mRNA_H-paniculata_contig16679.3772.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig16679.3772.1
Unique NamemRNA_H-paniculata_contig16679.3772.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig16679.3772.1 vs. uniprot
Match: D8LSH0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSH0_ECTSI)

HSP 1 Score: 343 bits (880), Expect = 1.650e-116
Identity = 166/202 (82.18%), Postives = 179/202 (88.61%), Query Frame = 1
Query:    1 FPQAFVLKQHLAAYMWWGVTINIFAMVLVSVTNFVEPEDAQPNGANNPTLGAFFILMSCA--GSQYIFEEKVMAVDNAPPLIVIGMEGLWGTIIMFIVLPIAAMLPGRDLGSVENTWDSFYMVGASQGIQIMLAVFFVTITTYNIFCIYVTAYLSAIWHAILDNFRPLSVWGTDLAIYYFITKGSFGEAWTKYSWLQFSGMM 600
            F +AFVL Q LAAYMWWGV INI AMVLVSVTNF+ PEDAQP+GANNP LGAFFIL+SC   GSQYIFEEKVMAVDNAPPL+VIGMEGLWGT+IM ++ PIAA LPGRDLGS+ENT DSFYMV  S  IQ+ML +FFVTITTYNIFCIYVTAYLSAIWHAILDNFRP+SVW TDL IYY IT GSFGEAWT+YSWLQFSGMM
Sbjct:  134 FLKAFVLNQRLAAYMWWGVAINIVAMVLVSVTNFIAPEDAQPDGANNPALGAFFILLSCIVQGSQYIFEEKVMAVDNAPPLVVIGMEGLWGTLIMLVIFPIAAALPGRDLGSIENTQDSFYMVSQSNTIQLMLLIFFVTITTYNIFCIYVTAYLSAIWHAILDNFRPVSVWSTDLVIYYMITNGSFGEAWTQYSWLQFSGMM 335          
BLAST of mRNA_H-paniculata_contig16679.3772.1 vs. uniprot
Match: A0A836CAF8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAF8_9STRA)

HSP 1 Score: 305 bits (781), Expect = 4.690e-100
Identity = 148/202 (73.27%), Postives = 167/202 (82.67%), Query Frame = 1
Query:    1 FPQAFVLKQHLAAYMWWGVTINIFAMVLVSVTNFVEPEDAQPNGANNPTLGAFFILMSCA--GSQYIFEEKVMAVDNAPPLIVIGMEGLWGTIIMFIVLPIAAMLPGRDLGSVENTWDSFYMVGASQGIQIMLAVFFVTITTYNIFCIYVTAYLSAIWHAILDNFRPLSVWGTDLAIYYFITKGSFGEAWTKYSWLQFSGMM 600
            F +AFVLK  LA YMW GV INI AMVLVS+TNF+ PEDAQP+GANNP LG FFIL+SC   GSQYIFEEKVMAVD+APPL+VIGMEGLWG++IM  + PI    PG D GS+ENTWDS  MV  S  IQ +LA+FFVT+T YNIFCIYVTAYLSAIWHAILDNFRP+SVWGTDLAI+Y  T G+FGEAWT+YSWLQ  GM+
Sbjct:  134 FLKAFVLKDRLAGYMWVGVAINIVAMVLVSLTNFIAPEDAQPDGANNPALGVFFILLSCVVQGSQYIFEEKVMAVDDAPPLVVIGMEGLWGSVIMLALFPILYYTPGADKGSIENTWDSIDMVRNSAPIQTLLAIFFVTVTMYNIFCIYVTAYLSAIWHAILDNFRPVSVWGTDLAIFYIFTAGAFGEAWTRYSWLQAVGML 335          
BLAST of mRNA_H-paniculata_contig16679.3772.1 vs. uniprot
Match: A0A6H5KUQ5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUQ5_9PHAE)

HSP 1 Score: 262 bits (669), Expect = 6.540e-84
Identity = 126/153 (82.35%), Postives = 137/153 (89.54%), Query Frame = 1
Query:    1 FPQAFVLKQHLAAYMWWGVTINIFAMVLVSVTNFVEPEDAQPNGANNPTLGAFFILMSCAGSQYIFEEKVMAVDNAPPLIVIGMEGLWGTIIMFIVLPIAAMLPGRDLGSVENTWDSFYMVGASQGIQIMLAVFFVTITTYNIFCIYVTAYLS 459
            F +AFVLKQ LAAYMWWGV INI AMVLVSVTNF+ PEDAQP+GANNP LGAFFIL+SC GSQYIFEEKVMAVDNAPPL+VIGMEGLWGT+IM ++ PIAA LPGRDLGS+ENT DSFYMV  S  IQ+ML +FFVTITTYNIFCIYVTAYLS
Sbjct:  134 FLKAFVLKQRLAAYMWWGVAINIVAMVLVSVTNFIAPEDAQPDGANNPALGAFFILLSCIGSQYIFEEKVMAVDNAPPLVVIGMEGLWGTLIMLVIFPIAAALPGRDLGSIENTQDSFYMVSQSNAIQLMLLIFFVTITTYNIFCIYVTAYLS 286          
BLAST of mRNA_H-paniculata_contig16679.3772.1 vs. uniprot
Match: K8YYA0_NANGC (Drug metabolite transporter superfamily n=2 Tax=Monodopsidaceae TaxID=425072 RepID=K8YYA0_NANGC)

HSP 1 Score: 232 bits (591), Expect = 5.060e-72
Identity = 116/204 (56.86%), Postives = 151/204 (74.02%), Query Frame = 1
Query:    1 FPQAFVLKQHLAAYMWWGVTINIFAMVLVSVTNFVEPEDAQPNGANNPTLGAFFILMSCA--GSQYIFEEKVMAVDNAPPLIVIGMEGLWGTIIMFIVL-PIAAMLPGRDLG-SVENTWDSFYMVGASQGIQIMLAVFFVTITTYNIFCIYVTAYLSAIWHAILDNFRPLSVWGTDLAIYYFITKGSFGEAWTKYSWLQFSGMM 600
            F +AFVLK HLA +MW GV+IN+ AMVLV+ T F + ++   N   +P +G  FIL+SC   G+QY+FEEKVM V++ PP++++G+EG WG I+M +V+ P A  LPG D G S+EN +DS  MV  S  +Q +L +FF+T+  YNIF IYVT +LS++WHAILDNFRP+SVWGTDL IYY  T G FGEAWT YSWLQF GM+
Sbjct:  110 FAKAFVLKDHLAPHMWLGVSINLVAMVLVASTTFFDHKNTVDN--RDPRVGIGFILLSCLVQGTQYVFEEKVMTVESLPPMVLVGLEGFWGMILMLLVVFPSAYYLPGTDEGGSMENVFDSLAMVRNSAPLQAVLLIFFLTVACYNIFAIYVTHFLSSVWHAILDNFRPISVWGTDLLIYYVFTYGRFGEAWTVYSWLQFGGML 311          
BLAST of mRNA_H-paniculata_contig16679.3772.1 vs. uniprot
Match: W7UAT2_9STRA (Drug metabolite transporter superfamily n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7UAT2_9STRA)

HSP 1 Score: 230 bits (586), Expect = 4.720e-70
Identity = 115/202 (56.93%), Postives = 150/202 (74.26%), Query Frame = 1
Query:    7 QAFVLKQHLAAYMWWGVTINIFAMVLVSVTNFVEPEDAQPNGANNPTLGAFFILMSCA--GSQYIFEEKVMAVDNAPPLIVIGMEGLWGTIIMFIVL-PIAAMLPGRDLG-SVENTWDSFYMVGASQGIQIMLAVFFVTITTYNIFCIYVTAYLSAIWHAILDNFRPLSVWGTDLAIYYFITKGSFGEAWTKYSWLQFSGMM 600
            +AFVLK HLA +MW GV+IN+ AMVLV+ T F + ++   N   +P +G  FIL+SC   G+QY+FEEKVM V++ PP++++G+EG WG I+M +V+ P A  LPG D G S+EN +DS  MV  S  +Q +L +FF+T+  YNIF IYVT +LS++WHAILDNFRP+SVWGTDL IYY  T G FGEAWT YSWLQF GM+
Sbjct:   87 KAFVLKDHLAPHMWLGVSINLVAMVLVASTTFFDHKNTVDN--RDPRVGIGFILLSCLVQGTQYVFEEKVMTVESLPPMVLVGLEGFWGMILMLLVVFPSAYYLPGTDEGGSMENVFDSLAMVRNSAPLQAVLLIFFLTVACYNIFAIYVTHFLSSVWHAILDNFRPISVWGTDLLIYYVFTYGRFGEAWTVYSWLQFGGML 286          
BLAST of mRNA_H-paniculata_contig16679.3772.1 vs. uniprot
Match: T0Q499_SAPDV (Uncharacterized protein n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0Q499_SAPDV)

HSP 1 Score: 208 bits (529), Expect = 4.960e-62
Identity = 104/200 (52.00%), Postives = 134/200 (67.00%), Query Frame = 1
Query:   16 VLKQHLAAYMWWGVTINIFAMVLVSVTNFVEPEDAQPNGANNPTLGAFFILMSC--AGSQYIFEEKVMA--VDNAPPLIVIGMEGLWGTIIM-FIVLPIAAMLPGRDLGSVENTWDSFYMVGASQGIQIMLAVFFVTITTYNIFCIYVTAYLSAIWHAILDNFRPLSVWGTDLAIYYFITKGSFGEAWTKYSWLQFSGMM 600
            VLK HL  YMW G+ +N  A ++V  T+F + +D Q N  NNP LG   I++SC    +QY+FEEK+M   +D APPLIV+GMEG WG +    IV PIA  LPG DLGS E   D+  M+G SQ  QI   +F   I  YN+F ++VT  L +IWHAILDNFRP++VWGTDL ++Y  T G+FGEAWT +SWL+  GM+
Sbjct:  143 VLKDHLRGYMWIGIAMNTAAAIMVGFTSFQDTDD-QLNSTNNPGLGILMIVLSCFVQSAQYVFEEKLMGDGIDTAPPLIVVGMEGFWGLLFTSVIVYPIAYYLPGNDLGSYERFDDALTMLGNSQAAQIAAGIFVFVILGYNVFAVFVTFLLDSIWHAILDNFRPITVWGTDLLLFYVFTPGTFGEAWTIWSWLELGGML 341          
BLAST of mRNA_H-paniculata_contig16679.3772.1 vs. uniprot
Match: A0A8K1C3U3_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C3U3_PYTOL)

HSP 1 Score: 202 bits (513), Expect = 8.020e-60
Identity = 100/200 (50.00%), Postives = 140/200 (70.00%), Query Frame = 1
Query:   16 VLKQHLAAYMWWGVTINIFAMVLVSVTNFVEPEDAQPNGAN-NPTLGAFFILMSCA--GSQYIFEEKVMAV-DNAPPLIVIGMEGLWGTIIM-FIVLPIAAMLPGRDLGSVENTWDSFYMVGASQGIQIMLAVFFVTITTYNIFCIYVTAYLSAIWHAILDNFRPLSVWGTDLAIYYFITKGSFGEAWTKYSWLQFSGMM 600
            +LK  L  YMW G+ +N  A +LV  T+F + +D   N  N +P  G   I++SCA    QY++EEK+M   D+APPL+V+GMEG+WG ++  F+V PIA ++PG DLGS E   D+F M+  SQ  QI++ V+ + I  YN+F + VT  L++IWHAILDNFRP++VWGTDL ++Y  TKG+FGEAWT +SWLQ +GM+
Sbjct:  132 ILKDRLRGYMWIGIGLNTLAALLVGATSFADQDDQSNNNQNAHPGFGILMIILSCAVQAFQYVYEEKLMDEGDSAPPLVVVGMEGVWGLVLTTFVVYPIAYLVPGNDLGSNERFDDAFEMLLNSQLAQIIVGVYLLVILGYNVFAVSVTYLLNSIWHAILDNFRPITVWGTDLLLFYVFTKGAFGEAWTIWSWLQLAGMV 331          
BLAST of mRNA_H-paniculata_contig16679.3772.1 vs. uniprot
Match: A0A067CV30_SAPPC (Uncharacterized protein n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067CV30_SAPPC)

HSP 1 Score: 206 bits (524), Expect = 6.850e-59
Identity = 103/200 (51.50%), Postives = 134/200 (67.00%), Query Frame = 1
Query:   16 VLKQHLAAYMWWGVTINIFAMVLVSVTNFVEPEDAQPNGANNPTLGAFFILMSC--AGSQYIFEEKVMA--VDNAPPLIVIGMEGLWGTIIMFI-VLPIAAMLPGRDLGSVENTWDSFYMVGASQGIQIMLAVFFVTITTYNIFCIYVTAYLSAIWHAILDNFRPLSVWGTDLAIYYFITKGSFGEAWTKYSWLQFSGMM 600
            VLK HL  YMW G+ +N  A ++V  T+F + +D Q N  NNP LG   I++SC    +QY+FEEK+M   +D APPLIV+GMEG WG +   I V PIA  LPG DLGS E   D+  M+G S+  QI   +F   I  YN+F ++VT  L +IWHAILDNFRP++VWGTDL ++Y  T G+FGEAWT +SWL+  GM+
Sbjct:  455 VLKDHLRGYMWIGIAMNTAAAIMVGFTSFQDTDD-QLNSTNNPGLGILMIVLSCFVQSAQYVFEEKLMGDGIDTAPPLIVVGMEGFWGLLFTSIFVYPIAYYLPGNDLGSYERFDDALTMLGHSKAAQIAAGIFVFVILGYNVFAVFVTFLLDSIWHAILDNFRPITVWGTDLLLFYVFTPGTFGEAWTIWSWLELGGML 653          
BLAST of mRNA_H-paniculata_contig16679.3772.1 vs. uniprot
Match: A0A7S2UXM1_9STRA (Hypothetical protein n=2 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UXM1_9STRA)

HSP 1 Score: 194 bits (493), Expect = 1.400e-58
Identity = 101/196 (51.53%), Postives = 134/196 (68.37%), Query Frame = 1
Query:   25 QHLAAYMWWGVTINIFAMVLVSVTNFVEPEDAQPNGANNPTLGAFFILMSCA--GSQYIFEEKVMAVDNAPPLIVIGMEGLWGTII-MFIVLPIAAMLPGRDLG-SVENTWDSFYMVGASQGIQIMLAVFFVTITTYNIFCIYVTAYLSAIWHAILDNFRPLSVWGTDLAIYYFITKGSFGEAWTKYSWLQFSGMM 600
            + LA YMW GV +N  AM LV  T+F+E E       ++P LG F I++S    G+QY+FEEKVMA DN PPL+VIGMEG WG ++  FI  P+A +LPG D G S E+ +D++ M      I++++ +FFV+IT YN+  IYVT  LS+IWHAILDNFRP+SVW   L IYY  + G+ GEAW  YS+LQ +GM+
Sbjct:    1 ERLAGYMWAGVVVNTIAMALVGSTSFMEDESGGGVLGSDPKLGFFLIMLSVVVQGAQYVFEEKVMANDNCPPLMVIGMEGFWGVLLTFFIAFPVAYILPGNDYGGSFESAYDAWVMWMNDGKIRLLVCLFFVSITGYNVMSIYVTKLLSSIWHAILDNFRPVSVWMFGLLIYYSWSDGTMGEAWGTYSFLQLAGML 196          
BLAST of mRNA_H-paniculata_contig16679.3772.1 vs. uniprot
Match: A0A6G0XVI4_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XVI4_9STRA)

HSP 1 Score: 197 bits (502), Expect = 4.740e-58
Identity = 99/200 (49.50%), Postives = 138/200 (69.00%), Query Frame = 1
Query:   16 VLKQHLAAYMWWGVTINIFAMVLVSVTNFVEPEDAQPNGANNPTLGAFFILMSC--AGSQYIFEEKVMA--VDNAPPLIVIGMEGLWGTIIM-FIVLPIAAMLPGRDLGSVENTWDSFYMVGASQGIQIMLAVFFVTITTYNIFCIYVTAYLSAIWHAILDNFRPLSVWGTDLAIYYFITKGSFGEAWTKYSWLQFSGMM 600
            VL  HL  YMW G+ +N  A ++V  ++F + E+ Q N  +NP LG   I++SC    +QY+FEEK+M   +D APPLIV+GMEGLWG I+   IV PIA  +PG DLGS E   D++YM+  S   Q+  A+F + I  YN+F ++VT  L++IWHAILDNFRP++VWGTDL ++Y  T  +FGEAWT +S+L+ +GM+
Sbjct:  143 VLGDHLKRYMWIGIGMNTVAALMVGFSSFQDTEE-QINNNDNPGLGIIMIILSCFVQSAQYVFEEKLMGDGIDTAPPLIVVGMEGLWGLIMTGLIVYPIAYFVPGNDLGSYERIDDAWYMLTNSPTAQVAAAIFLIVILGYNVFAVFVTFLLNSIWHAILDNFRPVTVWGTDLLLFYVFTPRTFGEAWTSWSYLELTGMI 341          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig16679.3772.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LSH0_ECTSI1.650e-11682.18Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A836CAF8_9STRA4.690e-10073.27Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A6H5KUQ5_9PHAE6.540e-8482.35Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
K8YYA0_NANGC5.060e-7256.86Drug metabolite transporter superfamily n=2 Tax=Mo... [more]
W7UAT2_9STRA4.720e-7056.93Drug metabolite transporter superfamily n=1 Tax=Na... [more]
T0Q499_SAPDV4.960e-6252.00Uncharacterized protein n=1 Tax=Saprolegnia diclin... [more]
A0A8K1C3U3_PYTOL8.020e-6050.00Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A067CV30_SAPPC6.850e-5951.50Uncharacterized protein n=1 Tax=Saprolegnia parasi... [more]
A0A7S2UXM1_9STRA1.400e-5851.53Hypothetical protein n=2 Tax=Fibrocapsa japonica T... [more]
A0A6G0XVI4_9STRA4.740e-5849.50Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig16679contigH-paniculata_contig16679:1337..5517 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score342.0
Seed ortholog evalue1.8e-91
Seed eggNOG ortholog2880.D8LSH0
Hectar predicted targeting categorysignal peptide
EggNOG free text desc.negative regulation of mitochondrial outer membrane permeabilization involved in apoptotic signaling pathway
EggNOG OGsCOG0697@1,KOG3912@2759
COG Functional cat.EG
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons4
Model size600
Cds size600
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig16679.3772.1prot_H-paniculata_contig16679.3772.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig16679 1337..5517 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929322.5496688-CDS-H-paniculata_contig16679:1336..14781622929322.5496688-CDS-H-paniculata_contig16679:1336..1478Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16679 1337..1478 -
1691480815.3701496-CDS-H-paniculata_contig16679:1336..14781691480815.3701496-CDS-H-paniculata_contig16679:1336..1478Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16679 1337..1478 -
1622929322.561068-CDS-H-paniculata_contig16679:2990..30641622929322.561068-CDS-H-paniculata_contig16679:2990..3064Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16679 2991..3064 -
1691480815.3792791-CDS-H-paniculata_contig16679:2990..30641691480815.3792791-CDS-H-paniculata_contig16679:2990..3064Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16679 2991..3064 -
1622929322.5737514-CDS-H-paniculata_contig16679:3694..38981622929322.5737514-CDS-H-paniculata_contig16679:3694..3898Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16679 3695..3898 -
1691480815.3877141-CDS-H-paniculata_contig16679:3694..38981691480815.3877141-CDS-H-paniculata_contig16679:3694..3898Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16679 3695..3898 -
1622929322.5869143-CDS-H-paniculata_contig16679:5337..55171622929322.5869143-CDS-H-paniculata_contig16679:5337..5517Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16679 5338..5517 -
1691480815.3964396-CDS-H-paniculata_contig16679:5337..55171691480815.3964396-CDS-H-paniculata_contig16679:5337..5517Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16679 5338..5517 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig16679.3772.1

>prot_H-paniculata_contig16679.3772.1 ID=prot_H-paniculata_contig16679.3772.1|Name=mRNA_H-paniculata_contig16679.3772.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=200bp
FPQAFVLKQHLAAYMWWGVTINIFAMVLVSVTNFVEPEDAQPNGANNPTL
GAFFILMSCAGSQYIFEEKVMAVDNAPPLIVIGMEGLWGTIIMFIVLPIA
AMLPGRDLGSVENTWDSFYMVGASQGIQIMLAVFFVTITTYNIFCIYVTA
YLSAIWHAILDNFRPLSVWGTDLAIYYFITKGSFGEAWTKYSWLQFSGMM
back to top

mRNA from alignment at H-paniculata_contig16679:1337..5517-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig16679.3772.1 ID=mRNA_H-paniculata_contig16679.3772.1|Name=mRNA_H-paniculata_contig16679.3772.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4181bp|location=Sequence derived from alignment at H-paniculata_contig16679:1337..5517- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTTCCTCAGGCGTTCGTGTTGAAACAGCATTTGGCGGCGTACATGTGGTG GGGGGTAACAATCAACATCTTCGCCATGGTGTTGGTTTCTGTTACAAACT TCGTCGAACCCGAGGACGCGCAGCCCAATGGGGCGAATAATCCGACGTTG GGAGCCTTCTTCATTCTTATGAGCTGCGCCGTGCAGGCAAGGAACGACGC GCGGCCCAATGCAGCAATGTGTGCGTGTGTATAGGCGACACCATTATACT GGGCAAGAATTTTCGCGTCGCGTCTTGGATTGATTGGCAAGAAAATTGCG TCTTGATTCACTTGGCAAACAAAATGGCGTCTTGATTGACCGTTGATTCA GGAACCGGACCGATGATCGACGACTAAATCATAGTTTTGGCTGTAAACGG CTTAACGACCGAGTCGTGAATAATTACGAGTATGTCACTGACGATCAGTC TGTCGTCTGCAGAAAGCCTTGACCAGCTCTAGATGAGCCTATTGTTTTGG TCGACTTCGCTTGTTTGCTGTCGAAATTTGCACGATACGTACGTAATAGC ACTTGTTACGCGCGCAGTCATATCCACACCACGTTCGGGGTTTTTTACCG CCGTTACGGTCATACAGTAGGGGTCCGATGACAAGAAACTCTTACTTCGG CTAAGGCCCAAAACCTTACTATGGCGAGAAAATCACAAACATAAGTGTTT CCCATTTTTATGTAGGAATTAGTATGAGGTCATCATTTGAGCCCCATTTC TTCAAGCGGATTTCTTATATTTTAGTGGAGCCTCAAATTCTTGTTGCGTG ATTTCTTGTCAGCGGGCCCGAAGTGTTTGCTGCCCTCTCCGCAACAACCA AGATACCTCTTCTCCGATACCCACTCCCGAATCGCCAAAACACGTACCGA ATGATGTACCAGTACGTATCTTCTCTCATGTCTTGAAAGAAAGCACGTTC TTGACGTTCCGGGGGTTCCGGGGGTTGCTGAACCCCGGTCCCTGTCCACT CATTCTGAAACTCAGGCGAGTACTGTCATTTTTTTGTTCGAGGGGTGTAA TGTTGCCGATAGTAATGTGAAGCCTTGATATCGCGTGGGGTTGCATATCC TACCTCAGCAAGAGTACAAACAGTACTACATGTTAGTACTGTAGGTGGCC ATAAGTAGGAAAGCGGTTGAAAGAAAGGAGGCTTTTTCTCTTTGGTCAAA CGCTCATTTCTACGTCATGCCCCCCCCACCCCACCCTGATGGCCAAATTT TGCTGAGAAGTGTCATTACACAACTGAAGTTTGAAGCCAGCTACATAACC CCCCCTCCTCCTCCCTCTCCTCCTCCCTCTTCTTCTCCTCTTCCTCCTCC TCCTTAAGTGTATTCATTTTGTAGATAATGACCAAGTAATCCAGCAGCTT GAAGACGAGGCTGAGGCTGAGGCTGAGGCTGAGCATACTTTCGTTTTGTT TTACGGTTATTGTCGTGTTTTCTGGAGTAATTAATGCGTATCTACTTTTG TTTTCGATCTGCTCTTTATTCTACGGTACTATTCCAAACCGCATTCTCAA GAGTGTAGACGACGCCCCCCTGGTACCCCCCCCCTCCCTCTCCCCTCCCT CCCCCCGCCAAAAAAATAGGGTAGCCAGTACATCTTCGAAGAGAAGGTGA TGGCCGTGGACAACGCCCCTCCTCTGATCGTGATCGGAATGGAGGGACTG TGGGGAACCATCATCATGTTCATTGTGCTTCCCATTGCGGCAATGCTGCC TGGCCGAGACCTGGGCTCGGTGGAGAACACGTGGGACTCTTTCTACATGG TTGGGGCCAGTCAAGGAATTCAGGTGTGGCAACGAAGTATTGTCTATCCA CGTCGTTGTTAGGTATCTAACTTCGCATGGTCCTTTAAAAATAGATAAAA TGTTTCCCTCAAATATGTTGACCGAAGGAAGTGTACGACCGAGCAGTATG TTGACCGAACGAAAGCTTTTTGCCCTGCCCCGCCCCCCTGCCCCGCCCCC CGCCCCCCCCGCACGCGTCTCAGGGAAGAAGGCAGGCTGTGGAAAATAAC CAAGCCGATCATGCGTCTTCCCGATTTGATGTTCCCCCGTTCATCCCCCT TTTTGAGTCACATTTGGCAATATATACATGAGCGATTGGTCACCGGAAAT CGCTCTGATAGGAACAACGCTCCGCCCTCGCAATGACTACATGGGTGGTC AATGGTCTAACGACGACGGCATGCAATATATTACTACGTCCCCTCCGTTC TTGATTAAATTTTGCTCTTCAGTATATACAGATAAATATTGAAGTCAGCT GCATAACCTACCTCAACATGGGTACAATGGAATTACAACATGACATTCAG AGTTAGAGTCCAACTGACTGCCGCACGCCCCCCCCCCCTTCCCTCGCTCC CTCCCTCCCTCTCTCCCTCCCTCCCTCCCCCTCCCTCCCGCCCCGGCAAT CAGATAATGCTGGCCGTGTTTTTCGTGACCATAACGACGTACAACATCTT CTGCATCTATGTTACAGCCTACCTCAGGTGATTGTTCAACGCCCGCAGCC TTTTTTGTTTTTGGTCTCCCACGTGATGATGTTTCGTTAGGTTTCCCCCT TTTTTCTTTTCTCCCCTGACTGATCTAATTTTGCTGGCAAGTGTGTACAG TTGAAGTTGGATATGAGCTGCATATCCTTAACATGGCTACTATGTGTTTG TTGTGGTGCTTCCGGATACTGTCTATGGTATCTGGTGTGGCAGTACATAC TTAAGATAGAATAATGGGAAGTGGGCTGACCTAGGACCCCTCCCCCCCCC CCTCCATCGCGCTTTTTTCTTGGAGAACCAACCTTTGCGCGGGGTTTGTC TCCTGCTGCTGTCGGGGGTTAATATACGAATATTAGTACGTTCATTCGAA GTTTCGCCGGGTCGATGTCATGTTGTGCCGATCGGTACGTACGAAAGGGG AAGTTAGGGCACCGACAGTACCTACCCCAGGTATGTGTAGCTGCGTATAC CACTTTGTACGACTCTCCGCGGCCAGATGGTTTGGCGTTGTGCGAGACAA ATTTTAAAGAGCAAAGGCGGCGCATCCACGGAATGAGGCGTAACGAAGAC GTACGTACACATCATTTTTATTTTTTTTATTTTTTCGGATATTGTACCTT GCTGTTGTATCTTTGGTGTACATGGCAGGCCCGTTGTTCATACGCCCCCA TAGTGACCCACCAAAGAGCGCGCGGCAGTACGAACCCTTGTCTCTCACAC GACCCTCTTAGATATTTTTGTTTGGCGAAGTTGCTGTAGAATACGTGCTG CGAGGAACTATTGGAGGATGCTTTAGGGGGTTTTCATTGTTGAAAATATA TATTTTTCTCTGGCCTCGGCTTTTGACTCCGGCTCGCTTACAAGCAAGGG GGTATTGAAACATGCTTGCCTATAGATATGAAACATGTTAGTCTTACAAA CAAGGGGGTGTTGAAACATGCTTGCCTACAGATATGGAACATGTTGAGGG GAAACCCCCCCAAAAAACATCAATCTTTATTCAAGGTATGCCCCGTCATT TTGATAATGTTGGATGATGACTAACTATTTCCGCGAACAAACCAAAGTGA CGGAAAATACCTCTTATTGGTTGAATTTTTCTGATAATTGTACCTACTCC AGTGCATATTAAAAGCCAGCTGTATAACGTCAACATAGGTACAATATATG TAGTTGTAATATGAGGGTCAGAGCTATAGTTTCAAACTGACTGTAGAAGC TGTTTTCCATTTTCAGGGTATCAGTCGTTCATATGAGGACCTAAGGTGCA CAAGCGAGTGATACCGTGATACTCCTTTGTGAAGATTGCTCTATAATAGT TCATGTCGCGTGTTGTCGAAGAGGCGCGAGGAGTTCCGGTACTTGGTCGT GATGGTATGTCAGAGTTTAGGCCAGGTGAACAGACTTCCTGTTGATCTAC CAAGCTGCAAATCTAAACATTCTTCAAGTCTACCCCCCCCCCCGCCCCCT TCTTCTCTTTCTTGTTTTTGGTAAAACGGAAATTACCAGCGCAATCTGGC ACGCGATCCTCGACAACTTCCGCCCCTTGAGCGTGTGGGGCACGGACTTG GCTATCTACTATTTCATCACCAAGGGCTCGTTCGGCGAGGCATGGACGAA ATACAGCTGGCTACAATTTTCGGGCATGATG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig16679:1337..5517-

>mRNA_H-paniculata_contig16679.3772.1 ID=mRNA_H-paniculata_contig16679.3772.1|Name=mRNA_H-paniculata_contig16679.3772.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1200bp|location=Sequence derived from alignment at H-paniculata_contig16679:1337..5517- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTTCCTCAGGCGTTCGTGTTGAAACAGCATTTGGCGGCGTACATGTGGTG
GGGGGTAACAATCAACATCTTCGCCATGGTGTTGGTTTCTGTTACAAACT
TCGTCGAACCCGAGGACGCGCAGCCCAATGGGGCGAATAATCCGACGTTG
GGAGCCTTCTTCATTCTTATGAGCTGCGCCTTTCCTCAGGCGTTCGTGTT
GAAACAGCATTTGGCGGCGTACATGTGGTGGGGGGTAACAATCAACATCT
TCGCCATGGTGTTGGTTTCTGTTACAAACTTCGTCGAACCCGAGGACGCG
CAGCCCAATGGGGCGAATAATCCGACGTTGGGAGCCTTCTTCATTCTTAT
GAGCTGCGCCGGTAGCCAGTACATCTTCGAAGAGAAGGTGATGGCCGTGG
ACAACGCCCCTCCTCTGATCGTGATCGGAATGGAGGGACTGTGGGGAACC
ATCATCATGTTCATTGTGCTTCCCATTGCGGCAATGCTGCCTGGCCGAGA
CCTGGGCTCGGTGGAGAACACGTGGGACTCTTTCTACATGGTTGGGGCCA
GTCAAGGAATTCAGGGTAGCCAGTACATCTTCGAAGAGAAGGTGATGGCC
GTGGACAACGCCCCTCCTCTGATCGTGATCGGAATGGAGGGACTGTGGGG
AACCATCATCATGTTCATTGTGCTTCCCATTGCGGCAATGCTGCCTGGCC
GAGACCTGGGCTCGGTGGAGAACACGTGGGACTCTTTCTACATGGTTGGG
GCCAGTCAAGGAATTCAGATAATGCTGGCCGTGTTTTTCGTGACCATAAC
GACGTACAACATCTTCTGCATCTATGTTACAGCCTACCTCAGATAATGCT
GGCCGTGTTTTTCGTGACCATAACGACGTACAACATCTTCTGCATCTATG
TTACAGCCTACCTCAGCGCAATCTGGCACGCGATCCTCGACAACTTCCGC
CCCTTGAGCGTGTGGGGCACGGACTTGGCTATCTACTATTTCATCACCAA
GGGCTCGTTCGGCGAGGCATGGACGAAATACAGCTGGCTACAATTTTCGG
GCATGATGCGCAATCTGGCACGCGATCCTCGACAACTTCCGCCCCTTGAG
CGTGTGGGGCACGGACTTGGCTATCTACTATTTCATCACCAAGGGCTCGT
TCGGCGAGGCATGGACGAAATACAGCTGGCTACAATTTTCGGGCATGATG
back to top