mRNA_H-paniculata_contig1667.3767.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1667.3767.1
Unique NamemRNA_H-paniculata_contig1667.3767.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig1667.3767.1 vs. uniprot
Match: D7G7W2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7W2_ECTSI)

HSP 1 Score: 132 bits (331), Expect = 1.400e-32
Identity = 72/137 (52.55%), Postives = 83/137 (60.58%), Query Frame = 1 
Query:  121 GPALVQLKIDAMFTPGGAHKTATNN-QERKTLPEGMDTENDGVAT----ATDDDI-----VRAEIGPTCYVCRGGLGNDGGDVLCSFCDRAACEGCSQNCCVCEMPHCSLCLAADFSTQFESYLCPPCIQDNKREAC 501
            G  LVQLKIDAMF   G   T  +    R    E  D E  G  +    A D D+      R E GP CY CRG LG  GGD+LCSFCDRAAC+ C Q C  CE+PHCSLCLAAD+++QFE Y CPPC QD + E+C
Sbjct:  156 GRTLVQLKIDAMFAVPGLPCTPPSECSGRNPDAELCDGECAGTTSRGDGAMDVDVGVGAEPREEGGPACYACRGALGTAGGDILCSFCDRAACQACWQRCSACEVPHCSLCLAADYNSQFECYFCPPCYQDERLESC 292
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BLAST of mRNA_H-paniculata_contig1667.3767.1 vs. uniprot
Match: A0A6H5LJI1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LJI1_9PHAE)

HSP 1 Score: 120 bits (302), Expect = 2.290e-28
Identity = 62/137 (45.26%), Postives = 75/137 (54.74%), Query Frame = 1 
Query:  121 GPALVQLKIDAMFTPGGAHKTATNNQERKTLPEGMDTENDGVATATDDDIVRAEIG----------PTCYVCRGGLGNDGGDVLCSFCDRAACEGCSQNCCVCEMPHCSLCLAADFSTQFESYLCPPCIQDNKREAC 501
            G  LVQLKIDAMF   G   T  +    +     +        T   D  +  ++G          P CY CRG LG  GGD+LCSFCDRAAC+ C Q C  C +PHCSLCLAAD+++QFE Y CP C QD + E C
Sbjct:  157 GRTLVQLKIDAMFAVPGLPCTPPSECSGRIANAELCDGECARTTCRGDGAMDVDVGVGAEPGEEGGPACYACRGALGTAGGDILCSFCDRAACQACWQRCSACGVPHCSLCLAADYNSQFECYFCPSCYQDKRLECC 293
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1667.3767.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G7W2_ECTSI1.400e-3252.55Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5LJI1_9PHAE2.290e-2845.26Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1667contigH-paniculata_contig1667:15164..19844 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionSiva
Ec32 orthologEc-06_000100.1
Exons2
Model size993
Cds size519
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1667.3767.1prot_H-paniculata_contig1667.3767.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1667 15626..19832 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929321.8107953-UTR-H-paniculata_contig1667:15163..156251622929321.8107953-UTR-H-paniculata_contig1667:15163..15625Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1667 15164..15625 -
1691480815.215762-UTR-H-paniculata_contig1667:15163..156251691480815.215762-UTR-H-paniculata_contig1667:15163..15625Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1667 15164..15625 -
1622929321.845099-UTR-H-paniculata_contig1667:19832..198441622929321.845099-UTR-H-paniculata_contig1667:19832..19844Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1667 19833..19844 -
1691480815.2409883-UTR-H-paniculata_contig1667:19832..198441691480815.2409883-UTR-H-paniculata_contig1667:19832..19844Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1667 19833..19844 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929321.8216496-CDS-H-paniculata_contig1667:15625..160351622929321.8216496-CDS-H-paniculata_contig1667:15625..16035Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1667 15626..16035 -
1691480815.2238722-CDS-H-paniculata_contig1667:15625..160351691480815.2238722-CDS-H-paniculata_contig1667:15625..16035Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1667 15626..16035 -
1622929321.8334308-CDS-H-paniculata_contig1667:19723..198321622929321.8334308-CDS-H-paniculata_contig1667:19723..19832Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1667 19724..19832 -
1691480815.2333577-CDS-H-paniculata_contig1667:19723..198321691480815.2333577-CDS-H-paniculata_contig1667:19723..19832Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1667 19724..19832 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1667.3767.1

>prot_H-paniculata_contig1667.3767.1 ID=prot_H-paniculata_contig1667.3767.1|Name=mRNA_H-paniculata_contig1667.3767.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=173bp
MQEGGAAPWGSGGWLGLSRRVGISESSAGRSREESQGPALVQLKIDAMFT
PGGAHKTATNNQERKTLPEGMDTENDGVATATDDDIVRAEIGPTCYVCRG
GLGNDGGDVLCSFCDRAACEGCSQNCCVCEMPHCSLCLAADFSTQFESYL
CPPCIQDNKREACGSSMDDVVT*
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mRNA from alignment at H-paniculata_contig1667:15164..19844-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1667.3767.1 ID=mRNA_H-paniculata_contig1667.3767.1|Name=mRNA_H-paniculata_contig1667.3767.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4681bp|location=Sequence derived from alignment at H-paniculata_contig1667:15164..19844- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAGGAAGGTCTCATGCAGGAGGGAGGGGCAGCGCCGTGGGGGAGCGGGGG
GTGGCTTGGACTCAGCCGACGAGTTGGCATTAGTGAAAGTTCGGCCGGAA
GAAGCAGAGAGGAAAGCCAAGGTAGGTGAACGGGTTGTCATGCACGGGAG
AGTCTGTCCCGTGATAGATGGAGACAGGATCGCGTGAACGCAGTGCGAAG
TGGAGAAGACTCTGGAGCTGACCTGTATAATCGATTTTTTCAATTTTGAG
CTGTGGAAAGGCATAATGCTTGAGGCTTGCTCCAGCACGGCGATACTGAA
CGGGCACTACAAGATGCGGAGGCTCCGATTATGATGCGCCTCGGTTACGA
GTCTTTTGCCCTATATGAAGCTCCTGCTGTTGTATTAGGCCGCGAAGCCA
CTAGCAGGAGCTTCACCCCACTCCATGTTTGATGTATGTTGCACTGACAA
TTTATCGTCATTATATACTATTATATACAATTCTCGTTTTTATTTTCAAC
TTCCTCTCTGTCTATCTTTATATAGGTACAGGTGGTAGCCTGCATGGTAA
TCTGCGTGGTAATATACATGCAGTATAAGAGAGAGTAGAGGGAACGATTG
CATACATGTTAGCGCAAAATGATCTTCACAATCGAAATATTGAAAGTGGG
TTTAGAGTATAAGGAACATCATTTTGCAAATTTCAGAGTACTAGATAACG
TGGTACTGTACGCACACAATATATTCGGGGGACAGTTATGATCGTCATCA
CTTTGTTTAATTGTGGGGACGGCGAGTCTGATCAAGGAGCGCTTGGCGTC
AAGCGTAGACTGGATTGTGTGCAACTTGTTGGTGCTTTTTTTGCAAGCGC
ACATTCAGCCACTGGGGGCAGTGCCTTGAGACACCTCCTGACAGTCAATA
GAGACGCCAGCAATCGGTCTATAGATATGTAGCTACATGGCATTCTTGAA
TTCAAGTGACTGTAGTGTTGATACAAGGGACTGCAGTGGTTGCGATGTTT
CCAACAAAAGAAACATGAGGCAGGAAGTCGCACTGATGATGAGCCCCTTG
GGATGAGCTTCATTTCCCCTGGCAAAACGTTAGACGATACCTTGAAAATA
ATCATTTTGTTTGGAACATCACACACAACTAATCCCAAGAGAATTTCGTG
AAGCGACCCGCAATCCAAACTACGGTCTTGGTGCAGAGTGTTAATTTGCT
TTCCTCAGCCCAGCCGAAATTGGAAGGGCTAGAGGGCGATACGCGCAGCT
GAGAACGAGCGGTCTGTCTTGCAGTCGCGTTTTGTGCATATATCAAAAAT
ACGAATTCCATCAGTGTCTTTTTAGTGTAGCAATAATATTGGCTCAGCAT
TTGCGTCCAATTTTGTGTTTGAACACACATGCATGCCACTTGAAGGAAAC
TACGGCTGCGCTGCCCCTCACAATCTATTTGTTCTTCGTTTGCTGTGTTA
GCGATACTTTTCGTAGCGTAGTCGATATTTGGAGGACTGAGAGGCGATGC
TCGTTGAGACAAAATAAGTTTTCTGGTGCGTCGGTTTAGTTTCGCAGTGC
TGCAGGCTGCTGTTGAACTTTTTTACAGCTGCGAAGCATCGGGTTCACCT
CGCGTAGTGGTGGGCCAACCGCAAACGTAATCCCAACATTGGCCAAATAA
TGATCAAATTCCCTGTTCATGTTTCCCTTGTAGCGCGGACTTTTTCGAGA
ACGCGCTCGCTCAAGACTATGTGGGGAAAATAATATATATATATTATTCT
AGCGGTAATCGGGTGCTTGAGATTAATGGAAAAGCAAAACTTGAAAAGAA
GTTCGCTCTGCGAACAGGTTATATCATTCCACTTTAAAATGCCCTCTTTC
AGCTTAGGCTAGCTGCATTGTCCATTTTTCATCATAGGACAAGCCGATCA
CATTAAAGTGGCGAAAGTCACTTCTGTGCAGAGGGATGTTTTGGTTTTTA
TCTCTCTTAGGGGGGCGCCTCCGAGGGGAAAGCCTACATCGGATGAAGGC
TCTCGTTGCATTTTTCGGAATAATTGAAAGTGAGTTGTTTCGCTCGTTTC
TCGTCACCAAGAATGTGACATAATTTGAGAGTAGATTTTGCGAGCCTGTA
ATGTTAACATTCGAACGATACCTGGCACGGACTATAACTCCCTGCCCTAC
AGGGTGCCAAAAAGAAGCAATGGAGTGTCAGCTTGGCACGTTTTTTCGTA
CGACGCATGCAAGTATCATTATCCGAGCGTACAGTTTTTATTATCCAATG
TTACGTTAGAGATGGCCCAATATTTCGCCATGTAATACAAATTTTTTTCG
GACAATTACAAATACTTAGCGTACTCGCCACCAAATTGAAGAGTGGTCGC
CTGAGTTTAGGAATGGACGAATACATGAAAATATAGAACCCACCGTTGCC
TATTCGATTAGGAGCATTATCAACAGTCGTGGATGGTCCGGGGTACATGA
AAAACACAAGCTCAGTGTGAAACTTTAGCGAATAGTTTTTAATTTTCGTG
GCGAATACGCCAAGTATTCGTTGTTGTTCGGGGGGTGAAATAGTGTCCAC
TGCATTGTTTTACATGTGTACCAGTGATGTACTTCTAACAATTACAAGAA
GATAATTTCAGTCATTTTTTTCACATCGTAATTATATACATATAATGGGT
CTATACGGAGCCCTCGCTTTCGAAGAAAAAGAGAGCCCCGGCATCCCTAA
TATGTTGTACTTGATTTCACCGAACAGAATGAACAAAAAATATGTATGAG
AAAATCCCTCTGTAGAAATCCATGAAGAATACAATTCCTAGTATTTGGAT
GTAATTCTGAAATGGAGAGTTCTTTTTTCGATTATGAAAAAATATTTTTC
GATATCTTTCGCCGATATCATGAGAACCCATCATAACACACATTGGTTTG
CAGAAGTTCCGCTACTTTGCCCTGCCCACAGTTTTGCGCCAGCATTGCTC
TTGCCTCTTTCCTTGTTTGCCAGCTTTCTGGGTCCGCGGCCGTTGTTATG
TATTACTGTGTTTTTATCCACCTCCGTAGTGTGTCCTGATTTATGTACCA
TACGATGGTGGACCGCCGAGCGTGGAAAACCAGGGGAGTGAGACTCGACG
AAGAGGCTGTCTATCATACCTTTCGCTCTCGGTAGCTCGATCGCGGTATC
CTCGTGTATTCACACAGGTGGCTGTTGTGGTGTTCACGTACAGCGAAACA
CAATAGTACACACATCGGAGGGTAATTCACAGACATGTCTTAAAAACATG
TCCTTGCTTTTCAAGGCAATCGTTGGCTGTGCTCCGCGCAAGGCAACCTC
GATGTGTATAGTTCGACTCCAACTACGGTGCTGTTTTATCCCATCAATGA
TACCCACATCTCCACACAATGTTTGTGTGCTAAGCGGAGGTTTAGTAGAG
CAGAACACATTGAAATTGTTTTTTGTAAATATTTTTTGCGTGAATTAAAC
TTCCTGTATCATAATGGTGCTCCAAAGGCAACCAGTGCGAGCTCCATTCC
TCTCCCACAGGACAGATAATTCTAGCCGACTGTTCTCGTACGTAGCTGCA
AAGCGTGGCACTCCTCTGTACACGCGTGTAAATTTCCAGGGACTGGTACT
GTGAGGGTACTGTGAGTATCGCTCCGTGTTTGCAAGATAACGTTTTTAGC
AAGACCCAAGCCATGCAACGTACTGTGGGCGCTACGTGTGCAACTGCCTT
CCATGCAGATGCTCACCTCAGACTTGTGATACGTCACAATTCACCATTTC
CTAACGCCAACCTAATTAGACCATGACATATGATTGTATTTTGTTTGTCC
CGCTGTCAGGCCCAGCACTGGTGCAGCTGAAGATAGATGCCATGTTCACC
CCTGGAGGTGCCCACAAGACTGCCACCAATAATCAGGAGCGCAAGACACT
CCCTGAGGGTATGGATACCGAGAACGACGGAGTAGCGACTGCAACTGACG
ACGATATTGTGCGCGCGGAAATAGGACCGACCTGCTATGTGTGTCGGGGA
GGGTTAGGAAATGACGGTGGAGATGTTTTGTGTTCTTTCTGCGATCGAGC
TGCGTGTGAAGGCTGCTCTCAGAATTGTTGTGTCTGTGAAATGCCACATT
GCAGCCTTTGCCTCGCTGCGGACTTCAGCACGCAGTTCGAGAGTTACCTG
TGTCCACCTTGCATCCAGGATAACAAACGGGAGGCATGTGGAAGCAGCAT
GGACGATGTGGTGACCTGAGGGCGGTGTTGTGTTGTTTTTCGCTTCATTT
TGTGTTGGCCGAAGTGCTATAGGCGCTAATGGTATAATAGACGTGTTGTA
GAGTAGAGCAAGTCCTCCATGCAGCAAGACACGCTTGCACACGAGTATAT
TTCGCAACTTGGAATAAGATATCTATTTGTAGCCATCATGGTCGGGGAGC
GGACTGACGAGTCGCCGCCTCCAAACGCAGCCAGCATCCATGTTCTCCGA
TTCAACGTAAGTGCGTTTGGTATGCATCTGCGTCGACTTTAGACTTCATG
TATTTCGTTTTGTGTATGCGAGGTTCTTCGTTTGCGATCTTCAGATACGT
CAAGCGAGTGATGATAGTACGGTGTGATGTTACATGAAACAAGTCCAGCC
GCGCTGCTAATAGGAGCATGCGCTGGTTATGTAAACTCATAAAAGTACAA
TAGTTTCTGCGGCAAGGTCCATGTACGGTAG
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Coding sequence (CDS) from alignment at H-paniculata_contig1667:15164..19844-

>mRNA_H-paniculata_contig1667.3767.1 ID=mRNA_H-paniculata_contig1667.3767.1|Name=mRNA_H-paniculata_contig1667.3767.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1038bp|location=Sequence derived from alignment at H-paniculata_contig1667:15164..19844- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCAGGAGGGAGGGGCAGCGCCGTGGGGGAGCGGGGGGTGGCTTGGACT
CAGCCGACGAGTTGGCATTAGTGAAAGTTCGGCCGGAAGAAGCAGAGAGG
AAAGCCAAGATGCAGGAGGGAGGGGCAGCGCCGTGGGGGAGCGGGGGGTG
GCTTGGACTCAGCCGACGAGTTGGCATTAGTGAAAGTTCGGCCGGAAGAA
GCAGAGAGGAAAGCCAAGGCCCAGCACTGGTGCAGCTGAAGATAGATGCC
ATGTTCACCCCTGGAGGTGCCCACAAGACTGCCACCAATAATCAGGAGCG
CAAGACACTCCCTGAGGGTATGGATACCGAGAACGACGGAGTAGCGACTG
CAACTGACGACGATATTGTGCGCGCGGAAATAGGACCGACCTGCTATGTG
TGTCGGGGAGGGTTAGGAAATGACGGTGGAGATGTTTTGTGTTCTTTCTG
CGATCGAGCTGCGTGTGAAGGCTGCTCTCAGAATTGTTGTGTCTGTGAAA
TGCCACATTGCAGCCTTTGCCTCGCTGCGGACTTCAGCACGCAGTTCGAG
AGTTACCTGTGTCCACCTTGCATCCAGGATAACAAACGGGAGGCATGTGG
AAGCAGCATGGACGATGTGGTGACCTGAGCCCAGCACTGGTGCAGCTGAA
GATAGATGCCATGTTCACCCCTGGAGGTGCCCACAAGACTGCCACCAATA
ATCAGGAGCGCAAGACACTCCCTGAGGGTATGGATACCGAGAACGACGGA
GTAGCGACTGCAACTGACGACGATATTGTGCGCGCGGAAATAGGACCGAC
CTGCTATGTGTGTCGGGGAGGGTTAGGAAATGACGGTGGAGATGTTTTGT
GTTCTTTCTGCGATCGAGCTGCGTGTGAAGGCTGCTCTCAGAATTGTTGT
GTCTGTGAAATGCCACATTGCAGCCTTTGCCTCGCTGCGGACTTCAGCAC
GCAGTTCGAGAGTTACCTGTGTCCACCTTGCATCCAGGATAACAAACGGG
AGGCATGTGGAAGCAGCATGGACGATGTGGTGACCTGA
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