mRNA_H-paniculata_contig16697.3779.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig16697.3779.1
Unique NamemRNA_H-paniculata_contig16697.3779.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig16697.3779.1 vs. uniprot
Match: D7G8S9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8S9_ECTSI)

HSP 1 Score: 147 bits (371), Expect = 5.470e-42
Identity = 74/94 (78.72%), Postives = 85/94 (90.43%), Query Frame = 2
Query:   32 ASLTQSEREAMKITGFGPTSVSFVKNNGGWIFNLVMSHLLFWLFGFTALLDYGYSDLNQNSSGTIVSGPSGSGVGIITTLLVVVSTLVVIAKAV 313
            ASLTQS+REA+ + GFGPT V FVKNNGGW+FNLV +HLLFWLFGFTALL++GYSDLNQ+SSG I SGPSGSGVGIITTLL+ V TLVV+AKA+
Sbjct:    4 ASLTQSQREALIVKGFGPTMVHFVKNNGGWMFNLVFAHLLFWLFGFTALLEFGYSDLNQDSSGQIKSGPSGSGVGIITTLLMAVGTLVVVAKAI 97          
BLAST of mRNA_H-paniculata_contig16697.3779.1 vs. uniprot
Match: G4ZCN4_PHYSP (Uncharacterized protein n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4ZCN4_PHYSP)

HSP 1 Score: 76.3 bits (186), Expect = 2.020e-14
Identity = 36/78 (46.15%), Postives = 51/78 (65.38%), Query Frame = 2
Query:   92 VSFVKNNGGWIFNLVMSHLLFWLFGFTALLDYGYSDLNQNSSGTIVSGPSGSGVGIITTLLVVVSTLVVIAKAVSLFG 325
            + FV +N GW FNL+ +HLL+W+ GF   LDYGYS    ++ G + SGP GSG  ++T  + V+ T V +A+ VS FG
Sbjct:   15 IHFVTDNSGWTFNLITTHLLWWIVGFPIALDYGYSSKAYDAKGALPSGPEGSGAYVVTLFVCVLCTAVYMARLVSYFG 92          
BLAST of mRNA_H-paniculata_contig16697.3779.1 vs. uniprot
Match: W2R6Z7_PHYPN (Uncharacterized protein n=9 Tax=Phytophthora TaxID=4783 RepID=W2R6Z7_PHYPN)

HSP 1 Score: 73.2 bits (178), Expect = 3.080e-13
Identity = 36/77 (46.75%), Postives = 49/77 (63.64%), Query Frame = 2
Query:   92 VSFVKNNGGWIFNLVMSHLLFWLFGFTALLDYGYSDLNQNSSGTIVSGPSGSGVGIITTLLVVVSTLVVIAKAVSLF 322
            V FV +N GW FNL+ +HLL+W+ GF   LDYGYS    +  G + SGP GSGV I+T  +  + T V +A+ +S F
Sbjct:   16 VHFVTDNSGWTFNLITTHLLWWIVGFPIALDYGYSSDAYDGKGALPSGPEGSGVYIVTLFVCTLCTAVYLARLISYF 92          
BLAST of mRNA_H-paniculata_contig16697.3779.1 vs. uniprot
Match: A0A3F2RGG8_9STRA (Uncharacterized protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RGG8_9STRA)

HSP 1 Score: 73.2 bits (178), Expect = 3.420e-13
Identity = 33/75 (44.00%), Postives = 49/75 (65.33%), Query Frame = 2
Query:   92 VSFVKNNGGWIFNLVMSHLLFWLFGFTALLDYGYSDLNQNSSGTIVSGPSGSGVGIITTLLVVVSTLVVIAKAVS 316
            V F+K+N GW FNL+ +HLLFW+ GF   L+YGYS  + +  G + SGP GSG  ++T  +  + T V +A+ +S
Sbjct:   20 VHFIKDNSGWTFNLITTHLLFWIVGFPIGLEYGYSSQSYDKKGALPSGPEGSGAYVVTLFVCALCTAVYLARVIS 94          
BLAST of mRNA_H-paniculata_contig16697.3779.1 vs. uniprot
Match: A0A329T309_9STRA (Uncharacterized protein n=3 Tax=Phytophthora TaxID=4783 RepID=A0A329T309_9STRA)

HSP 1 Score: 72.4 bits (176), Expect = 6.040e-13
Identity = 35/77 (45.45%), Postives = 49/77 (63.64%), Query Frame = 2
Query:   92 VSFVKNNGGWIFNLVMSHLLFWLFGFTALLDYGYSDLNQNSSGTIVSGPSGSGVGIITTLLVVVSTLVVIAKAVSLF 322
            V FV +N GW FNL+ +HLL+W+ GF   LDYGYS    ++ G + SGP GSGV ++T  +  + T V  A+ +S F
Sbjct:   16 VHFVTDNSGWTFNLITTHLLWWIVGFPIALDYGYSSDAYDAKGALPSGPEGSGVYVVTLFVCTLCTAVYFARLISYF 92          
BLAST of mRNA_H-paniculata_contig16697.3779.1 vs. uniprot
Match: A0A397AWI6_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397AWI6_9STRA)

HSP 1 Score: 71.6 bits (174), Expect = 1.040e-12
Identity = 35/77 (45.45%), Postives = 54/77 (70.13%), Query Frame = 2
Query:   86 TSVSFVKNNGGWIFNLVMSHLLFWLFGFTALLDYGYSDLNQNSSGTIVSGPSGSGVGIITTLLVVVSTLVVIAKAVS 316
            T ++++++N GW FNLV+S++LFWL GF    DYGYS+++ N  G I SG  GSGV +IT +L+++  LV   + +S
Sbjct:   13 TVLAYIQDNTGWGFNLVVSNILFWLTGFPIYRDYGYSNVHYNEKGGIASGGEGSGVFVITLVLMLICYLVYFGRMIS 89          
BLAST of mRNA_H-paniculata_contig16697.3779.1 vs. uniprot
Match: A0A225X6B2_9STRA (Uncharacterized protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225X6B2_9STRA)

HSP 1 Score: 71.2 bits (173), Expect = 1.660e-12
Identity = 36/76 (47.37%), Postives = 47/76 (61.84%), Query Frame = 2
Query:   98 FVKNNGGWIFNLVMSHLLFWLFGFTALLDYGYSDLNQNSSGTIVSGPSGSGVGIITTLLVVVSTLVVIAKAVSLFG 325
            FV +N GW FNL+ +HLL+W+ GF   L YGYS  + N  G + SGP GSG  I+T  +  + T V  A+ VS FG
Sbjct:   18 FVLDNSGWTFNLITTHLLWWIVGFPIGLKYGYSSNSYNDKGGLPSGPEGSGAYIVTLFVCALCTAVYFARLVSYFG 93          
BLAST of mRNA_H-paniculata_contig16697.3779.1 vs. uniprot
Match: A0A6G0XHM4_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XHM4_9STRA)

HSP 1 Score: 70.5 bits (171), Expect = 2.440e-12
Identity = 36/77 (46.75%), Postives = 53/77 (68.83%), Query Frame = 2
Query:   86 TSVSFVKNNGGWIFNLVMSHLLFWLFGFTALLDYGYSDLNQNSSGTIVSGPSGSGVGIITTLLVVVSTLVVIAKAVS 316
            T V ++++N GW FNLV+S++LFWL GF  + DYGYS  N + +G I SG  GSGV +IT +L+V+  +V   + V+
Sbjct:    7 TVVGYIQDNVGWGFNLVVSNILFWLTGFPTVRDYGYSSENYDENGGIPSGGEGSGVFVITLVLMVICYIVYFGRMVT 83          
BLAST of mRNA_H-paniculata_contig16697.3779.1 vs. uniprot
Match: A0A485KR65_9STRA (Aste57867_10737 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KR65_9STRA)

HSP 1 Score: 70.5 bits (171), Expect = 2.510e-12
Identity = 37/82 (45.12%), Postives = 55/82 (67.07%), Query Frame = 2
Query:   68 ITGFGP--TSVSFVKNNGGWIFNLVMSHLLFWLFGFTALLDYGYSDLNQNSSGTIVSGPSGSGVGIITTLLVVVSTLVVIAK 307
            +T  GP  T + ++ +N GW FNL++S++LFWL GF  + DYGYS  N + +G I SG  GSGV +IT +L++V  LV  ++
Sbjct:    1 MTAHGPPRTVLGYILDNQGWGFNLIISNILFWLTGFPTVRDYGYSSTNYDENGGIPSGGEGSGVFVITLVLMIVCYLVYFSR 82          
BLAST of mRNA_H-paniculata_contig16697.3779.1 vs. uniprot
Match: A0A024T7R1_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024T7R1_9STRA)

HSP 1 Score: 70.1 bits (170), Expect = 3.890e-12
Identity = 37/70 (52.86%), Postives = 50/70 (71.43%), Query Frame = 2
Query:   86 TSVSFVKNNGGWIFNLVMSHLLFWLFGFTALLDYGYSDLNQNSSGTIVSGPSGSGVGIITTLLVVVSTLV 295
            T V+FV +N GW FNLV+S++LFWL GF    DYGYS+++ N  G I SG  GSGV +IT +L+++  LV
Sbjct:   12 TVVAFVLDNTGWGFNLVVSNILFWLTGFPIYRDYGYSNVHYNEKGGIPSGGEGSGVFVITLVLMLICYLV 81          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig16697.3779.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 18
Match NameE-valueIdentityDescription
D7G8S9_ECTSI5.470e-4278.72Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
G4ZCN4_PHYSP2.020e-1446.15Uncharacterized protein n=1 Tax=Phytophthora sojae... [more]
W2R6Z7_PHYPN3.080e-1346.75Uncharacterized protein n=9 Tax=Phytophthora TaxID... [more]
A0A3F2RGG8_9STRA3.420e-1344.00Uncharacterized protein n=3 Tax=Phytophthora kerno... [more]
A0A329T309_9STRA6.040e-1345.45Uncharacterized protein n=3 Tax=Phytophthora TaxID... [more]
A0A397AWI6_9STRA1.040e-1245.45Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]
A0A225X6B2_9STRA1.660e-1247.37Uncharacterized protein n=1 Tax=Phytophthora megak... [more]
A0A6G0XHM4_9STRA2.440e-1246.75Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A485KR65_9STRA2.510e-1245.12Aste57867_10737 protein n=1 Tax=Aphanomyces stella... [more]
A0A024T7R1_9STRA3.890e-1252.86Uncharacterized protein n=1 Tax=Aphanomyces invada... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig16697contigH-paniculata_contig16697:1594..2579 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score149.4
Seed ortholog evalue9.2e-34
Seed eggNOG ortholog2880.D7G8S9
Hectar predicted targeting categoryother localisation
EggNOG OGs2E1SW@1,2S92Y@2759
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-22_002860.1
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size679
Cds size318
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig16697.3779.1prot_H-paniculata_contig16697.3779.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig16697 1619..2243 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929323.7578478-UTR-H-paniculata_contig16697:1593..16181622929323.7578478-UTR-H-paniculata_contig16697:1593..1618Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig16697 1594..1618 +
1691480815.8464975-UTR-H-paniculata_contig16697:1593..16181691480815.8464975-UTR-H-paniculata_contig16697:1593..1618Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig16697 1594..1618 +
1622929323.805177-UTR-H-paniculata_contig16697:2243..25791622929323.805177-UTR-H-paniculata_contig16697:2243..2579Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig16697 2244..2579 +
1691480815.877193-UTR-H-paniculata_contig16697:2243..25791691480815.877193-UTR-H-paniculata_contig16697:2243..2579Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig16697 2244..2579 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929323.7712374-CDS-H-paniculata_contig16697:1618..17821622929323.7712374-CDS-H-paniculata_contig16697:1618..1782Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16697 1619..1782 +
1691480815.8586555-CDS-H-paniculata_contig16697:1618..17821691480815.8586555-CDS-H-paniculata_contig16697:1618..1782Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16697 1619..1782 +
1622929323.7876725-CDS-H-paniculata_contig16697:2089..22431622929323.7876725-CDS-H-paniculata_contig16697:2089..2243Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16697 2090..2243 +
1691480815.86866-CDS-H-paniculata_contig16697:2089..22431691480815.86866-CDS-H-paniculata_contig16697:2089..2243Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16697 2090..2243 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig16697.3779.1

>prot_H-paniculata_contig16697.3779.1 ID=prot_H-paniculata_contig16697.3779.1|Name=mRNA_H-paniculata_contig16697.3779.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=106bp
MEASLTQSEREAMKITGFGPTSVSFVKNNGGWIFNLVMSHLLFWLFGFTA
LLDYGYSDLNQNSSGTIVSGPSGSGVGIITTLLVVVSTLVVIAKAVSLFG
VCCEI*
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mRNA from alignment at H-paniculata_contig16697:1594..2579+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig16697.3779.1 ID=mRNA_H-paniculata_contig16697.3779.1|Name=mRNA_H-paniculata_contig16697.3779.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=986bp|location=Sequence derived from alignment at H-paniculata_contig16697:1594..2579+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGTGAGAAATTCAAAAATCAGCATCATGGAAGCGTCGCTAACGCAATCGG AGAGGGAAGCAATGAAGATCACGGGCTTCGGCCCAACATCTGTCAGCTTT GTGAAGAACAACGGAGGATGGATCTTTAACCTCGTCATGTCCCACTTGTT GTTCTGGCTCTTTGGCTTCACGGCACTCCTCGACTACGGGTGAGTCGTCG GGTTTTTGTATTTTTTTGCCGGCAGAGTGGTCGTGATGATGATGTTATCG CCGTTGCGAACCAATTTTTCTGATCTGTTAAACATGATTTGACTGAAGTT AGCTGCCGACCCTTCAGGACGGGTAGAAGAAAAACATGTTTTTTTATGAA CGTTAGAGAGCTTGGTTCCTCCACTAACTGTGGTAAGTGGGGTTGATTCT TAGATGAGAATTCCGGTTAGTGAAAGGTGGCCCCCTGTTCCCCGCTGCAT GCCTTCCGTTTTTATGACCCCCGTGCACGTGCGACAATACAAACAGTTAC TCGGATCTTAACCAAAACTCTAGCGGAACTATCGTGTCGGGGCCCTCAGG ATCTGGAGTAGGCATCATAACCACGCTGCTCGTGGTGGTGTCAACACTCG TGGTGATTGCCAAGGCGGTGAGTTTGTTTGGTGTGTGTTGTGAAATCTAG TACCGGCAGGTGATCGTTGTAGATGGAAGCGTCCACATTTATTTTTTTTG CACAATTTTTGGTAACAAATTGATCGACAGTAGTCATGATGCATAGTGTT TCATGTCTGGTCCTGCACTGGAATCGAGCTGCGGCGAAGGGGAAGGTGAT TTGAACAGTATGGTCATCCATTCTGAGTCGTGTATTGTGCACCCCTTTGA GATTCGTGAGTGAATGTCATTGAAAATGGCTTGAGGTTCGATTCAAGGCA TTTTTTTAGCCAATCTGCGGATCGGCACCTGTTGAACGGTCCACGCGCTC TACCGTAGCCCTACCCACTGTTTGCAATGTTGGCCC
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Coding sequence (CDS) from alignment at H-paniculata_contig16697:1594..2579+

>mRNA_H-paniculata_contig16697.3779.1 ID=mRNA_H-paniculata_contig16697.3779.1|Name=mRNA_H-paniculata_contig16697.3779.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=636bp|location=Sequence derived from alignment at H-paniculata_contig16697:1594..2579+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGAAGCGTCGCTAACGCAATCGGAGAGGGAAGCAATGAAGATCACGGG
CTTCGGCCCAACATCTGTCAGCTTTGTGAAGAACAACGGAGGATGGATCT
TTAACCTCGTCATGTCCCACTTGTTGTTCTGGCTCTTTGGCTTCACGGCA
CTCCTCGACTACGGATGGAAGCGTCGCTAACGCAATCGGAGAGGGAAGCA
ATGAAGATCACGGGCTTCGGCCCAACATCTGTCAGCTTTGTGAAGAACAA
CGGAGGATGGATCTTTAACCTCGTCATGTCCCACTTGTTGTTCTGGCTCT
TTGGCTTCACGGCACTCCTCGACTACGGTTACTCGGATCTTAACCAAAAC
TCTAGCGGAACTATCGTGTCGGGGCCCTCAGGATCTGGAGTAGGCATCAT
AACCACGCTGCTCGTGGTGGTGTCAACACTCGTGGTGATTGCCAAGGCGG
TGAGTTTGTTTGGTGTGTGTTGTGAAATCTAGTTACTCGGATCTTAACCA
AAACTCTAGCGGAACTATCGTGTCGGGGCCCTCAGGATCTGGAGTAGGCA
TCATAACCACGCTGCTCGTGGTGGTGTCAACACTCGTGGTGATTGCCAAG
GCGGTGAGTTTGTTTGGTGTGTGTTGTGAAATCTAG
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