mRNA_H-paniculata_contig1643.3669.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1643.3669.1
Unique NamemRNA_H-paniculata_contig1643.3669.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig1643.3669.1 vs. uniprot
Match: D7FTC4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTC4_ECTSI)

HSP 1 Score: 98.2 bits (243), Expect = 2.800e-22
Identity = 50/61 (81.97%), Postives = 53/61 (86.89%), Query Frame = 1 
Query:   13 QMLAETVAAVGFEQTVKCVVPLLAPLAADQEQVVRQHLGEQLDEIARLCKSMGKEAGYRLI 195
            +MLAETV AVGFEQTVK VVPLL PLA DQE VVRQHLGEQL+EIAR C+  GKEAGYRLI
Sbjct:   41 KMLAETVTAVGFEQTVKSVVPLLGPLAEDQELVVRQHLGEQLEEIARFCRLQGKEAGYRLI 101
[Close]
BLAST of mRNA_H-paniculata_contig1643.3669.1 vs. uniprot
Match: A0A6H5JCV5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCV5_9PHAE)

HSP 1 Score: 96.7 bits (239), Expect = 3.350e-22
Identity = 49/61 (80.33%), Postives = 52/61 (85.25%), Query Frame = 1 
Query:   13 QMLAETVAAVGFEQTVKCVVPLLAPLAADQEQVVRQHLGEQLDEIARLCKSMGKEAGYRLI 195
            +MLAET  AVGFEQTVK VVPLL PLA DQE VVRQHLGEQL+EIAR C+  GKEAGYRLI
Sbjct:   41 KMLAETATAVGFEQTVKSVVPLLGPLAEDQELVVRQHLGEQLEEIARFCRLQGKEAGYRLI 101
[Close]
BLAST of mRNA_H-paniculata_contig1643.3669.1 vs. uniprot
Match: A0A7S2XRP8_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2XRP8_9STRA)

HSP 1 Score: 53.5 bits (127), Expect = 1.490e-6
Identity = 29/67 (43.28%), Postives = 42/67 (62.69%), Query Frame = 1 
Query:   13 QMLAETVAAVGFEQTVKCVVPLLAPLAADQEQVVRQHLGEQLDEIARLC-----KSMGKEAGYRLII 198
            +MLAET ++VG   T++ +VPLL PL AD E ++RQHL  QL  +A  C     K    E GY++++
Sbjct:   65 KMLAETSSSVGTNATLRTLVPLLPPLVADPESIIRQHLATQLLPMALTCMYVDEKQNYNERGYQVVM 131
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1643.3669.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FTC4_ECTSI2.800e-2281.97Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JCV5_9PHAE3.350e-2280.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S2XRP8_9STRA1.490e-643.28Hypothetical protein n=1 Tax=Attheya septentrional... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1643contigH-paniculata_contig1643:2734..4258 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score97.4
Seed ortholog evalue2.6e-18
Seed eggNOG ortholog2880.D7FTC4
Preferred namePPP4R1
KEGG koko:K15424,ko:K15426
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0005575,GO:0005622,GO:0005623,GO:0006464,GO:0006468,GO:0006793,GO:0006796,GO:0006807,GO:0007154,GO:0007165,GO:0008150,GO:0008152,GO:0008287,GO:0009987,GO:0010921,GO:0016310,GO:0019208,GO:0019220,GO:0019222,GO:0019538,GO:0019888,GO:0023052,GO:0030234,GO:0030289,GO:0031323,GO:0031399,GO:0032268,GO:0032991,GO:0035303,GO:0035304,GO:0036211,GO:0043170,GO:0043412,GO:0043666,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044464,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051171,GO:0051174,GO:0051246,GO:0051336,GO:0051716,GO:0060255,GO:0065007,GO:0065009,GO:0071704,GO:0080090,GO:0098772,GO:1901564,GO:1902494,GO:1903293
EggNOG free text desc.meiotic spindle elongation
EggNOG OGsKOG0211@1,KOG0211@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01009,ko03400
Exons2
Model size213
Cds size198
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1643.3669.1prot_H-paniculata_contig1643.3669.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1643 2749..4258 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929311.321352-UTR-H-paniculata_contig1643:2733..27481622929311.321352-UTR-H-paniculata_contig1643:2733..2748Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1643 2734..2748 +
1691480810.2864141-UTR-H-paniculata_contig1643:2733..27481691480810.2864141-UTR-H-paniculata_contig1643:2733..2748Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1643 2734..2748 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929311.3344474-CDS-H-paniculata_contig1643:2748..28291622929311.3344474-CDS-H-paniculata_contig1643:2748..2829Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1643 2749..2829 +
1691480810.2965798-CDS-H-paniculata_contig1643:2748..28291691480810.2965798-CDS-H-paniculata_contig1643:2748..2829Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1643 2749..2829 +
1622929311.349282-CDS-H-paniculata_contig1643:4141..42581622929311.349282-CDS-H-paniculata_contig1643:4141..4258Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1643 4142..4258 +
1691480810.3100967-CDS-H-paniculata_contig1643:4141..42581691480810.3100967-CDS-H-paniculata_contig1643:4141..4258Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1643 4142..4258 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1643.3669.1

>prot_H-paniculata_contig1643.3669.1 ID=prot_H-paniculata_contig1643.3669.1|Name=mRNA_H-paniculata_contig1643.3669.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=66bp
MLAETVAAVGFEQTVKCVVPLLAPLAADQEQVVRQHLGEQLDEIARLCKS
MGKEAGYRLIIEASK*
back to top

mRNA from alignment at H-paniculata_contig1643:2734..4258+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1643.3669.1 ID=mRNA_H-paniculata_contig1643.3669.1|Name=mRNA_H-paniculata_contig1643.3669.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1525bp|location=Sequence derived from alignment at H-paniculata_contig1643:2734..4258+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATCGTCGTAACCCAGATGTTGGCGGAGACGGTGGCCGCGGTTGGATTCGA
GCAGACGGTGAAATGCGTTGTGCCCTTGCTCGCTCCTCTTGCGGCGGTGA
GTTGTTCGTTGCCACCCGACGATTGCATTTAAGCAGCCCCGTCGGGCTGA
GGTCATATCCTGCAGTGTGACCTTTTCGGTGCTTTGGACACGTCGTACGC
AATAGTGTCATCTTCGCTGTCGAGTTCCGTGCTTGCGATCAGAAGGGTAT
TTGTCCCAGACCAAAGGGGGGCAAAAAGGCTGCATCTGTGCCTCGGAAAT
CTACGCAATAGCAATAGAAGGATCTGTTCAGTGGGACACTAGCTTCAGTA
TATATGATCTGCTCTGATCTACTCTGATCTGTCCCACGGAAAATGTGAGC
CGCTTGGCGTAAGAGTCGAATAATCTGAGCTATTCACAAGTGGGACATGT
TCAGCAGAGTCGGAACACGGAACACTCGGATTCCGTCCAATCCCAGCTTC
CGTTTTTTGCCAAATAACCTACTTTGGATTGAACGCGGGCGAGACGCTCC
TCCAGCGACTCCGAACGTGAATCTCGCCCGATTTCGTAATCCTCAGGAAA
CTAACCGGTTTTTTCATGCATGTGTAAAGGCAAGATTCGTGTGCAGAGCT
TCACGCCTTGTTCCTGGAATCGTTTTTGTCGCCGTGACGCGGAACGTGGT
CCCTATGGTTTCTAGGATTGCAGACCAGCCCTCTGTGAGAACTAAAGATC
GATCAGTTGTTTGTCGGTATTATAGCCCTCAGTTGGCATTAGAGTATGCC
CTACCATTATTTTCTTGAATTATTCATACGCTCAATTGGCAGGTAGAGCG
TGGCCTGTCACTCGCGTTTCAGGGTACCAGCGCTCATTTTACATTGGAGC
ATGCCCCAAATTTTTGTATTGGGTTGCACACGCGCGGTCTTGTCGTTGAT
ACTTGTCGATACACAGTAGTACTAGAAGCGCTGTCGTGGTGGGACTACCC
TTCGGTTTATGATACAGAACGTGCTCTGCAGTTGTCACTATTTATCAAAA
GCTGTCAACCGGAGGATATTGCTGACTACCCTACGGCGCTTAAGGGGCAA
TGGTGGCACCACGACTGTGGTCCTTAGTGTCTATTTCCCAGCGATTTCTG
TTGATGGGTCTAGTTCGTTATTTGTGCTGTCGACCAGTATTATAGGGGTT
GGTATCTTCAATCTTTACTGTAGCAGTTCTCCGTATTGCAGGGGCTTGGT
CCAACAGTCAACACATTCACCATGGCGGAGAATGACACATGTGCACATCC
GTGTAAAGCAGGGCACATAGTCTGTGCTAATTTCAATGGTATGCAGCCCA
TCAAAATTTGAGTTTTTGATATGTTTTTGTCGCTCCGGCTTGCAACGGCA
CACGTCAGGACCAAGAACAAGTGGTGCGCCAACATCTGGGCGAGCAGCTA
GACGAGATCGCGAGGCTGTGCAAATCTATGGGAAAGGAAGCGGGCTATCG
GCTCATCATAGAGGCGAGTAAATAA
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig1643:2734..4258+

>mRNA_H-paniculata_contig1643.3669.1 ID=mRNA_H-paniculata_contig1643.3669.1|Name=mRNA_H-paniculata_contig1643.3669.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=396bp|location=Sequence derived from alignment at H-paniculata_contig1643:2734..4258+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTTGGCGGAGACGGTGGCCGCGGTTGGATTCGAGCAGACGGTGAAATG
CGTTGTGCCCTTGCTCGCTCCTCTTGCGGCGATGTTGGCGGAGACGGTGG
CCGCGGTTGGATTCGAGCAGACGGTGAAATGCGTTGTGCCCTTGCTCGCT
CCTCTTGCGGCGGACCAAGAACAAGTGGTGCGCCAACATCTGGGCGAGCA
GCTAGACGAGATCGCGAGGCTGTGCAAATCTATGGGAAAGGAAGCGGGCT
ATCGGCTCATCATAGAGGCGAGTAAATAAGACCAAGAACAAGTGGTGCGC
CAACATCTGGGCGAGCAGCTAGACGAGATCGCGAGGCTGTGCAAATCTAT
GGGAAAGGAAGCGGGCTATCGGCTCATCATAGAGGCGAGTAAATAA
back to top