mRNA_H-paniculata_contig16702.3787.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig16702.3787.1
Unique NamemRNA_H-paniculata_contig16702.3787.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig16702.3787.1 vs. uniprot
Match: A0A2Z6P4L8_TRISU (Uncharacterized protein n=1 Tax=Trifolium subterraneum TaxID=3900 RepID=A0A2Z6P4L8_TRISU)

HSP 1 Score: 113 bits (282), Expect = 1.100e-26
Identity = 54/118 (45.76%), Postives = 71/118 (60.17%), Query Frame = 1
Query:    1 LRSDQGGEFTIEAFRQFYAENGMKQEFSATYTPQQNSVAERSRRRVFEKTRSKMITANMGRRYWVGAARATVYCLNRAPTRPHKGGTPYEKWHSTTPKLGHLRVFGCTAYVMFQSQQR 354
            LR+D+GGEFT   F+++   NG+K++ +  YTPQQN VAER  R V    RS ++  N+ R++WV A     Y LNR PT   K  TP E W+   P +GHLRVFGC AY      +R
Sbjct:  558 LRTDRGGEFTSNEFKEYCKMNGIKRQLTVAYTPQQNGVAERKNRTVMNMVRSLLVEKNVPRKFWVEAVNWAFYVLNRCPTSSVKEMTPVEAWYGMKPSVGHLRVFGCIAYAHVPDARR 675          
BLAST of mRNA_H-paniculata_contig16702.3787.1 vs. uniprot
Match: A0A2M4CK12_ANODA (Putative pol polyprotein (Fragment) n=1 Tax=Anopheles darlingi TaxID=43151 RepID=A0A2M4CK12_ANODA)

HSP 1 Score: 112 bits (281), Expect = 1.440e-26
Identity = 50/119 (42.02%), Postives = 74/119 (62.18%), Query Frame = 1
Query:    1 LRSDQGGEFTIEAFRQFYAENGMKQEFSATYTPQQNSVAERSRRRVFEKTRSKMITANMGRRYWVGAARATVYCLNRAPTRPHKGGTPYEKWHSTTPKLGHLRVFGCTAYVMFQSQQRR 357
            +RSDQGGE++ +  + FY   G+K +++A+Y+PQQN VAER  R + E  R  +  A + ++YW  A    VY  N +PT+P +  TPYE WH   PK+ HLR+FGC A+      +R+
Sbjct:  102 IRSDQGGEYSSKNLQDFYKREGIKPQYTASYSPQQNGVAERKNRSLIEMVRCMLFDAQLEQKYWAEAMNTAVYLQNISPTKP-RNNTPYETWHGVKPKVNHLRIFGCDAWAHIPKAKRK 219          
BLAST of mRNA_H-paniculata_contig16702.3787.1 vs. uniprot
Match: A0A4Y1RLQ4_PRUDU (Transposable element protein n=1 Tax=Prunus dulcis TaxID=3755 RepID=A0A4Y1RLQ4_PRUDU)

HSP 1 Score: 111 bits (278), Expect = 3.530e-26
Identity = 56/119 (47.06%), Postives = 68/119 (57.14%), Query Frame = 1
Query:    1 LRSDQGGEFTIEAFRQFYAENGMKQEFSATYTPQQNSVAERSRRRVFEKTRSKMITANMGRRYWVGAARATVYCLNRAPTRPHKGGTPYEKWHSTTPKLGHLRVFGCTAYVMFQSQQRR 357
            LRSDQGGEF+   F  F  ENG+K +F+A YTPQQN VAER  R + E  RS +    M  R+W  A    VY LNRA +   +G TP E W    P + HLR+FG  AY     + RR
Sbjct:   56 LRSDQGGEFSSNVFENFLKENGIKHQFTARYTPQQNGVAERKNRTIMELARSMLKAKAMPNRFWAEAVACAVYLLNRASSNSVEGKTPQEAWSGLKPCISHLRIFGSIAYSHIPDETRR 174          
BLAST of mRNA_H-paniculata_contig16702.3787.1 vs. uniprot
Match: A0A5H2YBV8_PRUDU (Transposable element protein n=1 Tax=Prunus dulcis TaxID=3755 RepID=A0A5H2YBV8_PRUDU)

HSP 1 Score: 111 bits (278), Expect = 3.690e-26
Identity = 56/119 (47.06%), Postives = 68/119 (57.14%), Query Frame = 1
Query:    1 LRSDQGGEFTIEAFRQFYAENGMKQEFSATYTPQQNSVAERSRRRVFEKTRSKMITANMGRRYWVGAARATVYCLNRAPTRPHKGGTPYEKWHSTTPKLGHLRVFGCTAYVMFQSQQRR 357
            LRSDQGGEF+   F  F  ENG+K +F+A YTPQQN VAER  R + E  RS +    M  R+W  A    VY LNRA +   +G TP E W    P + HLR+FG  AY     + RR
Sbjct:  622 LRSDQGGEFSSNVFENFLKENGIKHQFTARYTPQQNGVAERKNRTIMELARSMLKAKAMPNRFWAEAVACAVYLLNRASSNSVEGKTPQEAWSGLKPCISHLRIFGSIAYSHIPDETRR 740          
BLAST of mRNA_H-paniculata_contig16702.3787.1 vs. uniprot
Match: A0A4Y1RY62_PRUDU (NAD(P)-binding Rossmann-fold superfamily protein n=1 Tax=Prunus dulcis TaxID=3755 RepID=A0A4Y1RY62_PRUDU)

HSP 1 Score: 111 bits (278), Expect = 3.700e-26
Identity = 56/119 (47.06%), Postives = 68/119 (57.14%), Query Frame = 1
Query:    1 LRSDQGGEFTIEAFRQFYAENGMKQEFSATYTPQQNSVAERSRRRVFEKTRSKMITANMGRRYWVGAARATVYCLNRAPTRPHKGGTPYEKWHSTTPKLGHLRVFGCTAYVMFQSQQRR 357
            LRSDQGGEF+   F  F  ENG+K +F+A YTPQQN VAER  R + E  RS +    M  R+W  A    VY LNRA +   +G TP E W    P + HLR+FG  AY     + RR
Sbjct:  218 LRSDQGGEFSSNVFENFLKENGIKHQFTARYTPQQNGVAERKNRTIMELARSMLKAKAMPNRFWAEAVACAVYLLNRASSNSVEGKTPQEAWSGLKPCISHLRIFGSIAYSHIPDETRR 336          
BLAST of mRNA_H-paniculata_contig16702.3787.1 vs. uniprot
Match: A0A2K3KY79_TRIPR (Copia-type polyprotein (Fragment) n=1 Tax=Trifolium pratense TaxID=57577 RepID=A0A2K3KY79_TRIPR)

HSP 1 Score: 111 bits (278), Expect = 3.710e-26
Identity = 54/118 (45.76%), Postives = 70/118 (59.32%), Query Frame = 1
Query:    1 LRSDQGGEFTIEAFRQFYAENGMKQEFSATYTPQQNSVAERSRRRVFEKTRSKMITANMGRRYWVGAARATVYCLNRAPTRPHKGGTPYEKWHSTTPKLGHLRVFGCTAYVMFQSQQR 354
            LR+D+GGEFT   F+++   NG+K++ +A YTPQQN VAER  R V    RS ++  N+ R++W  A     Y LNR PT   K  TP E W    P +GHLRVFGC AY      +R
Sbjct:  254 LRTDRGGEFTSNEFKEYCKMNGIKRQLTAAYTPQQNGVAERKNRTVMNMVRSLLVEKNVPRKFWAEAVNWAFYVLNRCPTSSVKEMTPVEAWCGVKPSVGHLRVFGCIAYAHVPDARR 371          
BLAST of mRNA_H-paniculata_contig16702.3787.1 vs. uniprot
Match: A0A4Y1RM74_PRUDU (Transposable element protein n=7 Tax=Prunus dulcis TaxID=3755 RepID=A0A4Y1RM74_PRUDU)

HSP 1 Score: 111 bits (278), Expect = 3.770e-26
Identity = 56/119 (47.06%), Postives = 68/119 (57.14%), Query Frame = 1
Query:    1 LRSDQGGEFTIEAFRQFYAENGMKQEFSATYTPQQNSVAERSRRRVFEKTRSKMITANMGRRYWVGAARATVYCLNRAPTRPHKGGTPYEKWHSTTPKLGHLRVFGCTAYVMFQSQQRR 357
            LRSDQGGEF+   F  F  ENG+K +F+A YTPQQN VAER  R + E  RS +    M  R+W  A    VY LNRA +   +G TP E W    P + HLR+FG  AY     + RR
Sbjct:  622 LRSDQGGEFSSNVFENFLKENGIKHQFTARYTPQQNGVAERKNRTIMELARSMLKAKAMPNRFWAEAVACAVYLLNRASSNSVEGKTPQEAWSGLKPCISHLRIFGSIAYSHIPDETRR 740          
BLAST of mRNA_H-paniculata_contig16702.3787.1 vs. uniprot
Match: A0A2Z6MKI6_TRISU (Uncharacterized protein n=1 Tax=Trifolium subterraneum TaxID=3900 RepID=A0A2Z6MKI6_TRISU)

HSP 1 Score: 108 bits (271), Expect = 3.290e-25
Identity = 48/111 (43.24%), Postives = 72/111 (64.86%), Query Frame = 1
Query:    1 LRSDQGGEFTIEAFRQFYAENGMKQEFSATYTPQQNSVAERSRRRVFEKTRSKMITANMGRRYWVGAARATVYCLNRAPTRPHKGGTPYEKWHSTTPKLGHLRVFGCTAYV 333
            LR+D+GGEF  +AFR+F+ +NG+K++ +ATYTPQ N +AER  R + +  RS + T ++ + +W  A    ++ LNR+P       TP E W S+ P + H +VFGCTAY 
Sbjct:  500 LRTDRGGEFNSDAFREFFEDNGIKRQLTATYTPQPNGIAERKNRTIMDMVRSMLATKDIPKEFWPEAVNWAIHVLNRSPAAAIPDKTPEEAWSSSKPTVKHFKVFGCTAYT 610          
BLAST of mRNA_H-paniculata_contig16702.3787.1 vs. uniprot
Match: A0A1J3FIQ7_NOCCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Noccaea caerulescens TaxID=107243 RepID=A0A1J3FIQ7_NOCCA)

HSP 1 Score: 106 bits (265), Expect = 3.400e-25
Identity = 50/118 (42.37%), Postives = 72/118 (61.02%), Query Frame = 1
Query:    1 LRSDQGGEFTIEAFRQFYAENGMKQEFSATYTPQQNSVAERSRRRVFEKTRSKMITANMGRRYWVGAARATVYCLNRAPTRPHKGGTPYEKWHSTTPKLGHLRVFGCTAYVMFQSQQR 354
             RSD GGE+T ++F+QF  ++G+  + S  YTPQQN VAER  R + E  R+ M   N+ +R+W  A     Y +NR PT+  +  +P+E  + T P L HLRVFGC  +V+   +QR
Sbjct:   14 FRSDNGGEYTSQSFKQFLNKHGIVHQTSCPYTPQQNGVAERKNRHLMEVARAMMFHTNVPKRFWGDAVVTACYLINRIPTKILQDSSPFEVLNQTNPSLDHLRVFGCVCFVLVPGEQR 131          
BLAST of mRNA_H-paniculata_contig16702.3787.1 vs. uniprot
Match: A0A085N6C0_9BILA (Uncharacterized protein n=1 Tax=Trichuris suis TaxID=68888 RepID=A0A085N6C0_9BILA)

HSP 1 Score: 108 bits (269), Expect = 6.310e-25
Identity = 53/119 (44.54%), Postives = 66/119 (55.46%), Query Frame = 1
Query:    1 LRSDQGGEFTIEAFRQFYAENGMKQEFSATYTPQQNSVAERSRRRVFEKTRSKMITANMGRRYWVGAARATVYCLNRAPTRPHKGGTPYEKWHSTTPKLGHLRVFGCTAYVMFQSQQRR 357
            LRSD G EF  +    F  ENG+  E S  YTP+ N +AER  R + EK RS + T N+ +  W  A     Y +NR P R     TPYE+W    P +GHLRVFGC AYV   +Q R+
Sbjct:  639 LRSDCGTEFVNKTVGDFLVENGILHERSPPYTPESNGMAERENRTLVEKARSTLCTRNLPKSLWAEAVYTAAYLMNRVPNRKENTATPYERWFGKRPSVGHLRVFGCDAYVHVPAQHRK 757          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig16702.3787.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2Z6P4L8_TRISU1.100e-2645.76Uncharacterized protein n=1 Tax=Trifolium subterra... [more]
A0A2M4CK12_ANODA1.440e-2642.02Putative pol polyprotein (Fragment) n=1 Tax=Anophe... [more]
A0A4Y1RLQ4_PRUDU3.530e-2647.06Transposable element protein n=1 Tax=Prunus dulcis... [more]
A0A5H2YBV8_PRUDU3.690e-2647.06Transposable element protein n=1 Tax=Prunus dulcis... [more]
A0A4Y1RY62_PRUDU3.700e-2647.06NAD(P)-binding Rossmann-fold superfamily protein n... [more]
A0A2K3KY79_TRIPR3.710e-2645.76Copia-type polyprotein (Fragment) n=1 Tax=Trifoliu... [more]
A0A4Y1RM74_PRUDU3.770e-2647.06Transposable element protein n=7 Tax=Prunus dulcis... [more]
A0A2Z6MKI6_TRISU3.290e-2543.24Uncharacterized protein n=1 Tax=Trifolium subterra... [more]
A0A1J3FIQ7_NOCCA3.400e-2542.37Retrovirus-related Pol polyprotein from transposon... [more]
A0A085N6C0_9BILA6.310e-2544.54Uncharacterized protein n=1 Tax=Trichuris suis Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig16702contigH-paniculata_contig16702:2448..2804 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score114.4
Seed ortholog evalue3.7e-23
Seed eggNOG ortholog4558.Sb07g028153.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.GAG-pre-integrase domain
EggNOG OGs37THH@33090,3GG2K@35493,3IMWS@38820,3M2QC@4447,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPoales
Best eggNOG OGNA|NA|NA
Exons1
Model size357
Cds size357
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929324.6996582-CDS-H-paniculata_contig16702:2447..28041622929324.6996582-CDS-H-paniculata_contig16702:2447..2804Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16702 2448..2804 -
1691480816.2981677-CDS-H-paniculata_contig16702:2447..28041691480816.2981677-CDS-H-paniculata_contig16702:2447..2804Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16702 2448..2804 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig16702.3787.1prot_H-paniculata_contig16702.3787.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig16702 2448..2804 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig16702.3787.1

>prot_H-paniculata_contig16702.3787.1 ID=prot_H-paniculata_contig16702.3787.1|Name=mRNA_H-paniculata_contig16702.3787.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=119bp
LRSDQGGEFTIEAFRQFYAENGMKQEFSATYTPQQNSVAERSRRRVFEKT
RSKMITANMGRRYWVGAARATVYCLNRAPTRPHKGGTPYEKWHSTTPKLG
HLRVFGCTAYVMFQSQQRR
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mRNA from alignment at H-paniculata_contig16702:2448..2804-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig16702.3787.1 ID=mRNA_H-paniculata_contig16702.3787.1|Name=mRNA_H-paniculata_contig16702.3787.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=357bp|location=Sequence derived from alignment at H-paniculata_contig16702:2448..2804- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTTCGGTCAGATCAAGGAGGAGAGTTTACAATAGAAGCGTTCCGACAATT TTATGCGGAAAATGGCATGAAGCAAGAATTTTCTGCCACCTACACGCCGC AGCAAAACAGTGTGGCGGAGCGCAGCAGGCGGAGGGTTTTCGAGAAGACT CGAAGTAAGATGATAACCGCCAACATGGGCCGCAGGTATTGGGTAGGGGC GGCGCGCGCGACTGTGTACTGCTTAAATCGCGCCCCGACCCGACCGCACA AAGGTGGGACACCGTATGAGAAATGGCACAGCACGACACCAAAGCTTGGT CACCTTCGTGTCTTCGGCTGCACGGCGTACGTGATGTTCCAGTCGCAGCA GAGACGA
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Coding sequence (CDS) from alignment at H-paniculata_contig16702:2448..2804-

>mRNA_H-paniculata_contig16702.3787.1 ID=mRNA_H-paniculata_contig16702.3787.1|Name=mRNA_H-paniculata_contig16702.3787.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=714bp|location=Sequence derived from alignment at H-paniculata_contig16702:2448..2804- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTTCGGTCAGATCAAGGAGGAGAGTTTACAATAGAAGCGTTCCGACAATT
TTATGCGGAAAATGGCATGAAGCAAGAATTTTCTGCCACCTACACGCCGC
AGCAAAACAGTGTGGCGGAGCGCAGCAGGCGGAGGGTTTTCGAGAAGACT
CGAAGTAAGATGATAACCGCCAACATGGGCCGCAGGTATTGGGTAGGGGC
GGCGCGCGCGACTGTGTACTGCTTAAATCGCGCCCCGACCCGACCGCACA
AAGGTGGGACACCGTATGAGAAATGGCACAGCACGACACCAAAGCTTGGT
CACCTTCGTGTCTTCGGCTGCACGGCGTACGTGATGTTCCAGTCGCAGCA
GAGACGACTTCGGTCAGATCAAGGAGGAGAGTTTACAATAGAAGCGTTCC
GACAATTTTATGCGGAAAATGGCATGAAGCAAGAATTTTCTGCCACCTAC
ACGCCGCAGCAAAACAGTGTGGCGGAGCGCAGCAGGCGGAGGGTTTTCGA
GAAGACTCGAAGTAAGATGATAACCGCCAACATGGGCCGCAGGTATTGGG
TAGGGGCGGCGCGCGCGACTGTGTACTGCTTAAATCGCGCCCCGACCCGA
CCGCACAAAGGTGGGACACCGTATGAGAAATGGCACAGCACGACACCAAA
GCTTGGTCACCTTCGTGTCTTCGGCTGCACGGCGTACGTGATGTTCCAGT
CGCAGCAGAGACGA
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