mRNA_H-paniculata_contig16444.3676.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig16444.3676.1 vs. uniprot
Match: D8LG55_ECTSI (Similar to Stromal cell-derived factor 2 (SDF-2) (Partial) (Fragment) n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LG55_ECTSI) HSP 1 Score: 230 bits (586), Expect = 8.470e-75 Identity = 106/152 (69.74%), Postives = 128/152 (84.21%), Query Frame = 1
Query: 19 VLGARCSVIGSGDQVMVTCGSVVKLRHEPTGYHLHSHPIKWGGGSGQQSVTSHGSEDDQGSMWIVKEADGAMPCEVGEPIECGAAIRLEHVATGKNLHSHSFSSPLSRQQEVSCFGESGEGDNGDSWELQCVRKGEKKWTRGAAVKLKHANT 474
+L A CSV G+G+ V+VTCGSV+KLRH+ T +HLHSH IKWGGGSGQQSVT HG EDDQGSMWIVKE DGA+PCEVG+P+ CG+ +RLEHV+TG+NLHSH+F SPL+R QEVS FG+SGEGD GDSWE+ CV KG + W R +V+LKH +T
Sbjct: 15 LLAAACSV-GAGE-VLVTCGSVIKLRHDTTRFHLHSHVIKWGGGSGQQSVTGHGGEDDQGSMWIVKEGDGALPCEVGQPVACGSVVRLEHVSTGRNLHSHNFKSPLTRGQEVSAFGDSGEGDAGDSWEVTCVHKGSETWARDESVRLKHVST 164
BLAST of mRNA_H-paniculata_contig16444.3676.1 vs. uniprot
Match: A0A4D9DC59_9STRA (Uncharacterized protein n=4 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9DC59_9STRA) HSP 1 Score: 179 bits (454), Expect = 4.850e-54 Identity = 87/147 (59.18%), Postives = 104/147 (70.75%), Query Frame = 1
Query: 40 VIGSGDQVMVTCGSVVKLRHEPTGYHLHSHPIKWGGGSGQQSVTSHGSEDDQGSMWIVKEADGAMPCEVGEPIECGAAIRLEHVATGKNLHSHSFSSPLSRQQEVSCFGESGEGDNGDSWELQCVRKGEKKWTRGAAVKLKHANTQR 480
V+ D +M T GSVVKL+H P+ Y LHSH I WG GSGQQSVT+HGS DD+G +W+V E D E G P+ CG AIRL H+ T KNLHSH FSSPLS QQEVSCFG+ G GD+GD+WE+ C+ G K W RG V+ KH +T R
Sbjct: 22 VLSLEDDIM-TFGSVVKLQHVPSKYFLHSHQISWGSGSGQQSVTAHGSADDRGGLWVVAEGDNDPFKEGGSPVACGTAIRLGHMETSKNLHSHFFSSPLSNQQEVSCFGDGGRGDSGDNWEVVCMAPGAKFWRRGDEVRFKHKDTGR 167
BLAST of mRNA_H-paniculata_contig16444.3676.1 vs. uniprot
Match: A0A812U349_SYMMI (Sdf2 protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812U349_SYMMI) HSP 1 Score: 175 bits (443), Expect = 1.880e-52 Identity = 89/152 (58.55%), Postives = 112/152 (73.68%), Query Frame = 1
Query: 19 VLGARCSVIGSGDQVMVTCGSVVKLRHEPTGYHLHSHPIKWGGGSGQQSVTSHGSEDDQGSMWIVKEADGAMPCEVGEPIECGAAIRLEHVATGKNLHSHSFSSPLSRQQEVSCFGESGEGDNGDSWELQCVRKGEKKWTRGAAVKLKHANT 474
VL + +I + DQV V+CGS VKL + + +HLHSH I +G GSGQQSVT+HGS DDQGS+W++ E +G+ CE G PI+CG+ IRL H++TGKNLHSH F SPLS EVS FGE+G GD GD+WE+QC RKG W RG V+LKH +T
Sbjct: 12 VLSSLLCLISAEDQV-VSCGSAVKLLNVQSNHHLHSHGIAYGSGSGQQSVTAHGSVDDQGSLWLLTEGEGSPLCEAGTPIKCGSRIRLRHMSTGKNLHSHMFKSPLSGNFEVSGFGENGHGDTGDNWEVQC-RKGPY-WLRGEHVQLKHVDT 160
BLAST of mRNA_H-paniculata_contig16444.3676.1 vs. uniprot
Match: A0A835YSR9_9STRA (MIR motif-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YSR9_9STRA) HSP 1 Score: 170 bits (430), Expect = 3.120e-51 Identity = 77/143 (53.85%), Postives = 99/143 (69.23%), Query Frame = 1
Query: 43 IGSGDQVMVTCGSVVKLRHEPTGYHLHSHPIKWGGGSGQQSVTSHGSEDDQGSMWIVKEADGAMPCEVGEPIECGAAIRLEHVATGKNLHSHSFSSPLSRQQEVSCFGESGEGDNGDSWELQCVRKGEKKWTRGAAVKLKHAN 471
+ +G V VTCGS VKL+H TGY LHSH ++WG GSGQQSVT++G+ DDQG ++IVKE +PCE G ++CG +RLEH+ T KNLH+H F SPL R QEVS FGE G+GD+GD+W ++CV W + V H N
Sbjct: 16 LAAGRDVEVTCGSTVKLQHVKTGYQLHSHQVRWGAGSGQQSVTANGAADDQGELFIVKEPHNGLPCEAGTVVKCGGIVRLEHMFTQKNLHTHRFVSPLLRLQEVSAFGEEGDGDSGDNWVVECVDPSSGSWLKDGKVSRLHLN 158
BLAST of mRNA_H-paniculata_contig16444.3676.1 vs. uniprot
Match: A0A7S3H152_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3H152_9STRA) HSP 1 Score: 166 bits (420), Expect = 8.570e-49 Identity = 79/141 (56.03%), Postives = 101/141 (71.63%), Query Frame = 1
Query: 55 DQVMVTCGSVVKLRHEPTGYHLHSHPIKWGGGSGQQSVTSHGSEDDQGSMWIVKEADGAMPCEVGEPIECGAAIRLEHVATGKNLHSHSFSSPLSRQQEVSCFG-ESGEGDNGDSWELQCVRKGEKKWTRGAAVKLKHANT 474
D VTCGSV+KL H+ TG +LHSH I WG GSGQQSVT++ ++D+GS+W+VKE A PCEVG+P++CG IRLEH+ T KNLHSH F +PLS QEVS FG E+G GD GD+W++ C + W R V +HA+T
Sbjct: 32 DNDPVTCGSVIKLIHKETGNNLHSHGIAWGSGSGQQSVTTNSVKNDKGSLWLVKEGFRAAPCEVGKPVQCGETIRLEHLDTRKNLHSHLFRAPLSGNQEVSAFGDENGNGDTGDNWQVHCDSSADAVWNRKKPVVFRHADT 172
BLAST of mRNA_H-paniculata_contig16444.3676.1 vs. uniprot
Match: A0A7R9U8V6_9STRA (Hypothetical protein n=2 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U8V6_9STRA) HSP 1 Score: 161 bits (408), Expect = 8.780e-47 Identity = 76/139 (54.68%), Postives = 97/139 (69.78%), Query Frame = 1
Query: 67 VTCGSVVKLRHEPTGYHLHSHPIKWGGGSGQQSVTSHGSEDDQGSMWIVKEADGAMPCEVGEPIECGAAIRLEHVATGKNLHSHSFSSPLSRQQEVSCFG-ESGEGDNGDSWELQCVRKGEKKWTRGAAVKLKHANTQR 480
+TCGS++ L H T Y LHSHPI WG GSGQQS+T+ GS+ DQ ++W+V+EA G C VGEPI CG +RL+H+ TGKNLHSH++ +PLS QEV+ FG E+GEGD+GD W + C W R V+LKH T R
Sbjct: 50 ITCGSLLTLVHSSTSYMLHSHPIAWGSGSGQQSITTSGSDRDQDNLWLVREASGKEACRVGEPIPCGGTVRLQHMKTGKNLHSHNYRAPLSGNQEVTGFGDETGEGDDGDDWRVLCGSNKSGYWRRSKDVRLKHDLTGR 188
BLAST of mRNA_H-paniculata_contig16444.3676.1 vs. uniprot
Match: A0A7S3DBZ2_9EUKA (Hypothetical protein n=1 Tax=Palpitomonas bilix TaxID=652834 RepID=A0A7S3DBZ2_9EUKA) HSP 1 Score: 157 bits (397), Expect = 1.560e-45 Identity = 75/143 (52.45%), Postives = 98/143 (68.53%), Query Frame = 1
Query: 55 DQVMVTCGSVVKLRHEPTGYHLHSHPIKWGGGSGQQSVTSHGSEDDQGSMWIVKEADGAMPCEVGEPIECGAAIRLEHVATGKNLHSHSFSSPLSRQQEVSCFGESGEGDNGDSWELQCVR-KGEKKWTRGAAVKLKHANTQR 480
D VTCGS +KL++ +G+ LHSH +KWG GSGQQSVTS GS+DD S+W+V G C G P++CG IRL H AT NLHSH F SPLS+QQEVS FG GEGD GD+W + C+ + W R +A++ +HA+T++
Sbjct: 24 DFSTVTCGSSIKLKNRASGFRLHSHDVKWGSGSGQQSVTSTGSKDDPNSLWVVHAKHGDPMCPRGTPVKCGDTIRLMHSATRANLHSHLFRSPLSQQQEVSAFGVEGEGDTGDNWIVDCLNAQPGSNWDRKSAIRFRHADTRK 166
BLAST of mRNA_H-paniculata_contig16444.3676.1 vs. uniprot
Match: M4BGB8_HYAAE (Uncharacterized protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BGB8_HYAAE) HSP 1 Score: 157 bits (398), Expect = 1.130e-44 Identity = 80/148 (54.05%), Postives = 99/148 (66.89%), Query Frame = 1
Query: 67 VTCGSVVKLRHEPTGYHLHSHPIKWGGGSGQQSVTSHGSEDDQGSMWIVKEADGAMPCEVGEPIECGAAIRLEHVATGKNLHSHSFSSPLSRQQ-EVSCFGESGEGDNGDSWELQCVRKGEKK-----------WTRGAAVKLKHANT 474
VTCGS +KL HEP+ Y LHSH I +G GSGQQSVT+H + +D S WIVKE DGA CE G+PIECG IRLEH+ T +NLHSH+F +PLS Q EVS +G +GEGD DSW ++C + W RGA V+L+H +T
Sbjct: 105 VTCGSSIKLVHEPSRYRLHSHDIAYGSGSGQQSVTTHMARNDVNSYWIVKEGDGAAVCEAGKPIECGTTIRLEHLQTRRNLHSHTFKAPLSSQHLEVSAYGVAGEGDGLDSWVVECQENQQCSAEAQCDDDDGLWKRGALVRLRHQST 252
BLAST of mRNA_H-paniculata_contig16444.3676.1 vs. uniprot
Match: A0A2G8LLR4_STIJA (Putative stromal cell-derived factor 2 n=1 Tax=Stichopus japonicus TaxID=307972 RepID=A0A2G8LLR4_STIJA) HSP 1 Score: 154 bits (390), Expect = 1.890e-44 Identity = 78/146 (53.42%), Postives = 97/146 (66.44%), Query Frame = 1
Query: 43 IGSGDQVMVTCGSVVKLRHEPTGYHLHSHPIKWGGGSGQQSVTSHGSEDDQGSMWIVKEADGAMPCEVGEPIECGAAIRLEHVATGKNLHSHSFSSPLSRQQEVSCFGESGEGDNGDSWELQCVRKGEKKWTRGAAVKLKHANTQR 480
+G+ D VTCGSV+KL + G LHSH IK+G GSGQQSVT+ G DQ S W VK C+ G P+ECG+ IRL HVAT +NLHSH F SPLS QEVSCFGE GEGD GD+W + C + +W R A++LKH +++
Sbjct: 32 VGAFDYEFVTCGSVIKLMNTRHGVRLHSHDIKYGSGSGQQSVTAVGDTTDQNSYWQVKGKTDTQ-CQRGTPVECGSTIRLLHVATRRNLHSHDFQSPLSHNQEVSCFGEDGEGDAGDNWVVVCSTQ---QWRRNDAIRLKHVVSEK 173
BLAST of mRNA_H-paniculata_contig16444.3676.1 vs. uniprot
Match: A0A7S1C1A8_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1C1A8_9STRA) HSP 1 Score: 156 bits (394), Expect = 1.900e-44 Identity = 79/143 (55.24%), Postives = 95/143 (66.43%), Query Frame = 1
Query: 67 VTCGSVVKLRHEPTGYHLHSHPIKWGGGSGQQSVTSHGSEDDQGSMWIVKEADG----AMPCEVGEPIECGAAIRLEHVATGKNLHSHSFSSPLSRQQEVSCFGESGEGDNGDSWELQC---VRKGEKKWTRGAAVKLKHANT 474
VTCGS +KL H TG LHSH + WG GSGQQSVT+ +DD S+W+VKEA G A PC G + CG+ +RLEH ATGKNLHSH ++P+SR QEVS FG+ G GD GD W+L C + W RG AV+LKHA T
Sbjct: 63 VTCGSAIKLTHASTGAVLHSHDLAWGSGSGQQSVTAVRWQDDGNSVWVVKEAHGEAQRAAPCRRGAAVACGSLLRLEHTATGKNLHSHFEAAPISRNQEVSAFGKGGSGDAGDDWQLLCDADAKGPNSVWLRGRAVRLKHAAT 205 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig16444.3676.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig16444.3676.1 >prot_H-paniculata_contig16444.3676.1 ID=prot_H-paniculata_contig16444.3676.1|Name=mRNA_H-paniculata_contig16444.3676.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=161bp MFLCVCVLGARCSVIGSGDQVMVTCGSVVKLRHEPTGYHLHSHPIKWGGGback to top mRNA from alignment at H-paniculata_contig16444:1128..3092- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig16444.3676.1 ID=mRNA_H-paniculata_contig16444.3676.1|Name=mRNA_H-paniculata_contig16444.3676.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1965bp|location=Sequence derived from alignment at H-paniculata_contig16444:1128..3092- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig16444:1128..3092- >mRNA_H-paniculata_contig16444.3676.1 ID=mRNA_H-paniculata_contig16444.3676.1|Name=mRNA_H-paniculata_contig16444.3676.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=966bp|location=Sequence derived from alignment at H-paniculata_contig16444:1128..3092- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |