prunus dulcis TaxID=3755 RepID=A0A4Y1RM74_PRUDU) HSP 1 Score: 111 bits (278), Expect = 3.770e-26 Identity = 56/119 (47.06%), Postives = 68/119 (57.14%), Query Frame = 1
Query: 1 LRSDQGGEFTIEAFRQFYAENGMKQEFSATYTPQQNSVAERSRRRVFEKTRSKMITANMGRRYWVGAARATVYCLNRAPTRPHKGGTPYEKWHSTTPKLGHLRVFGCTAYVMFQSQQRR 357
LRSDQGGEF+ F F ENG+K +F+A YTPQQN VAER R + E RS + M R+W A VY LNRA + +G TP E W P + HLR+FG AY + RR
Sbjct: 622 LRSDQGGEFSSNVFENFLKENGIKHQFTARYTPQQNGVAERKNRTIMELARSMLKAKAMPNRFWAEAVACAVYLLNRASSNSVEGKTPQEAWSGLKPCISHLRIFGSIAYSHIPDETRR 740
BLAST of mRNA_H-paniculata_contig16702.3787.1 vs. uniprot
Match: A0A2Z6MKI6_TRISU (Uncharacterized protein n=1 Tax=Trifolium subterraneum TaxID=3900 RepID=A0A2Z6MKI6_TRISU) HSP 1 Score: 108 bits (271), Expect = 3.290e-25 Identity = 48/111 (43.24%), Postives = 72/111 (64.86%), Query Frame = 1
Query: 1 LRSDQGGEFTIEAFRQFYAENGMKQEFSATYTPQQNSVAERSRRRVFEKTRSKMITANMGRRYWVGAARATVYCLNRAPTRPHKGGTPYEKWHSTTPKLGHLRVFGCTAYV 333
LR+D+GGEF +AFR+F+ +NG+K++ +ATYTPQ N +AER R + + RS + T ++ + +W A ++ LNR+P TP E W S+ P + H +VFGCTAY
Sbjct: 500 LRTDRGGEFNSDAFREFFEDNGIKRQLTATYTPQPNGIAERKNRTIMDMVRSMLATKDIPKEFWPEAVNWAIHVLNRSPAAAIPDKTPEEAWSSSKPTVKHFKVFGCTAYT 610
BLAST of mRNA_H-paniculata_contig16702.3787.1 vs. uniprot
Match: A0A1J3FIQ7_NOCCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Noccaea caerulescens TaxID=107243 RepID=A0A1J3FIQ7_NOCCA) HSP 1 Score: 106 bits (265), Expect = 3.400e-25 Identity = 50/118 (42.37%), Postives = 72/118 (61.02%), Query Frame = 1
Query: 1 LRSDQGGEFTIEAFRQFYAENGMKQEFSATYTPQQNSVAERSRRRVFEKTRSKMITANMGRRYWVGAARATVYCLNRAPTRPHKGGTPYEKWHSTTPKLGHLRVFGCTAYVMFQSQQR 354
RSD GGE+T ++F+QF ++G+ + S YTPQQN VAER R + E R+ M N+ +R+W A Y +NR PT+ + +P+E + T P L HLRVFGC +V+ +QR
Sbjct: 14 FRSDNGGEYTSQSFKQFLNKHGIVHQTSCPYTPQQNGVAERKNRHLMEVARAMMFHTNVPKRFWGDAVVTACYLINRIPTKILQDSSPFEVLNQTNPSLDHLRVFGCVCFVLVPGEQR 131
BLAST of mRNA_H-paniculata_contig16702.3787.1 vs. uniprot
Match: A0A085N6C0_9BILA (Uncharacterized protein n=1 Tax=Trichuris suis TaxID=68888 RepID=A0A085N6C0_9BILA) HSP 1 Score: 108 bits (269), Expect = 6.310e-25 Identity = 53/119 (44.54%), Postives = 66/119 (55.46%), Query Frame = 1
Query: 1 LRSDQGGEFTIEAFRQFYAENGMKQEFSATYTPQQNSVAERSRRRVFEKTRSKMITANMGRRYWVGAARATVYCLNRAPTRPHKGGTPYEKWHSTTPKLGHLRVFGCTAYVMFQSQQRR 357
LRSD G EF + F ENG+ E S YTP+ N +AER R + EK RS + T N+ + W A Y +NR P R TPYE+W P +GHLRVFGC AYV +Q R+
Sbjct: 639 LRSDCGTEFVNKTVGDFLVENGILHERSPPYTPESNGMAERENRTLVEKARSTLCTRNLPKSLWAEAVYTAAYLMNRVPNRKENTATPYERWFGKRPSVGHLRVFGCDAYVHVPAQHRK 757 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig16702.3787.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig16702.3787.1 >prot_H-paniculata_contig16702.3787.1 ID=prot_H-paniculata_contig16702.3787.1|Name=mRNA_H-paniculata_contig16702.3787.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=119bp LRSDQGGEFTIEAFRQFYAENGMKQEFSATYTPQQNSVAERSRRRVFEKTback to top mRNA from alignment at H-paniculata_contig16702:2448..2804- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig16702.3787.1 ID=mRNA_H-paniculata_contig16702.3787.1|Name=mRNA_H-paniculata_contig16702.3787.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=357bp|location=Sequence derived from alignment at H-paniculata_contig16702:2448..2804- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig16702:2448..2804- >mRNA_H-paniculata_contig16702.3787.1 ID=mRNA_H-paniculata_contig16702.3787.1|Name=mRNA_H-paniculata_contig16702.3787.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=714bp|location=Sequence derived from alignment at H-paniculata_contig16702:2448..2804- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |