mRNA_H-paniculata_contig1630.3614.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig1630.3614.1 vs. uniprot
Match: D8LJ07_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJ07_ECTSI) HSP 1 Score: 286 bits (731), Expect = 1.120e-91 Identity = 190/321 (59.19%), Postives = 222/321 (69.16%), Query Frame = 1
Query: 1 MSSRNRLRVATGITNIGGTAXXXXXXXXKRPGTASIQLTARLS-RRDDMLHGSASTPALAQTSTSEE------IRGSARPLPPLDDWGSGSA-RPSTTPGAFGRHASLNVTGAEVGARRDGRDDWTKKFVP-------EASSV-DNGLSSIPLGLHKMGRDDLEVYVDIVRNSLARKVGKSQAASRANSRVPIVEQVNSIPQVGTQSEFRALIQAQNIPHPSYDIDGDGVVSQEDYALAKRFXXXXXXXXXXAEKVVGRRIMAEMFLENHTEDLHLYGQGLAQNSVADNVENISRSRGFKKIINGLREKEKKFTNHGSADV 915
MS R LRV+ G+TN + + G AS QLTARLS R L GSASTPAL +++ + + + G PLPPL WG + RP TT GA+GR +S N E+GA +GR F P EA+ + D+ + IPLGL K+ R+DLEVYV+IVR +LAR+ K QAAS + V QVN+IPQV TQS+FRALI+AQNIPHPSYDIDGDGVVSQEDYALAKRFXXXXXXXXXXAEKVVGRRIM E+FL+NH DLHLYGQGLAQ S+A NVE+ISRSRGFKKII GLREKEK F NHGS V
Sbjct: 1 MSGRRTLRVSQGVTNAAAASRSQ-----RSHGIASAQLTARLSGRMGGALLGSASTPALGRSAHNHQSIHVPNLEGGDNPLPPLGGWGGATPPRPRTTAGAYGRPSSSNP---EIGAGENGR-----LFTPPNGGGGGEANGLLDDRGADIPLGLSKLDREDLEVYVNIVRANLARQAKKEQAASASLVDDETV-QVNNIPQVATQSDFRALIKAQNIPHPSYDIDGDGVVSQEDYALAKRFXXXXXXXXXXAEKVVGRRIMTEVFLDNHKHDLHLYGQGLAQKSIAANVEDISRSRGFKKIIGGLREKEKNFVNHGSDGV 307
BLAST of mRNA_H-paniculata_contig1630.3614.1 vs. uniprot
Match: A0A7S1U1N7_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U1N7_9STRA) HSP 1 Score: 103 bits (258), Expect = 9.350e-22 Identity = 56/127 (44.09%), Postives = 72/127 (56.69%), Query Frame = 1
Query: 538 QVNSIPQVGTQSEFRALIQAQNIPHPSYDIDGDGVVSQEDYALAKRFXXXXXXXXXXAEKVVGRRIMAEMFLENHTEDLHLYGQGLAQNSVADNVENISRSRGFKKIINGLREKEKKFTNHGSADVR 918
+VN++ Q G+ E + NIPH SYDIDGDG VSQED LAKRF E+ VG+RI+AE F H ED+HLYG SV +NV+ ++R+ F K + L EK F GS V+
Sbjct: 153 EVNNLIQSGSYHELAERRKMLNIPHASYDIDGDGFVSQEDLFLAKRFDLDGNGVLDPDEREVGKRILAEEFFNRHAEDIHLYGDEYEGKSVKENVKALARNVNFFKTMTNLHNMEKTFNERGSMQVK 279
BLAST of mRNA_H-paniculata_contig1630.3614.1 vs. uniprot
Match: F0XYW8_AURAN (Cytochrome b5 heme-binding domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0XYW8_AURAN) HSP 1 Score: 88.6 bits (218), Expect = 3.560e-16 Identity = 47/128 (36.72%), Postives = 71/128 (55.47%), Query Frame = 1
Query: 544 NSIPQVGTQSEFRALIQAQNIPHPSYDIDGDGVVSQEDYALAKRFXXXXXXXXXXAEKVVGRRIMAEMFLENHTEDLHLYG-QGLAQNSVA---DNVENISRSRGFKKIINGLREKEKKFTNHGSADV 915
N++P+ T+SEF+ ++ N+PH SYD+DGDG VS +DY ++K ++ GR+ +A F NH D HLYG Q A+ A +N E ++ + F + L KEK+ NHGS D+
Sbjct: 189 NNMPRSRTRSEFKKKLRGVNVPHWSYDLDGDGEVSHDDYKISKALDALGTGQLSPVQRTRGRKTLASQFFRNHQRDAHLYGSQWTARPGSAAAEENAERLATNPSFNYSLCKLNMKEKRLINHGSYDM 316 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1630.3614.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig1630.3614.1 >prot_H-paniculata_contig1630.3614.1 ID=prot_H-paniculata_contig1630.3614.1|Name=mRNA_H-paniculata_contig1630.3614.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=307bp MSSRNRLRVATGITNIGGTAAAAQQQQQKRPGTASIQLTARLSRRDDMLHback to top mRNA from alignment at H-paniculata_contig1630:17836..23653+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig1630.3614.1 ID=mRNA_H-paniculata_contig1630.3614.1|Name=mRNA_H-paniculata_contig1630.3614.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=5818bp|location=Sequence derived from alignment at H-paniculata_contig1630:17836..23653+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig1630:17836..23653+ >mRNA_H-paniculata_contig1630.3614.1 ID=mRNA_H-paniculata_contig1630.3614.1|Name=mRNA_H-paniculata_contig1630.3614.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1842bp|location=Sequence derived from alignment at H-paniculata_contig1630:17836..23653+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |