mRNA_H-paniculata_contig16631.3750.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig16631.3750.1
Unique NamemRNA_H-paniculata_contig16631.3750.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig16631.3750.1 vs. uniprot
Match: D8LDG7_ECTSI (Putative ATP-dependent helicase YFR038W n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDG7_ECTSI)

HSP 1 Score: 359 bits (921), Expect = 5.790e-115
Identity = 182/239 (76.15%), Postives = 201/239 (84.10%), Query Frame = 1
Query:    1 RGWEFRRIDGSSEIQERQKCIDEYNNRPTLFVFLLSTRAGGLGINLCAADTVVLFDSDWNPHQDSQAMARCHRIGQKKPVMVYRLLTTGSVEIDMMEKQISKKKLERVTVQGGDFAKAGRRANGEMTVSHLRKLLEDDVEDLAKRATVSGAGDGVDRAITEEELDGILDRERVFASSTAQWGDSSATVNREWGRRGDGNDGAGWGERKEGRTGPVLPLPREGEMYDIVDELDASGLNAM 717
            RGWEF RIDGS+++ +RQ+ I+E+N+ P  FVFLLSTRAGGLGINLCAADT +LFDSDWNPHQDSQAMARCHRIGQ+KPVMVYRLLTTGSVEI+MM KQISKKKLERV VQGGDF KAGRR  GEMTV HLRKLLEDDVEDLAKRA    AGDGVD +ITEEELDGILDRERVFAS+ A WGDSS +    WG+RGDG       ER     GPV+PLPREGEMYD+VDELDAS L++M
Sbjct:  618 RGWEFHRIDGSTDVLDRQRQIEEFNSNPKFFVFLLSTRAGGLGINLCAADTCILFDSDWNPHQDSQAMARCHRIGQQKPVMVYRLLTTGSVEIEMMAKQISKKKLERVAVQGGDFGKAGRRTYGEMTVPHLRKLLEDDVEDLAKRALCPEAGDGVDLSITEEELDGILDRERVFASA-AGWGDSSLSGGARWGKRGDGGGXXXXXERT---GGPVVPLPREGEMYDVVDELDASVLSSM 852          
BLAST of mRNA_H-paniculata_contig16631.3750.1 vs. uniprot
Match: A0A6H5KPB1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPB1_9PHAE)

HSP 1 Score: 358 bits (919), Expect = 1.390e-114
Identity = 181/239 (75.73%), Postives = 199/239 (83.26%), Query Frame = 1
Query:    1 RGWEFRRIDGSSEIQERQKCIDEYNNRPTLFVFLLSTRAGGLGINLCAADTVVLFDSDWNPHQDSQAMARCHRIGQKKPVMVYRLLTTGSVEIDMMEKQISKKKLERVTVQGGDFAKAGRRANGEMTVSHLRKLLEDDVEDLAKRATVSGAGDGVDRAITEEELDGILDRERVFASSTAQWGDSSATVNREWGRRGDGNDGAGWGERKEGRTGPVLPLPREGEMYDIVDELDASGLNAM 717
            RGWEF RIDGS+++ +RQ  I+E+N+ P  FVFLLSTRAGGLGINLCAADT +LFDSDWNPHQDSQAMARCHRIGQ+KPVMVYRLLTTGSVEI+MM KQISKKKLERV VQGGDF KAG+R  GEMTV HLRKLLEDDVEDLAKRA    AGDGVDR+ITEEELDGILDRERVFAS+T  WGDSS      WG+R    DGAG         GPV+PLPREGEMYD+VDELDAS L++M
Sbjct:  670 RGWEFHRIDGSTDVLDRQSQIEEFNSNPKFFVFLLSTRAGGLGINLCAADTCILFDSDWNPHQDSQAMARCHRIGQQKPVMVYRLLTTGSVEIEMMAKQISKKKLERVAVQGGDFGKAGKRTYGEMTVPHLRKLLEDDVEDLAKRALCPEAGDGVDRSITEEELDGILDRERVFASATG-WGDSSLLGGARWGKR---EDGAGXXXXXXXTGGPVVPLPREGEMYDVVDELDASVLSSM 904          
BLAST of mRNA_H-paniculata_contig16631.3750.1 vs. uniprot
Match: A0A835Z5K9_9STRA (SNF2 family N-terminal domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5K9_9STRA)

HSP 1 Score: 228 bits (580), Expect = 3.110e-67
Identity = 133/243 (54.73%), Postives = 161/243 (66.26%), Query Frame = 1
Query:    1 RGWEFRRIDGSSEIQERQKCIDEYNNRPT---LFVFLLSTRAGGLGINLCAADTVVLFDSDWNPHQDSQAMARCHRIGQKKPVMVYRLLTTGSVEIDMMEKQISKKKLERVTVQGGDFAKAGRRANGEMTVSHLRKLLEDDVEDLAKRATVSGAGDGVDRAITEEELDGILDRERVFASSTAQWGDSSATVNREWGRRGDGNDGAGWGERKEGRTGPVLPLPREGEMYDIVDELDASGLNAMA 720
            R W + RIDG+S + +RQ  ID +NN  T   LFVFLLSTRAGGLGINL AADTVV+FDSDWNPHQDSQA  RCHRIGQ+ PV+VYRLLT  SVEIDMMEKQISKKKLER+ V GGDF K G+R+ G +T   LR LL DD+ +L +RA  +GAG     AI+EEEL+ +LDR+ +F       GD    + R            G     +G+T     +P+EG MYD+VD    S L+ MA
Sbjct:  390 RDWGYCRIDGTSALIDRQASIDAFNNGETNDDLFVFLLSTRAGGLGINLTAADTVVIFDSDWNPHQDSQAQDRCHRIGQQHPVVVYRLLTLSSVEIDMMEKQISKKKLERMAVAGGDFRKVGQRSRGALTSQALRGLLADDIANLQQRAA-AGAGSSAG-AISEEELEMVLDRQLIF-------GDDPVYLAR------------GGVPAPDGKT-----IPKEGHMYDVVDASIDSILDEMA 606          
BLAST of mRNA_H-paniculata_contig16631.3750.1 vs. uniprot
Match: A0A7S2BZ69_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BZ69_9STRA)

HSP 1 Score: 215 bits (547), Expect = 1.810e-65
Identity = 119/238 (50.00%), Postives = 154/238 (64.71%), Query Frame = 1
Query:    1 RGWEFRRIDGSSEIQERQKCIDEYNNRPTLFVFLLSTRAGGLGINLCAADTVVLFDSDWNPHQDSQAMARCHRIGQKKPVMVYRLLTTGSVEIDMMEKQISKKKLERVTVQGGDFAKAGRRA-NGEMTVSHLRKLLEDDVEDLAKRATVSGAGDGVDRAITEEELDGILDRERVFASSTAQWGDSSATVNREWGRRGDGNDGAGWGERKEGRTGPVLPLPREGEMYDIV--DELDASG 705
            R W + RIDG+ +I ERQ+ +D +N    +F F+LSTRAGGLGINL AADTV++FDSDWNPHQD+QA  RCHRIGQ +PV+VYRLLT GSVEIDMMEKQ+SKKKLER+ V GG+FA+ G+R  N ++TV  LR LL DDV +L+ R T     +G    I E EL+ I+DR+R+F                +W   G     +G    K+       P+P EG+ YDI+   + D+ G
Sbjct:   95 REWRYCRIDGNVKIGERQQSMDAFNKEEDIFAFMLSTRAGGLGINLQAADTVIIFDSDWNPHQDAQAQDRCHRIGQTRPVVVYRLLTIGSVEIDMMEKQVSKKKLERMCVSGGNFARPGKRTGNTKITVDDLRNLLSDDVANLSGRGTADNKYEG----IGETELEMIMDRQRLFG---------------DWKADGFSTLASGVNSTKD-------PVPPEGQYYDIITASQQDSGG 306          
BLAST of mRNA_H-paniculata_contig16631.3750.1 vs. uniprot
Match: A0A7S2NXS4_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2NXS4_9STRA)

HSP 1 Score: 207 bits (527), Expect = 9.630e-64
Identity = 108/191 (56.54%), Postives = 133/191 (69.63%), Query Frame = 1
Query:    1 RGWEFRRIDGSSEIQERQKCIDEYNNRPT-------------LFVFLLSTRAGGLGINLCAADTVVLFDSDWNPHQDSQAMARCHRIGQKKPVMVYRLLTTGSVEIDMMEKQISKKKLERVTVQGGDFAKAGRRANGEMTVSHLRKLLEDDVEDLAKRATVSGAGDGVDRAITEEELDGILDRERVFASST 534
            R W + RIDG+++I ERQ+ +D +N   T              FVFLLSTRAGGLGINL AADT ++FDSDWNPHQDSQAM RCHRIGQ  PV VYRLLT GSV+I+MMEKQISKKKLER+ + GGDF KAGRR+ GE +   L  LL+DD++DL  R      GD     I  +E DGI++R+++F+  T
Sbjct:    4 RKWNYCRIDGTTKIDERQRQMDVFNAEKTGGADGKRNTSDDRTFVFLLSTRAGGLGINLTAADTCIIFDSDWNPHQDSQAMDRCHRIGQTNPVAVYRLLTAGSVDIEMMEKQISKKKLERMAITGGDFRKAGRRSKGEFSAKDLSTLLQDDIKDLQARG-----GDVEHVMIDGDEFDGIMNRKKLFSQGT 189          
BLAST of mRNA_H-paniculata_contig16631.3750.1 vs. uniprot
Match: A0A7S0BX46_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0BX46_9STRA)

HSP 1 Score: 210 bits (535), Expect = 5.710e-62
Identity = 112/187 (59.89%), Postives = 134/187 (71.66%), Query Frame = 1
Query:    1 RGWEFRRIDGSSEIQERQKCIDEYNNRPT-------------LFVFLLSTRAGGLGINLCAADTVVLFDSDWNPHQDSQAMARCHRIGQKKPVMVYRLLTTGSVEIDMMEKQISKKKLERVTVQGGDFAKAGRRANGEMTVSHLRKLLEDDVEDLAKRATVSGAGDGVDRAITEEELDGILDRERVF 522
            R W++ RIDGS++I +RQK +D +N   T             +FVFLLSTRAGGLGINL AADT ++FDSDWNPHQDSQAM RCHRIGQ +PV VYRLLT GSV+I+MMEKQISKKKLER+ + GGDF KAG R+ G  +   L  LLEDD+EDL  +A     G   D AI E ELD ILDR+++F
Sbjct:  249 RRWKYCRIDGSTKIDDRQKQMDVFNAEKTSGADGGRNESDERMFVFLLSTRAGGLGINLTAADTCIIFDSDWNPHQDSQAMDRCHRIGQTRPVAVYRLLTAGSVDIEMMEKQISKKKLERMAIVGGDFRKAGARSKGAFSAKALSSLLEDDIEDLQAKA-----GGIEDIAIDEVELDQILDRKKLF 430          
BLAST of mRNA_H-paniculata_contig16631.3750.1 vs. uniprot
Match: A0A7S2G339_9STRA (Hypothetical protein n=2 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2G339_9STRA)

HSP 1 Score: 216 bits (551), Expect = 7.210e-62
Identity = 120/242 (49.59%), Postives = 153/242 (63.22%), Query Frame = 1
Query:    4 GWEFRRIDGSSEIQERQKCIDEYNNRPTLFVFLLSTRAGGLGINLCAADTVVLFDSDWNPHQDSQAMARCHRIGQKKPVMVYRLLTTGSVEIDMMEKQISKKKLERVTVQGGDFAKAGRRANGEMTVSHLRKLLEDDVEDLAKRATVSGAGDGVDRAITEEELDGILDRERVFASSTAQWGDSSATVNREWGRRGDGNDGAGWGERKEGRTGPVLPLPREGEMYDIV---DELDASGLNAMA 720
            GW   RIDGS +IQERQK +D +NN P +F+F+LSTRAGGLGINL AADTV++FDSDWNPHQD+QA  RCHRIGQ +PV+VYRLLT GSVEIDMMEKQISKKKLER+ + GG+F++ G+R   +M++  L+ LL DDV DL  RA      +G    I+ EEL  +LDR R+F                      DG++G                +P EG  YD++   D  D   L++M+
Sbjct:  568 GWRTCRIDGSIKIQERQKQMDAFNNDPDIFIFMLSTRAGGLGINLQAADTVIIFDSDWNPHQDAQAQDRCHRIGQTRPVVVYRLLTIGSVEIDMMEKQISKKKLERMAITGGNFSRPGQRNKTKMSLESLKALLADDVSDLQGRADAEDLTNG----ISNEELSLVLDRPRLFEL--------------------DGSEG----------------IPPEGAFYDVLKVSDTEDGGILSSMS 769          
BLAST of mRNA_H-paniculata_contig16631.3750.1 vs. uniprot
Match: A0A6U1QEQ7_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A6U1QEQ7_9STRA)

HSP 1 Score: 216 bits (549), Expect = 1.700e-61
Identity = 108/185 (58.38%), Postives = 136/185 (73.51%), Query Frame = 1
Query:    1 RGWEFRRIDGSSEIQERQKCIDEYNNRPTLFVFLLSTRAGGLGINLCAADTVVLFDSDWNPHQDSQAMARCHRIGQKKPVMVYRLLTTGSVEIDMMEKQISKKKLERVTVQGGDFAKAGRRANGE--MTVSHLRKLLEDDVEDLAKRATVSGAGDGVDRAITEEELDGILDRERVFASSTAQWGD 549
            RGW + RIDGS  + +RQ+ I+ +N+ P +F+FLLSTRAGGLGINL AADT +++DSDWNPHQDSQA  RCHRIGQKKPVMVYR LT GSVEI+MMEK ISKKKLER+ + GGDF  AGRR   E  M +  L+KLLEDD++ LA+ +    + +     ++E EL+ ILDR  +F+    Q GD
Sbjct:  589 RGWRYCRIDGSVNVFDRQEMIESFNSDPDVFIFLLSTRAGGLGINLAAADTCIIYDSDWNPHQDSQAQDRCHRIGQKKPVMVYRFLTGGSVEIEMMEKAISKKKLERMAIVGGDFHMAGRRRTSEAGMNIDRLQKLLEDDIDSLARMSKEENSAE-----MSETELNTILDRNLIFSEQCPQTGD 768          
BLAST of mRNA_H-paniculata_contig16631.3750.1 vs. uniprot
Match: A0A835ZBT7_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZBT7_9STRA)

HSP 1 Score: 209 bits (533), Expect = 1.430e-59
Identity = 119/238 (50.00%), Postives = 150/238 (63.03%), Query Frame = 1
Query:    1 RGWEFRRIDGSSEIQERQKCIDEYNN---RPTLFVFLLSTRAGGLGINLCAADTVVLFDSDWNPHQDSQAMARCHRIGQKKPVMVYRLLTTGSVEIDMMEKQISKKKLERVTVQGGDFAKAGRRANGEMTVSHLRKLLEDDVEDLAKRATVS------GAGDGVDRAITEEELDGILDRERVFASSTAQWGDSSATVNREWGRRGDGNDGAGWGERKEGRTGPVLPLPREGEMYDIVD 687
            R W + RIDGSS +  RQ  ID +N       L +FLLSTRAGGLGINL AADTV+L+DSDWNPHQD+QA  RCHRIGQ+ PV+VYRLLT  SVEI+MMEKQ+SKKKLER+ + GGDF K GRR+ G +T   LR+LL D++ +L +RA          A    + AI+E+ELD I+DR+R+F       GD +   NR      +G+                  +P+EG MYD VD
Sbjct:  493 RRWGYCRIDGSSPLAGRQASIDAFNAGAMEEDLVIFLLSTRAGGLGINLAAADTVILYDSDWNPHQDTQAQDRCHRIGQQHPVVVYRLLTMASVEIEMMEKQMSKKKLERMAIAGGDFRKVGRRSRGALTPQALRRLLADEIANLRQRAEAGPETAAVNAQSTTEGAISEDELDVIMDRQRIF-------GDYAVYSNRSGVPPTEGD-----------------LIPKEGHMYDFVD 706          
BLAST of mRNA_H-paniculata_contig16631.3750.1 vs. uniprot
Match: F0Y786_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y786_AURAN)

HSP 1 Score: 207 bits (527), Expect = 1.330e-58
Identity = 108/179 (60.34%), Postives = 132/179 (73.74%), Query Frame = 1
Query:    1 RGWEFRRIDGSSEIQERQKCIDEYNNRPT----LFVFLLSTRAGGLGINLCAADTVVLFDSDWNPHQDSQAMARCHRIGQKKPVMVYRLLTTGSVEIDMMEKQISKKKLERVTVQGGDFAKAGRRANGEMTVSHLRKLLEDDVEDLAKRATVSGAGDGVDRAITEEELDGILDRERVFA 525
            R W + RIDG  E+ ERQ+ ID +N         FVF+LSTRAGGLGINL  ADTV+LFDSDWNPHQD+QAM R HRIGQK+ V+VYR LT+GS EI MMEKQISKKKLER+ VQGGD+ KAGRR+ GE+T   LR LL DDV  +A+R   +G     D  I+E+ELD ++DR ++F+
Sbjct:  534 REWNYFRIDGGVELSERQRQIDAFNGEGQESNEYFVFMLSTRAGGLGINLATADTVILFDSDWNPHQDAQAMDRAHRIGQKRDVVVYRFLTSGSAEIGMMEKQISKKKLERMAVQGGDYNKAGRRSRGELTTDGLRSLLNDDVN-IAQRIGAAGDNATADE-ISEQELDLVMDRAKIFS 710          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig16631.3750.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LDG7_ECTSI5.790e-11576.15Putative ATP-dependent helicase YFR038W n=1 Tax=Ec... [more]
A0A6H5KPB1_9PHAE1.390e-11475.73Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835Z5K9_9STRA3.110e-6754.73SNF2 family N-terminal domain-containing protein n... [more]
A0A7S2BZ69_9STRA1.810e-6550.00Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A7S2NXS4_9STRA9.630e-6456.54Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A7S0BX46_9STRA5.710e-6259.89Hypothetical protein n=1 Tax=Proboscia inermis Tax... [more]
A0A7S2G339_9STRA7.210e-6249.59Hypothetical protein n=2 Tax=Dictyocha speculum Ta... [more]
A0A6U1QEQ7_9STRA1.700e-6158.38Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A835ZBT7_9STRA1.430e-5950.00P-loop containing nucleoside triphosphate hydrolas... [more]
F0Y786_AURAN1.330e-5860.34Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig16631contigH-paniculata_contig16631:1693..5423 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score247.7
Seed ortholog evalue4.1e-63
Seed eggNOG ortholog2880.D8LDG7
KEGG koko:K19001
Hectar predicted targeting categoryother localisation
EggNOG free text desc.helicase activity
EggNOG OGsCOG0553@1,KOG0385@2759
COG Functional cat.KL
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036
Exons4
Model size767
Cds size522
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig16631.3750.1prot_H-paniculata_contig16631.3750.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig16631 1737..3346 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929319.581998-UTR-H-paniculata_contig16631:1692..17361622929319.581998-UTR-H-paniculata_contig16631:1692..1736Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig16631 1693..1736 -
1691480814.113305-UTR-H-paniculata_contig16631:1692..17361691480814.113305-UTR-H-paniculata_contig16631:1692..1736Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig16631 1693..1736 -
1622929319.6370459-UTR-H-paniculata_contig16631:3346..33491622929319.6370459-UTR-H-paniculata_contig16631:3346..3349Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig16631 3347..3349 -
1691480814.154142-UTR-H-paniculata_contig16631:3346..33491691480814.154142-UTR-H-paniculata_contig16631:3346..3349Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig16631 3347..3349 -
1622929319.654725-UTR-H-paniculata_contig16631:5225..54231622929319.654725-UTR-H-paniculata_contig16631:5225..5423Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig16631 5226..5423 -
1691480814.1637812-UTR-H-paniculata_contig16631:5225..54231691480814.1637812-UTR-H-paniculata_contig16631:5225..5423Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig16631 5226..5423 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929319.596535-CDS-H-paniculata_contig16631:1736..20091622929319.596535-CDS-H-paniculata_contig16631:1736..2009Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16631 1737..2009 -
1691480814.12718-CDS-H-paniculata_contig16631:1736..20091691480814.12718-CDS-H-paniculata_contig16631:1736..2009Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16631 1737..2009 -
1622929319.6088128-CDS-H-paniculata_contig16631:2585..27381622929319.6088128-CDS-H-paniculata_contig16631:2585..2738Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16631 2586..2738 -
1691480814.1369433-CDS-H-paniculata_contig16631:2585..27381691480814.1369433-CDS-H-paniculata_contig16631:2585..2738Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16631 2586..2738 -
1622929319.6230576-CDS-H-paniculata_contig16631:3250..33461622929319.6230576-CDS-H-paniculata_contig16631:3250..3346Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16631 3251..3346 -
1691480814.1455915-CDS-H-paniculata_contig16631:3250..33461691480814.1455915-CDS-H-paniculata_contig16631:3250..3346Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16631 3251..3346 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig16631.3750.1

>prot_H-paniculata_contig16631.3750.1 ID=prot_H-paniculata_contig16631.3750.1|Name=mRNA_H-paniculata_contig16631.3750.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=174bp
MARCHRIGQKKPVMVYRLLTTGSVEIDMMEKQISKKKLERVTVQGGDFAK
AGRRANGEMTVSHLRKLLEDDVEDLAKRATVSGAGDGVDRAITEEELDGI
LDRERVFASSTAQWGDSSATVNREWGRRGDGNDGAGWGERKEGRTGPVLP
LPREGEMYDIVDELDASGLNAMA*
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mRNA from alignment at H-paniculata_contig16631:1693..5423-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig16631.3750.1 ID=mRNA_H-paniculata_contig16631.3750.1|Name=mRNA_H-paniculata_contig16631.3750.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3731bp|location=Sequence derived from alignment at H-paniculata_contig16631:1693..5423- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGGGGGTGGGAGTTTCGACGCATCGATGGCAGCTCGGAAATTCAGGAGCG GCAGAAGTGCATCGACGAGTATAATAATCGGCCCACGTTGTTCGTATTCC TGCTCTCCACGAGAGCTGGCGGGTTGGGGATCAACCTTTGCGCCGCGGAC ACGGTGGTACTGTTTGACTCGGACTGGAACCCTCATCAAGACAGTCAGGT TTGCTGGGTGTTGATCCTGAAAAGCATAGCGTGGTGCGGTGTAAGTACGA TCCATTTTGATGCAAAAATTGTGTGCATTCGAACAGGGGGAAATGCTTCG GGTGATTTTTTTTATTTTTTATTTTTTTATTTTTTTCACATAATCTAGTT GAAAACACAGAATATGGACGAAGAATAACGTTGCTGGTAGTCATCAGCCT GGGCCCAGTCAGACGGAACAGCAAACCTTGAACCGGCGTGTTGTGTTTCT CGCTCCTTTTTTTTTTATTAGTGTTCGGGACACCGAATTTCGACGGGAGG ATGCACATTAACCAATTCGAAGACAAGCTTCAACGTTTGTCTTGTATTGG TCGGAAAGTTCAGTACCCGTTTGTTGATTTTGTTGATTTTGTTGATTTTC TGACCTGCAGATTCAAGATTCAGCACGGTTGGTTCTCGGGACGAAAATAA ACAGATAAATTTGGCGTTGACAGAATGTTCATGGACGATCCTTGTTTGCT ATTTATTTACCCATCAACCAACGGAACAATTTCTTGCCTTTTTGTCGGAA TTTTCAAATGTAACATGTCGCAAATGTTGGGGAAAGATGCGCGACCTACA ATTGAAATCCGAATCTGTAGGGCCTACCTTCGGAACATATTGTGGTTGGC TAATGGCGTCCAACCCGAGATTAACCGTATGCCTGAAACACGAGGAACTT GTCGGTCGTGAAGTGCATCTTCCGTATGTGAGCTGTATCCACCTCTGTCA CGTTCATTGATCGAAGGCTTCCCCTGTGCTTGCCGTCGCCGTACCTACTA CAGTATCGTCCTAATTCCTCTGTGACCTGTGGTTTCACTGTGCCTTGTTC ACTGCTGCTGCTGTGTTTGTATCTGAGGCGATTGCAACGAGCTTGCATGC TCATGCAGCAATGTTGGGTTTGGCACGGGGGTAGGTTCGTTGAAAGAAAG TCTGAGTGGGGTTTCGCTGTCGTCTGCTCTGTTGCCTTTCGTTTCATACC TGTGCACAGGAGCAAAAAAGCGAAAACACTTGGATAAAGTAGGCACATAT ATCGGGAAAGTTTTACCACAATTTGAATTTCCACAAAGTCATTTTTTCAA CGGTCAGATTGTGACAGGAATTGTTTGCTCCAACCGAAAAAGAAATGTAC TCAAACAAATTGAAATTTGGAAAAAAAATGTCTCGTCTTTTTTTTTTTTT TTTTTTTGCAAACTCTCGATGCGTTTCCATCCGGAATCAGAAATGAAGGC TTGTGGTATTTTTTTTGTACAAAGATTACGTACGTCCGAATTCCACACAG AATCGTTCTGGGGTTGCTTGCTCACAGGGTTGCAGGTACTCCCAGCTTTA TGCTTGTGTCCTTCCCAGTAGAGTAGGTCTTAACGTGGTGATACTGAGCG AGTAGGAGGAAGGGTTTCGTTCTTGCTTCGCGCATGTCGAAGAGATCTAT GAAGAGAACCGACTAGTTAAGTTGTGTATTTTGAAGGCATTAGGACGTGA AGATAGATTCTTCGTTATGAAAGTTCTTGTGCTGTTTTTGCTCCGATCGA TACACACAATAAATCTCCACGCGGACGGCGCGAACGTTTTGACAGTTTAT CCATGATACCGAGGTCTTGTACAGGTATGTGGGCTGCGTTTTGTTTTACC ACACCCTTCGACGAAGCGGTGATTTAAAAAAAGAAAATTAGTGGGTTACT ATTGCTTACTTAGTTTCCTGCTAATCCTTATCCAGGCGTCTAAATGCTCG TTTATATGCTTGTTCCCCTATCATAATAGAAGCCAGCCACCGCCCTCGGC GCTTTTCCCTGTTCTCCTGCTGAAATCTCTCACCTTTTGCCTTGTTTGTT TTTTCTCTTCTTGTGATTGGCCAGGCGATGGCTCGGTGCCACCGGATTGG TCAAAAAAAGCCTGTCATGGTGTACCGCCTACTTACAACAGGGAGCGTGG AGATTGACATGATGGAGAAGCAGGTGAAGGTTATTTTCGAAGCTGTTTTG TTTAGAGACGACGTGCGTCGTCTATCTTTATTATTATTATTATTTTTTAA TAGCTCCTTTGCACAGAAAGATTGAGGCGGTGATTGACTAACGTGACGCA AGCAAGCAAGCTAGTTGGCTAGCTGGGTTTAACACGTGGTACGTATAAAC CAACCGCTTCTTTTTCGGTTGACGGAATGGTTGATTGTTCATGACACGGT TGACTAGGGGGAGGGAATTAGTGATATTTTTGAGCTGGGGAAGAGACGCC CAACCTCGATTTTTTTTTTTTTGTCTTGACTTTATTTTATTATTATTTTT TTTTATTCAAGTCGCTGGCGAGTGGAGCCAGGCTCGATGTAATGTACTAT TTTAAATGTACCATGATGACCCAAGCGATCTTCACCTTTTGATGTTTGGA TCGATTTTCGAGGGAGTTCCAAGCACTTGCTGCATGATGCCATGGATCCG TACCTTTTTTTGCCGCTGTTTGTTTTGTGTTGCAGATTTCTAAGAAGAAG CTGGAACGGGTGACGGTCCAAGGAGGGGACTTCGCCAAAGCCGGACGACG CGCGAACGGCGAAATGACGGTTTCTCATCTCCGTAAGCTGTTGGAGGATG ACGTCGAGGATCTCGCCAAGCGTGCCACTGTCTCGGGGGTAAATAAATAT ATATATATATATATATTTTTTTTTTTCGTTTCGTTTATTTTTTCGCGGTA CGTCTGGCTCATGATGATGATATCCTTGCGGTTTGACCGATGGTATACTC ACATCTCTGTACATACCATGCAGCGCTAGGCCGGTATCCGAATATAGGCT GGACACTCCTCTGTCTTCTGTTGTCCACACCGCGAGTCGAGGTGTGTATT GGATGGGCTTGATTGCCGTCGTACGCAAGACAACCGCAAGTGTATGGTTT GTGTATGCTTGTTTTTGGTCAATGCACAAGGCTGAAAAATTCGGAAAGCT TCCATTGTGTGTGGCAAATTTCAATTTCTTGCGTGCCCACTGGAGAATAG CCAAAAAAACGCATTGGTAGTAATAACTGGGAAACAATGGTACGGTGATG ACACACAACGGACAGCCTTACTCTCTGCACGTAAAGTTTTGATCCCCCTT GAACGACGAAAATGATACGAGGATATATCTCTACGAATATAATCGCTCGG GTGGCCAAACTGCTTCTCAACAAAACTCACACCCACACGAATTCTGCACT CTGCTGAATCACAGGCAGGAGATGGAGTGGATCGAGCCATTACCGAGGAA GAGCTAGACGGGATCCTGGACAGGGAGAGAGTCTTTGCCTCCTCCACGGC ACAATGGGGCGACAGCTCAGCCACCGTCAACCGCGAATGGGGCAGGCGTG GCGACGGCAACGATGGTGCCGGATGGGGGGAGCGAAAAGAGGGCAGAACT GGCCCTGTGCTGCCCCTTCCTAGAGAGGGCGAGATGTATGATATCGTGGA CGAGTTGGATGCTAGTGGACTTAATGCTATGGCTTGATGTTGTGACAAAA AGTGAGGCAATTGAAGGCACGCGCGACCGGG
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Coding sequence (CDS) from alignment at H-paniculata_contig16631:1693..5423-

>mRNA_H-paniculata_contig16631.3750.1 ID=mRNA_H-paniculata_contig16631.3750.1|Name=mRNA_H-paniculata_contig16631.3750.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1044bp|location=Sequence derived from alignment at H-paniculata_contig16631:1693..5423- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCTCGGTGCCACCGGATTGGTCAAAAAAAGCCTGTCATGGTGTACCG
CCTACTTACAACAGGGAGCGTGGAGATTGACATGATGGAGAAGCAGATGG
CTCGGTGCCACCGGATTGGTCAAAAAAAGCCTGTCATGGTGTACCGCCTA
CTTACAACAGGGAGCGTGGAGATTGACATGATGGAGAAGCAGATTTCTAA
GAAGAAGCTGGAACGGGTGACGGTCCAAGGAGGGGACTTCGCCAAAGCCG
GACGACGCGCGAACGGCGAAATGACGGTTTCTCATCTCCGTAAGCTGTTG
GAGGATGACGTCGAGGATCTCGCCAAGCGTGCCACTGTCTCGGGGATTTC
TAAGAAGAAGCTGGAACGGGTGACGGTCCAAGGAGGGGACTTCGCCAAAG
CCGGACGACGCGCGAACGGCGAAATGACGGTTTCTCATCTCCGTAAGCTG
TTGGAGGATGACGTCGAGGATCTCGCCAAGCGTGCCACTGTCTCGGGGGC
AGGAGATGGAGTGGATCGAGCCATTACCGAGGAAGAGCTAGACGGGATCC
TGGACAGGGAGAGAGTCTTTGCCTCCTCCACGGCACAATGGGGCGACAGC
TCAGCCACCGTCAACCGCGAATGGGGCAGGCGTGGCGACGGCAACGATGG
TGCCGGATGGGGGGAGCGAAAAGAGGGCAGAACTGGCCCTGTGCTGCCCC
TTCCTAGAGAGGGCGAGATGTATGATATCGTGGACGAGTTGGATGCTAGT
GGACTTAATGCTATGGCTTGAGCAGGAGATGGAGTGGATCGAGCCATTAC
CGAGGAAGAGCTAGACGGGATCCTGGACAGGGAGAGAGTCTTTGCCTCCT
CCACGGCACAATGGGGCGACAGCTCAGCCACCGTCAACCGCGAATGGGGC
AGGCGTGGCGACGGCAACGATGGTGCCGGATGGGGGGAGCGAAAAGAGGG
CAGAACTGGCCCTGTGCTGCCCCTTCCTAGAGAGGGCGAGATGTATGATA
TCGTGGACGAGTTGGATGCTAGTGGACTTAATGCTATGGCTTGA
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