mRNA_H-paniculata_contig16256.3597.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig16256.3597.1
Unique NamemRNA_H-paniculata_contig16256.3597.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig16256.3597.1 vs. uniprot
Match: A0A6H5JHV2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHV2_9PHAE)

HSP 1 Score: 221 bits (562), Expect = 2.520e-67
Identity = 136/228 (59.65%), Postives = 167/228 (73.25%), Query Frame = 1 
Query:    1 RELRRRRQEAYRRDLNMQIVEDAGRREWEVKRLQQLDQQHELKS-ATYNPWGKPGSGAPLRHLNGELVTNVKAYHRAKQQGLIAHDLSPNEIRDDEKPFGFTLTDTE-----DGRKQWSLPPRTSRSSG-ARVGFTSLSTNQTRDSES-SLSPPRSRYRFDRLPPEEQYDLDRRRKGRQELQVALLEQVEEKRARIAREAAAKQAEDEVDRINVLKALAYERAVSRGR 660
            RE RR RQEAYRR+L+ QI +   RRE   ++L++L+++HEL+S ATYNPWGKPGSGAPLR  +G LVTNVKAY+RAKQ+GLIA DLSPNEI D+E+PFG+TLT        +G  +   P RTSRS+  A  G       ++ D+ + SLSPPR+RYRFDRLPPEEQ  LDRR K RQEL+ ALL QVEEKRA+   E AAKQAED+ +R  VL+ LA ERA +R R
Sbjct:   25 REQRRARQEAYRRELSSQIADTEARRELHARKLRELEERHELQSVATYNPWGKPGSGAPLRQADGALVTNVKAYYRAKQRGLIAQDLSPNEIGDNEQPFGYTLTTKSKMQRFNGIPEDRSPLRTSRSAACAATGKVGEQGPRSIDAVTVSLSPPRNRYRFDRLPPEEQSYLDRRMKERQELEAALLSQVEEKRAKRELERAAKQAEDKEERARVLRVLAEERAANRHR 252
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BLAST of mRNA_H-paniculata_contig16256.3597.1 vs. uniprot
Match: D8LGW5_ECTSI (Similar to centrosome spindle pole associated protein 1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGW5_ECTSI)

HSP 1 Score: 192 bits (489), Expect = 2.600e-56
Identity = 126/225 (56.00%), Postives = 146/225 (64.89%), Query Frame = 1 
Query:    1 RELRRRRQEAYRRDLNMQIVEDAGRREWEVKRLQQLDQQHELKSATYNPWGKPGSGAPLRHLNGELVTNVKAYHRAKQQGLIAHDLSPNEIRDDEKPFGFTLTDTEDGRKQWSLPPRTSRSSGA----RVGFTSLSTNQTRDSES-SLSPPRSRYRFDRLPPEEQYDLDRRRKGRQELQVALLEQVEEKRARIAREAAAKQAEDEVDRINVLKALAYERAVSRGR 660
            RE RR RQEAYRR+L+ QI +   RRE   +        HEL+SATYNPWGKPGSGAPLR  +G LVTNVKAYHRAKQ+GLIA DLSPNEI D+E+PFG+TLT       +   P RTSRS+      RVG   L   ++ D+ + SLSPPR+RYRFDRLPPEEQ  LDRR K RQEL+ ALL QVEEKR                    VL+ LA ERA +R R
Sbjct:   25 REQRRARQEAYRRELSSQIADMEARRELHARXXXXXXXXHELQSATYNPWGKPGSGAPLRQADGALVTNVKAYHRAKQRGLIAQDLSPNEIGDNEQPFGYTLTTKSIPEDR--SPLRTSRSAACAATGRVGEQGL---RSIDAVTVSLSPPRNRYRFDRLPPEEQSYLDRRIKERQELEAALLSQVEEKRXXXXXXXXXXXXXXXXXXXRVLRVLAEERAANRHR 244
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig16256.3597.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JHV2_9PHAE2.520e-6759.65Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LGW5_ECTSI2.600e-5656.00Similar to centrosome spindle pole associated prot... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig16256contigH-paniculata_contig16256:196..3353 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionsimilar to centrosome spindle pole associated protein 1
Ec32 orthologEc-28_001500.1
Exons5
Model size678
Cds size678
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig16256.3597.1prot_H-paniculata_contig16256.3597.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig16256 196..3353 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929297.7800317-CDS-H-paniculata_contig16256:195..3511622929297.7800317-CDS-H-paniculata_contig16256:195..351Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16256 196..351 -
1691480805.5238848-CDS-H-paniculata_contig16256:195..3511691480805.5238848-CDS-H-paniculata_contig16256:195..351Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16256 196..351 -
1622929297.7927034-CDS-H-paniculata_contig16256:624..8271622929297.7927034-CDS-H-paniculata_contig16256:624..827Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16256 625..827 -
1691480805.540944-CDS-H-paniculata_contig16256:624..8271691480805.540944-CDS-H-paniculata_contig16256:624..827Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16256 625..827 -
1622929297.809128-CDS-H-paniculata_contig16256:2400..25071622929297.809128-CDS-H-paniculata_contig16256:2400..2507Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16256 2401..2507 -
1691480805.552076-CDS-H-paniculata_contig16256:2400..25071691480805.552076-CDS-H-paniculata_contig16256:2400..2507Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16256 2401..2507 -
1622929297.8266337-CDS-H-paniculata_contig16256:2807..28871622929297.8266337-CDS-H-paniculata_contig16256:2807..2887Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16256 2808..2887 -
1691480805.5616703-CDS-H-paniculata_contig16256:2807..28871691480805.5616703-CDS-H-paniculata_contig16256:2807..2887Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16256 2808..2887 -
1622929297.8439183-CDS-H-paniculata_contig16256:3221..33531622929297.8439183-CDS-H-paniculata_contig16256:3221..3353Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16256 3222..3353 -
1691480805.570522-CDS-H-paniculata_contig16256:3221..33531691480805.570522-CDS-H-paniculata_contig16256:3221..3353Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16256 3222..3353 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig16256.3597.1

>prot_H-paniculata_contig16256.3597.1 ID=prot_H-paniculata_contig16256.3597.1|Name=mRNA_H-paniculata_contig16256.3597.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=226bp
RELRRRRQEAYRRDLNMQIVEDAGRREWEVKRLQQLDQQHELKSATYNPW
GKPGSGAPLRHLNGELVTNVKAYHRAKQQGLIAHDLSPNEIRDDEKPFGF
TLTDTEDGRKQWSLPPRTSRSSGARVGFTSLSTNQTRDSESSLSPPRSRY
RFDRLPPEEQYDLDRRRKGRQELQVALLEQVEEKRARIAREAAAKQAEDE
VDRINVLKALAYERAVSRGRYDQVQ*
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mRNA from alignment at H-paniculata_contig16256:196..3353-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig16256.3597.1 ID=mRNA_H-paniculata_contig16256.3597.1|Name=mRNA_H-paniculata_contig16256.3597.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3158bp|location=Sequence derived from alignment at H-paniculata_contig16256:196..3353- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGAGAGTTGCGGCGCAGGCGGCAAGAGGCTTACCGGCGGGACCTTAACAT
GCAGATCGTCGAGGACGCAGGGAGAAGGGAGTGGGAAGTCAAGAGGCTGC
AGCAACTGGACCAACAGCATGAACTAAAGTCGGTGAGAGCTCCGAGAATG
ACCGTGATGATTGCTGGTATTCGCGGCGGGTTGAGGATAATGAGAACGGT
ATTTGAGTTTGAACAAGCGGTTGAGGCATTGAAATTGCAAACTGCATTAG
GATAATTGGGGCTAGCTACCTGTTCGGGTGCACAACTCTTTGCTGTGAGT
TACGCCATGATAGATGCCCCCAAATTCGTTGTATAGGCCTACTATAAAAA
CAAGATAGCCTTTATTTATTCGAGTGTGCTCCAAGATGGCATCAGAATAG
TTCCAACGTTGCTCCCACAACATGACAATCCGTACGACGTGTGCCGTAAT
TCTTACTTTCGCAAAGGCGACCTATAACCCTTGGGGGAAACCCGGCTCTG
GAGCACCCCTTCGCCATCTCAACGGTGAACTGGTCACTAATGTCAAGTAA
GTAGAGAGAGTCCAAACTACCTACCGATGTTGCGCTAGACAAAAAACGTC
ATTACAGTAAGACCGCAAATACCATATTTTATTTGTTACAAGCACAGCGA
TAGTTAGGGTCGGTGTATAGTCTGATGTGAAGGAATTGTGTACGGGCTGG
CGTTTCATGTTTTTCTTCCTCTTGAAGTGTATTATTTGACCTCTGCCAAG
GTGCTGTAATTGAAAATGATATGTATCTAGCACGTAGGATATACATGTCC
ACAATTTTACTTCTGTTGATATCCCACCTTCCCGCCATGCTTGCAGGGCA
TATCATCGCGCCAAGCAGCAGGGGTTGATTGCCCACGACCTTTCGCCAAA
CGAGATTCGAGACGATGAAAAGCCGTTCGGATTCACGCTCACAGACACCG
AAGGTACCACTAAAACGATGAGAATATACTTATATAGCTCTAAAGTTTTT
ATAGAAAATATTTCCACGACCCACCGAAAAGAAATACCCTGCTGAAAAAT
CGATAGTTTTCCCTCTTCATTTACCATTTTCCTATCGAGAACTGACATTC
AAATAAAAATAACCCAACAGAAGAAAAATGGCGAGAATATGAAACGCTTC
GAAGAGATAGTTGTTCTTGCTTCGGACCAGGCAAGACATGGTGTGTTTGG
TGTGTAAGGGGCTAAGGCAAGAAAGCATCGAGCAAGTAGGGCGAGGAGGG
CACTGACGTTCTGGCTCCCAATGATCGCAATTTGATCAACCGTGATAAGG
ATGTCCTGGGGTTTAGGCGGAGGGCGGACGAAGGGGGTGCATCCATTAGA
AAAGTATGCTATATACTGTTTTATGCAATTATGTCCCTTGTTGTGTGGAC
TCTGCTTAGTGGACTATTGCAGGGGACTTGACGCGATGGCAGTATATATA
AGGTGAAACCCAAGCGTATACGAATACCGTATTCCTACCCTGCGCCCAAC
GAGAATTATTAGTTACGAATTTCGGCCCAATCCTGGCGACATAACGGCCG
GAGCCTCATCCAAATCACGCATTTCGTTAGGGTGGTTTTCTACTTCTTCA
CGAACCCGGCTCGATTAGAAGAAACGCTTATATTGGCCCAGCTTCAGTTT
CATATTTTTTGCACACTTTTAGCGGTTATCTTTATCTCGCAGATCTGCTT
TGGTGAGGGATTTTAACAGCTTCGCTTTCCTATTTCCTACTTTTGATGTT
TTAGGGTTGACAATGTGTTTTTGAATAATGTCGTGTCTTTGTTGACGTGT
AAATTCAGCACCGAGTATATTTCATTCGTAGTATTTTCGCCTTGGACGAC
GATCATGGAGAAATATTTGAGGTGTATTTACAAGTAAATTGTATCCATGG
TCGGTCATCGTTTCATGTGCTACACTGTACAAATGCAAGCAAATGTGTGG
CACTTAACTTCTTCAAGCATCATAACACTTTGGTGTAACAAGGAGTTTAT
CTGAACTGCGGTAAATTCCATTTGAATTTGCCAACGAGTAAACCAGAACA
GGATACGCTCTATCTTGGTATTTGTGATCAACTGCACGCCGCCTACCTGC
TAGAAAGTTTTTAATATGCCTCGTGGAGGAGCAGTATTATGTTTAGTATT
TGCCAGCGATCTGTAGTTTGGGCCGTTTACTATCTTATGGAAGAATTTTA
GCCCCATTTTTCCAATCCTTTATTTTTGTTATATACACCCAAGATTATTG
TGACATATATTTCTTAGTAGTGGGCCGGATCTGCACAACTATATCCAGGC
TCTGCCATGCTGCTGGTAGCACCAATCATCAAACGCTCGCAAAACTCAAT
CCCGCCCAGTGAGCTATTGGCAGAACGACTGAGACCTATTGCGAGCATGC
CTTGTCCACGCAGACCTTCCGTTCTGAAATTAATTGACCCTGAGAATGAA
TATTTCTTCGTTGCCGATGTTTTTTCTTTGTAATCCTCGTGCCTCGTGCC
TCGTGCCCTCTCTGCCATTCTTCTAGACGGTCGAAAGCAATGGTCATTAC
CACCTCGTACAAGCCGAAGCTCTGGCGCGAGAGTTGGGTTCACTAGTTTG
AGTACCAACCAGACAAGGGATTCGGAGTCGTCCTTATCTCCTCCGAGAAG
TCGGTACCGATTCGACCGACTTCCACCAGAGGAGCAGTATGATCTCGACC
GCCGAAGGAAGGGGCGACAGGAATTGCAGGTGAACTGACACGCGGGTACG
AGCAGGATTTCAAATGAGGTATTGAACATACTTGACCTGAATCGGTAGCA
TGGTTGGCTTGTTCTACTGTGTAGGGAACACATACGTTGCATGGCCTGGG
CCACTGCGGGACAAACCATCGTTAACCAGCTCAAATGCGTGGGCTAGTAA
ACAACTGCTCTCTGGTTGGTGAGAACATATTGCGGTCCAAGTGAGAACAC
GCTATGTCCAGGCCGGGCACACGTTCGTCACATCGTATATGCGTACATGC
AGGTTGCACTGTTGGAGCAAGTTGAGGAAAAAAGAGCCCGGATAGCTCGA
GAGGCCGCAGCTAAGCAGGCAGAAGACGAAGTTGACCGTATAAATGTGCT
CAAAGCTCTCGCGTATGAGCGTGCGGTATCTCGTGGGAGGTACGATCAGG
TACAATAG
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Coding sequence (CDS) from alignment at H-paniculata_contig16256:196..3353-

>mRNA_H-paniculata_contig16256.3597.1 ID=mRNA_H-paniculata_contig16256.3597.1|Name=mRNA_H-paniculata_contig16256.3597.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1356bp|location=Sequence derived from alignment at H-paniculata_contig16256:196..3353- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGAGAGTTGCGGCGCAGGCGGCAAGAGGCTTACCGGCGGGACCTTAACAT
GCAGATCGTCGAGGACGCAGGGAGAAGGGAGTGGGAAGTCAAGAGGCTGC
AGCAACTGGACCAACAGCATGAACTAAAGTCGCGAGAGTTGCGGCGCAGG
CGGCAAGAGGCTTACCGGCGGGACCTTAACATGCAGATCGTCGAGGACGC
AGGGAGAAGGGAGTGGGAAGTCAAGAGGCTGCAGCAACTGGACCAACAGC
ATGAACTAAAGTCGGCGACCTATAACCCTTGGGGGAAACCCGGCTCTGGA
GCACCCCTTCGCCATCTCAACGGTGAACTGGTCACTAATGTCAAGCGACC
TATAACCCTTGGGGGAAACCCGGCTCTGGAGCACCCCTTCGCCATCTCAA
CGGTGAACTGGTCACTAATGTCAAGGCATATCATCGCGCCAAGCAGCAGG
GGTTGATTGCCCACGACCTTTCGCCAAACGAGATTCGAGACGATGAAAAG
CCGTTCGGATTCACGCTCACAGACACCGAAGGGCATATCATCGCGCCAAG
CAGCAGGGGTTGATTGCCCACGACCTTTCGCCAAACGAGATTCGAGACGA
TGAAAAGCCGTTCGGATTCACGCTCACAGACACCGAAGACGGTCGAAAGC
AATGGTCATTACCACCTCGTACAAGCCGAAGCTCTGGCGCGAGAGTTGGG
TTCACTAGTTTGAGTACCAACCAGACAAGGGATTCGGAGTCGTCCTTATC
TCCTCCGAGAAGTCGGTACCGATTCGACCGACTTCCACCAGAGGAGCAGT
ATGATCTCGACCGCCGAAGGAAGGGGCGACAGGAATTGCAGACGGTCGAA
AGCAATGGTCATTACCACCTCGTACAAGCCGAAGCTCTGGCGCGAGAGTT
GGGTTCACTAGTTTGAGTACCAACCAGACAAGGGATTCGGAGTCGTCCTT
ATCTCCTCCGAGAAGTCGGTACCGATTCGACCGACTTCCACCAGAGGAGC
AGTATGATCTCGACCGCCGAAGGAAGGGGCGACAGGAATTGCAGGTTGCA
CTGTTGGAGCAAGTTGAGGAAAAAAGAGCCCGGATAGCTCGAGAGGCCGC
AGCTAAGCAGGCAGAAGACGAAGTTGACCGTATAAATGTGCTCAAAGCTC
TCGCGTATGAGCGTGCGGTATCTCGTGGGAGGTACGATCAGGTACAATAG
GTTGCACTGTTGGAGCAAGTTGAGGAAAAAAGAGCCCGGATAGCTCGAGA
GGCCGCAGCTAAGCAGGCAGAAGACGAAGTTGACCGTATAAATGTGCTCA
AAGCTCTCGCGTATGAGCGTGCGGTATCTCGTGGGAGGTACGATCAGGTA
CAATAG
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