mRNA_H-paniculata_contig16631.3750.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig16631.3750.1 vs. uniprot
Match: D8LDG7_ECTSI (Putative ATP-dependent helicase YFR038W n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDG7_ECTSI) HSP 1 Score: 359 bits (921), Expect = 5.790e-115 Identity = 182/239 (76.15%), Postives = 201/239 (84.10%), Query Frame = 1
Query: 1 RGWEFRRIDGSSEIQERQKCIDEYNNRPTLFVFLLSTRAGGLGINLCAADTVVLFDSDWNPHQDSQAMARCHRIGQKKPVMVYRLLTTGSVEIDMMEKQISKKKLERVTVQGGDFAKAGRRANGEMTVSHLRKLLEDDVEDLAKRATVSGAGDGVDRAITEEELDGILDRERVFASSTAQWGDSSATVNREWGRRGDGNDGAGWGERKEGRTGPVLPLPREGEMYDIVDELDASGLNAM 717
RGWEF RIDGS+++ +RQ+ I+E+N+ P FVFLLSTRAGGLGINLCAADT +LFDSDWNPHQDSQAMARCHRIGQ+KPVMVYRLLTTGSVEI+MM KQISKKKLERV VQGGDF KAGRR GEMTV HLRKLLEDDVEDLAKRA AGDGVD +ITEEELDGILDRERVFAS+ A WGDSS + WG+RGDG ER GPV+PLPREGEMYD+VDELDAS L++M
Sbjct: 618 RGWEFHRIDGSTDVLDRQRQIEEFNSNPKFFVFLLSTRAGGLGINLCAADTCILFDSDWNPHQDSQAMARCHRIGQQKPVMVYRLLTTGSVEIEMMAKQISKKKLERVAVQGGDFGKAGRRTYGEMTVPHLRKLLEDDVEDLAKRALCPEAGDGVDLSITEEELDGILDRERVFASA-AGWGDSSLSGGARWGKRGDGGGXXXXXERT---GGPVVPLPREGEMYDVVDELDASVLSSM 852
BLAST of mRNA_H-paniculata_contig16631.3750.1 vs. uniprot
Match: A0A6H5KPB1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPB1_9PHAE) HSP 1 Score: 358 bits (919), Expect = 1.390e-114 Identity = 181/239 (75.73%), Postives = 199/239 (83.26%), Query Frame = 1
Query: 1 RGWEFRRIDGSSEIQERQKCIDEYNNRPTLFVFLLSTRAGGLGINLCAADTVVLFDSDWNPHQDSQAMARCHRIGQKKPVMVYRLLTTGSVEIDMMEKQISKKKLERVTVQGGDFAKAGRRANGEMTVSHLRKLLEDDVEDLAKRATVSGAGDGVDRAITEEELDGILDRERVFASSTAQWGDSSATVNREWGRRGDGNDGAGWGERKEGRTGPVLPLPREGEMYDIVDELDASGLNAM 717
RGWEF RIDGS+++ +RQ I+E+N+ P FVFLLSTRAGGLGINLCAADT +LFDSDWNPHQDSQAMARCHRIGQ+KPVMVYRLLTTGSVEI+MM KQISKKKLERV VQGGDF KAG+R GEMTV HLRKLLEDDVEDLAKRA AGDGVDR+ITEEELDGILDRERVFAS+T WGDSS WG+R DGAG GPV+PLPREGEMYD+VDELDAS L++M
Sbjct: 670 RGWEFHRIDGSTDVLDRQSQIEEFNSNPKFFVFLLSTRAGGLGINLCAADTCILFDSDWNPHQDSQAMARCHRIGQQKPVMVYRLLTTGSVEIEMMAKQISKKKLERVAVQGGDFGKAGKRTYGEMTVPHLRKLLEDDVEDLAKRALCPEAGDGVDRSITEEELDGILDRERVFASATG-WGDSSLLGGARWGKR---EDGAGXXXXXXXTGGPVVPLPREGEMYDVVDELDASVLSSM 904
BLAST of mRNA_H-paniculata_contig16631.3750.1 vs. uniprot
Match: A0A835Z5K9_9STRA (SNF2 family N-terminal domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5K9_9STRA) HSP 1 Score: 228 bits (580), Expect = 3.110e-67 Identity = 133/243 (54.73%), Postives = 161/243 (66.26%), Query Frame = 1
Query: 1 RGWEFRRIDGSSEIQERQKCIDEYNNRPT---LFVFLLSTRAGGLGINLCAADTVVLFDSDWNPHQDSQAMARCHRIGQKKPVMVYRLLTTGSVEIDMMEKQISKKKLERVTVQGGDFAKAGRRANGEMTVSHLRKLLEDDVEDLAKRATVSGAGDGVDRAITEEELDGILDRERVFASSTAQWGDSSATVNREWGRRGDGNDGAGWGERKEGRTGPVLPLPREGEMYDIVDELDASGLNAMA 720
R W + RIDG+S + +RQ ID +NN T LFVFLLSTRAGGLGINL AADTVV+FDSDWNPHQDSQA RCHRIGQ+ PV+VYRLLT SVEIDMMEKQISKKKLER+ V GGDF K G+R+ G +T LR LL DD+ +L +RA +GAG AI+EEEL+ +LDR+ +F GD + R G +G+T +P+EG MYD+VD S L+ MA
Sbjct: 390 RDWGYCRIDGTSALIDRQASIDAFNNGETNDDLFVFLLSTRAGGLGINLTAADTVVIFDSDWNPHQDSQAQDRCHRIGQQHPVVVYRLLTLSSVEIDMMEKQISKKKLERMAVAGGDFRKVGQRSRGALTSQALRGLLADDIANLQQRAA-AGAGSSAG-AISEEELEMVLDRQLIF-------GDDPVYLAR------------GGVPAPDGKT-----IPKEGHMYDVVDASIDSILDEMA 606
BLAST of mRNA_H-paniculata_contig16631.3750.1 vs. uniprot
Match: A0A7S2BZ69_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BZ69_9STRA) HSP 1 Score: 215 bits (547), Expect = 1.810e-65 Identity = 119/238 (50.00%), Postives = 154/238 (64.71%), Query Frame = 1
Query: 1 RGWEFRRIDGSSEIQERQKCIDEYNNRPTLFVFLLSTRAGGLGINLCAADTVVLFDSDWNPHQDSQAMARCHRIGQKKPVMVYRLLTTGSVEIDMMEKQISKKKLERVTVQGGDFAKAGRRA-NGEMTVSHLRKLLEDDVEDLAKRATVSGAGDGVDRAITEEELDGILDRERVFASSTAQWGDSSATVNREWGRRGDGNDGAGWGERKEGRTGPVLPLPREGEMYDIV--DELDASG 705
R W + RIDG+ +I ERQ+ +D +N +F F+LSTRAGGLGINL AADTV++FDSDWNPHQD+QA RCHRIGQ +PV+VYRLLT GSVEIDMMEKQ+SKKKLER+ V GG+FA+ G+R N ++TV LR LL DDV +L+ R T +G I E EL+ I+DR+R+F +W G +G K+ P+P EG+ YDI+ + D+ G
Sbjct: 95 REWRYCRIDGNVKIGERQQSMDAFNKEEDIFAFMLSTRAGGLGINLQAADTVIIFDSDWNPHQDAQAQDRCHRIGQTRPVVVYRLLTIGSVEIDMMEKQVSKKKLERMCVSGGNFARPGKRTGNTKITVDDLRNLLSDDVANLSGRGTADNKYEG----IGETELEMIMDRQRLFG---------------DWKADGFSTLASGVNSTKD-------PVPPEGQYYDIITASQQDSGG 306
BLAST of mRNA_H-paniculata_contig16631.3750.1 vs. uniprot
Match: A0A7S2NXS4_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2NXS4_9STRA) HSP 1 Score: 207 bits (527), Expect = 9.630e-64 Identity = 108/191 (56.54%), Postives = 133/191 (69.63%), Query Frame = 1
Query: 1 RGWEFRRIDGSSEIQERQKCIDEYNNRPT-------------LFVFLLSTRAGGLGINLCAADTVVLFDSDWNPHQDSQAMARCHRIGQKKPVMVYRLLTTGSVEIDMMEKQISKKKLERVTVQGGDFAKAGRRANGEMTVSHLRKLLEDDVEDLAKRATVSGAGDGVDRAITEEELDGILDRERVFASST 534
R W + RIDG+++I ERQ+ +D +N T FVFLLSTRAGGLGINL AADT ++FDSDWNPHQDSQAM RCHRIGQ PV VYRLLT GSV+I+MMEKQISKKKLER+ + GGDF KAGRR+ GE + L LL+DD++DL R GD I +E DGI++R+++F+ T
Sbjct: 4 RKWNYCRIDGTTKIDERQRQMDVFNAEKTGGADGKRNTSDDRTFVFLLSTRAGGLGINLTAADTCIIFDSDWNPHQDSQAMDRCHRIGQTNPVAVYRLLTAGSVDIEMMEKQISKKKLERMAITGGDFRKAGRRSKGEFSAKDLSTLLQDDIKDLQARG-----GDVEHVMIDGDEFDGIMNRKKLFSQGT 189
BLAST of mRNA_H-paniculata_contig16631.3750.1 vs. uniprot
Match: A0A7S0BX46_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0BX46_9STRA) HSP 1 Score: 210 bits (535), Expect = 5.710e-62 Identity = 112/187 (59.89%), Postives = 134/187 (71.66%), Query Frame = 1
Query: 1 RGWEFRRIDGSSEIQERQKCIDEYNNRPT-------------LFVFLLSTRAGGLGINLCAADTVVLFDSDWNPHQDSQAMARCHRIGQKKPVMVYRLLTTGSVEIDMMEKQISKKKLERVTVQGGDFAKAGRRANGEMTVSHLRKLLEDDVEDLAKRATVSGAGDGVDRAITEEELDGILDRERVF 522
R W++ RIDGS++I +RQK +D +N T +FVFLLSTRAGGLGINL AADT ++FDSDWNPHQDSQAM RCHRIGQ +PV VYRLLT GSV+I+MMEKQISKKKLER+ + GGDF KAG R+ G + L LLEDD+EDL +A G D AI E ELD ILDR+++F
Sbjct: 249 RRWKYCRIDGSTKIDDRQKQMDVFNAEKTSGADGGRNESDERMFVFLLSTRAGGLGINLTAADTCIIFDSDWNPHQDSQAMDRCHRIGQTRPVAVYRLLTAGSVDIEMMEKQISKKKLERMAIVGGDFRKAGARSKGAFSAKALSSLLEDDIEDLQAKA-----GGIEDIAIDEVELDQILDRKKLF 430
BLAST of mRNA_H-paniculata_contig16631.3750.1 vs. uniprot
Match: A0A7S2G339_9STRA (Hypothetical protein n=2 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2G339_9STRA) HSP 1 Score: 216 bits (551), Expect = 7.210e-62 Identity = 120/242 (49.59%), Postives = 153/242 (63.22%), Query Frame = 1
Query: 4 GWEFRRIDGSSEIQERQKCIDEYNNRPTLFVFLLSTRAGGLGINLCAADTVVLFDSDWNPHQDSQAMARCHRIGQKKPVMVYRLLTTGSVEIDMMEKQISKKKLERVTVQGGDFAKAGRRANGEMTVSHLRKLLEDDVEDLAKRATVSGAGDGVDRAITEEELDGILDRERVFASSTAQWGDSSATVNREWGRRGDGNDGAGWGERKEGRTGPVLPLPREGEMYDIV---DELDASGLNAMA 720
GW RIDGS +IQERQK +D +NN P +F+F+LSTRAGGLGINL AADTV++FDSDWNPHQD+QA RCHRIGQ +PV+VYRLLT GSVEIDMMEKQISKKKLER+ + GG+F++ G+R +M++ L+ LL DDV DL RA +G I+ EEL +LDR R+F DG++G +P EG YD++ D D L++M+
Sbjct: 568 GWRTCRIDGSIKIQERQKQMDAFNNDPDIFIFMLSTRAGGLGINLQAADTVIIFDSDWNPHQDAQAQDRCHRIGQTRPVVVYRLLTIGSVEIDMMEKQISKKKLERMAITGGNFSRPGQRNKTKMSLESLKALLADDVSDLQGRADAEDLTNG----ISNEELSLVLDRPRLFEL--------------------DGSEG----------------IPPEGAFYDVLKVSDTEDGGILSSMS 769
BLAST of mRNA_H-paniculata_contig16631.3750.1 vs. uniprot
Match: A0A6U1QEQ7_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A6U1QEQ7_9STRA) HSP 1 Score: 216 bits (549), Expect = 1.700e-61 Identity = 108/185 (58.38%), Postives = 136/185 (73.51%), Query Frame = 1
Query: 1 RGWEFRRIDGSSEIQERQKCIDEYNNRPTLFVFLLSTRAGGLGINLCAADTVVLFDSDWNPHQDSQAMARCHRIGQKKPVMVYRLLTTGSVEIDMMEKQISKKKLERVTVQGGDFAKAGRRANGE--MTVSHLRKLLEDDVEDLAKRATVSGAGDGVDRAITEEELDGILDRERVFASSTAQWGD 549
RGW + RIDGS + +RQ+ I+ +N+ P +F+FLLSTRAGGLGINL AADT +++DSDWNPHQDSQA RCHRIGQKKPVMVYR LT GSVEI+MMEK ISKKKLER+ + GGDF AGRR E M + L+KLLEDD++ LA+ + + + ++E EL+ ILDR +F+ Q GD
Sbjct: 589 RGWRYCRIDGSVNVFDRQEMIESFNSDPDVFIFLLSTRAGGLGINLAAADTCIIYDSDWNPHQDSQAQDRCHRIGQKKPVMVYRFLTGGSVEIEMMEKAISKKKLERMAIVGGDFHMAGRRRTSEAGMNIDRLQKLLEDDIDSLARMSKEENSAE-----MSETELNTILDRNLIFSEQCPQTGD 768
BLAST of mRNA_H-paniculata_contig16631.3750.1 vs. uniprot
Match: A0A835ZBT7_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZBT7_9STRA) HSP 1 Score: 209 bits (533), Expect = 1.430e-59 Identity = 119/238 (50.00%), Postives = 150/238 (63.03%), Query Frame = 1
Query: 1 RGWEFRRIDGSSEIQERQKCIDEYNN---RPTLFVFLLSTRAGGLGINLCAADTVVLFDSDWNPHQDSQAMARCHRIGQKKPVMVYRLLTTGSVEIDMMEKQISKKKLERVTVQGGDFAKAGRRANGEMTVSHLRKLLEDDVEDLAKRATVS------GAGDGVDRAITEEELDGILDRERVFASSTAQWGDSSATVNREWGRRGDGNDGAGWGERKEGRTGPVLPLPREGEMYDIVD 687
R W + RIDGSS + RQ ID +N L +FLLSTRAGGLGINL AADTV+L+DSDWNPHQD+QA RCHRIGQ+ PV+VYRLLT SVEI+MMEKQ+SKKKLER+ + GGDF K GRR+ G +T LR+LL D++ +L +RA A + AI+E+ELD I+DR+R+F GD + NR +G+ +P+EG MYD VD
Sbjct: 493 RRWGYCRIDGSSPLAGRQASIDAFNAGAMEEDLVIFLLSTRAGGLGINLAAADTVILYDSDWNPHQDTQAQDRCHRIGQQHPVVVYRLLTMASVEIEMMEKQMSKKKLERMAIAGGDFRKVGRRSRGALTPQALRRLLADEIANLRQRAEAGPETAAVNAQSTTEGAISEDELDVIMDRQRIF-------GDYAVYSNRSGVPPTEGD-----------------LIPKEGHMYDFVD 706
BLAST of mRNA_H-paniculata_contig16631.3750.1 vs. uniprot
Match: F0Y786_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y786_AURAN) HSP 1 Score: 207 bits (527), Expect = 1.330e-58 Identity = 108/179 (60.34%), Postives = 132/179 (73.74%), Query Frame = 1
Query: 1 RGWEFRRIDGSSEIQERQKCIDEYNNRPT----LFVFLLSTRAGGLGINLCAADTVVLFDSDWNPHQDSQAMARCHRIGQKKPVMVYRLLTTGSVEIDMMEKQISKKKLERVTVQGGDFAKAGRRANGEMTVSHLRKLLEDDVEDLAKRATVSGAGDGVDRAITEEELDGILDRERVFA 525
R W + RIDG E+ ERQ+ ID +N FVF+LSTRAGGLGINL ADTV+LFDSDWNPHQD+QAM R HRIGQK+ V+VYR LT+GS EI MMEKQISKKKLER+ VQGGD+ KAGRR+ GE+T LR LL DDV +A+R +G D I+E+ELD ++DR ++F+
Sbjct: 534 REWNYFRIDGGVELSERQRQIDAFNGEGQESNEYFVFMLSTRAGGLGINLATADTVILFDSDWNPHQDAQAMDRAHRIGQKRDVVVYRFLTSGSAEIGMMEKQISKKKLERMAVQGGDYNKAGRRSRGELTTDGLRSLLNDDVN-IAQRIGAAGDNATADE-ISEQELDLVMDRAKIFS 710 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig16631.3750.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig16631.3750.1 >prot_H-paniculata_contig16631.3750.1 ID=prot_H-paniculata_contig16631.3750.1|Name=mRNA_H-paniculata_contig16631.3750.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=174bp MARCHRIGQKKPVMVYRLLTTGSVEIDMMEKQISKKKLERVTVQGGDFAKback to top mRNA from alignment at H-paniculata_contig16631:1693..5423- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig16631.3750.1 ID=mRNA_H-paniculata_contig16631.3750.1|Name=mRNA_H-paniculata_contig16631.3750.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3731bp|location=Sequence derived from alignment at H-paniculata_contig16631:1693..5423- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig16631:1693..5423- >mRNA_H-paniculata_contig16631.3750.1 ID=mRNA_H-paniculata_contig16631.3750.1|Name=mRNA_H-paniculata_contig16631.3750.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1044bp|location=Sequence derived from alignment at H-paniculata_contig16631:1693..5423- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |