mRNA_H-paniculata_contig16251.3594.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig16251.3594.1
Unique NamemRNA_H-paniculata_contig16251.3594.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig16251.3594.1 vs. uniprot
Match: UPI001E1BCD31 (secreted RxLR effector protein 161-like n=1 Tax=Daphnia magna TaxID=35525 RepID=UPI001E1BCD31)

HSP 1 Score: 70.5 bits (171), Expect = 1.730e-11
Identity = 36/89 (40.45%), Postives = 56/89 (62.92%), Query Frame = 1
Query:  232 PKSSEEAEEMPAFPYRKSVGTLRWAATTTRAEIAHDVRTTAKFCENPGVAHKRAV--VLQYLLRTANLGITYGGQDCGVEMLAYADSDY 492
            P+  +E EEM   PY+++VG L + +TTTR +I++ V   AKF +NPG+ H +AV  +++Y+  T   GI Y  Q+ G  +  Y D+DY
Sbjct:   23 PQQQKEKEEMKNIPYKEAVGALLYLSTTTRPDISYAVGQVAKFSQNPGIQHWKAVKRIIRYIAGTRTYGILYS-QEKGEMVTGYTDADY 110          
BLAST of mRNA_H-paniculata_contig16251.3594.1 vs. uniprot
Match: A0A8J2RPB7_9CRUS (Hypothetical protein n=1 Tax=Daphnia galeata TaxID=27404 RepID=A0A8J2RPB7_9CRUS)

HSP 1 Score: 67.4 bits (163), Expect = 6.400e-10
Identity = 36/79 (45.57%), Postives = 49/79 (62.03%), Query Frame = 1
Query:  265 AFPYRKSVGTLRWAATTTRAEIAHDVRTTAKFCENPGVAHKRAV--VLQYLLRTANLGITYGGQDCGVEMLAYADSDYA 495
            +FP+R++VG+L +AAT TR +IA  V   A+F  NP  AH  AV  +L YL  T   G+ YGG      +L Y+DSD+A
Sbjct: 1180 SFPFREAVGSLMFAATCTRPDIAFAVNQVAQFSTNPAKAHWEAVKRILSYLRGTITSGVCYGGVQERNMLLTYSDSDFA 1258          
BLAST of mRNA_H-paniculata_contig16251.3594.1 vs. uniprot
Match: A0A015J5I9_RHIIW (Gag-pol fusion protein n=1 Tax=Rhizophagus irregularis (strain DAOM 197198w) TaxID=1432141 RepID=A0A015J5I9_RHIIW)

HSP 1 Score: 62.4 bits (150), Expect = 3.390e-8
Identity = 35/101 (34.65%), Postives = 56/101 (55.45%), Query Frame = 1
Query:  214 MIKNDRPKSSEEAEEMPAFPYRKSVGTLRWAATTTRAEIAHDVRTTAKFCENPGVAHKRAV--VLQYLLRTANLGITYGGQDCGVEMLAYADSDYAMCQDS 510
            + K   P + EE  EM   PY  +VG++ +A T TR ++A  +   +++  NPG AH  AV  +L+YL RT N+ +  GG D  + +  Y D+ +   +DS
Sbjct: 1057 LSKTQSPSTDEEIAEMSRVPYASAVGSIMYAMTCTRPDVAFALSMVSRYQGNPGRAHWIAVKNILKYLRRTKNMVLVLGGSDT-LRVEGYTDASFQTDRDS 1156          
BLAST of mRNA_H-paniculata_contig16251.3594.1 vs. uniprot
Match: UPI001EEB0F88 (secreted RxLR effector protein 161-like n=1 Tax=Daphnia pulicaria TaxID=35523 RepID=UPI001EEB0F88)

HSP 1 Score: 61.2 bits (147), Expect = 3.730e-8
Identity = 35/92 (38.04%), Postives = 53/92 (57.61%), Query Frame = 1
Query:  232 PKSSEEAEEMPAFPYRKSVGTLRWAATTTRAEIAHDVRTTAKFCENPGVAHKRAV--VLQYLLRTANLGITYGGQDCGVE--MLAYADSDYA 495
            P+S +E EEM    Y++SVG L + +TTTR + ++ V   AKF +NPG+ H +AV  + +YL  T   GI +       E  +  Y D+D+A
Sbjct:    3 PQSDKEKEEMEQIQYKESVGALLYISTTTRPDTSYAVSQVAKFNQNPGINHWKAVKRIFRYLAGTKKYGIFFSPNSHEEEKGVTGYTDADHA 94          
BLAST of mRNA_H-paniculata_contig16251.3594.1 vs. uniprot
Match: A0A0J7JVA8_LASNI (Integrase core domain protein (Fragment) n=1 Tax=Lasius niger TaxID=67767 RepID=A0A0J7JVA8_LASNI)

HSP 1 Score: 60.1 bits (144), Expect = 6.910e-8
Identity = 35/89 (39.33%), Postives = 54/89 (60.67%), Query Frame = 1
Query:  235 KSSEEAEEMPAFPYRKSVGTLRWAATTTRAEIAHDVRTTAKFCENPGVAHKRAV--VLQYLLRTANLGITYGGQDCGVEMLAYADSDYA 495
            +++ E +E+  +PYR+++G+L +AAT+TR +IA  V   A+F E P   H  AV  + +YL  T + GI Y   D   + L Y D+DYA
Sbjct:   24 RTATEDDEIVNYPYREAIGSLMYAATSTRPDIAFYVCKLARFMEKPTAVHVTAVKTIFRYLKGTISHGIVYKHDDH--KKLNYTDADYA 110          
BLAST of mRNA_H-paniculata_contig16251.3594.1 vs. uniprot
Match: A0A4U1CSB1_9BACI (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Robertmurraya kyonggiensis TaxID=1037680 RepID=A0A4U1CSB1_9BACI)

HSP 1 Score: 60.1 bits (144), Expect = 1.600e-7
Identity = 35/106 (33.02%), Postives = 59/106 (55.66%), Query Frame = 1
Query:  214 MIKNDR------PKSSEEAEEMPAFPYRKSVGTLRWAATTTRAEIAHDVRTTAKFCENPGVAHKRAV--VLQYLLRTANLGITYGGQDCGVEMLAYADSDYAMCQD 507
            ++K DR      P++  E ++M A PY  ++G+L +A T TR ++A      +++ E PG+ H + V    +Y+  T  L +TY   D  +E+  YAD+DYA  +D
Sbjct:  110 IVKGDRFGKFQCPQNEYERQQMKAVPYSSALGSLSYAQTCTRPDLAFVTNVLSRYQEEPGIEHWKLVKKAFRYVQGTKGLMLTYRRSD-SLEIKGYADADYAGDED 214          
BLAST of mRNA_H-paniculata_contig16251.3594.1 vs. uniprot
Match: A0A4S4M4D4_9APHY (Integrase catalytic domain-containing protein n=1 Tax=Antrodiella citrinella TaxID=2447956 RepID=A0A4S4M4D4_9APHY)

HSP 1 Score: 58.2 bits (139), Expect = 9.610e-7
Identity = 31/81 (38.27%), Postives = 49/81 (60.49%), Query Frame = 1
Query:  262 PAFPYRKSVGTLRWAATTTRAEIAHDVRTTAKFCENPGVAHKRAV--VLQYLLRTANLGITYGGQDCGVEMLAYADSDYAM 498
            P FPY  ++G+L +AA +TR +I++ V+T ++F  N   +H  AV  V +YL  T  LGIT+   D  V +  Y+D+D+  
Sbjct:  858 PEFPYANAIGSLMYAAVSTRPDISYAVQTLSQFTSNFDQSHINAVKHVFRYLKATPTLGITFRTSD--VTLSGYSDADWGQ 936          
BLAST of mRNA_H-paniculata_contig16251.3594.1 vs. uniprot
Match: A0A164KKE8_9CRUS (RNA-directed DNA polymerase n=1 Tax=Daphnia magna TaxID=35525 RepID=A0A164KKE8_9CRUS)

HSP 1 Score: 58.2 bits (139), Expect = 1.020e-6
Identity = 33/95 (34.74%), Postives = 53/95 (55.79%), Query Frame = 1
Query:  214 MIKNDRPKSSEEAEEMPAFPYRKSVGTLRWAATTTRAEIAHDVRTTAKFCENPGVAHKRAV--VLQYLLRTANLGITYGGQDCGVEML-AYADSD 489
            + K+  P      + M A+P+R+ +G++ +AA+T R E+A      ++FC+N G+ H  A   VL+YL+ T N GI + G       L  YAD+D
Sbjct: 2448 LSKSSSPSDQAGIDVMTAYPFRELMGSIMYAASTVRLELAFIANQLSQFCQNSGLDHWNAAKRVLRYLVVTRNHGICFNGNASHWSTLNGYADAD 2542          
BLAST of mRNA_H-paniculata_contig16251.3594.1 vs. uniprot
Match: A0A5A7R8S9_STRAF (Leucine-rich receptor-like protein kinase family protein n=1 Tax=Striga asiatica TaxID=4170 RepID=A0A5A7R8S9_STRAF)

HSP 1 Score: 57.4 bits (137), Expect = 1.670e-6
Identity = 35/108 (32.41%), Postives = 58/108 (53.70%), Query Frame = 1
Query:  190 GHGGKQQTMIKNDRPKSSEEAEEMPAFPYRKSVGTLRWAATTTRAEIAHDVRTTAKFCENPGVAHKRAV--VLQYLLRTANLGITYGGQDCGVEMLAYADSDYAMCQD 507
            GHG K   + K + P +    E M   PY  ++G++ +A T TR ++A+ +  T +F +N GV H +AV  +L+YL R     + YGG +  + +  YAD+ +    D
Sbjct:   12 GHGIK---LSKKNCPSTYVGLERMKKIPYASAIGSIMYAITCTRPDVAYALSITGRFQQNLGVEHWKAVKTILKYLRRFKEYFLVYGGNN-ELAVTGYADASFQSDHD 115          
BLAST of mRNA_H-paniculata_contig16251.3594.1 vs. uniprot
Match: A0A146HX64_MYCCL (Polyprotein n=1 Tax=Mycena chlorophos TaxID=658473 RepID=A0A146HX64_MYCCL)

HSP 1 Score: 57.4 bits (137), Expect = 1.800e-6
Identity = 35/81 (43.21%), Postives = 51/81 (62.96%), Query Frame = 1
Query:  274 YRKSVGTLRWAATTTRAEIAHDVRTTAKFCENPGVAHKRAV--VLQYLLRTANLGITYG-GQDCGVEMLAYADSDYAMCQD 507
            Y+  VG+L +AA +TR +IA+ V++ ++F  NPG AH  AV  V +YL  T NLGI Y  G D  VE+  ++D+D+    D
Sbjct: 1105 YQHMVGSLMYAAISTRPDIAYAVQSLSQFNLNPGPAHLTAVKRVFRYLRGTVNLGIRYAPGIDTAVEL--FSDADWGNSSD 1183          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig16251.3594.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI001E1BCD311.730e-1140.45secreted RxLR effector protein 161-like n=1 Tax=Da... [more]
A0A8J2RPB7_9CRUS6.400e-1045.57Hypothetical protein n=1 Tax=Daphnia galeata TaxID... [more]
A0A015J5I9_RHIIW3.390e-834.65Gag-pol fusion protein n=1 Tax=Rhizophagus irregul... [more]
UPI001EEB0F883.730e-838.04secreted RxLR effector protein 161-like n=1 Tax=Da... [more]
A0A0J7JVA8_LASNI6.910e-839.33Integrase core domain protein (Fragment) n=1 Tax=L... [more]
A0A4U1CSB1_9BACI1.600e-733.02Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A4S4M4D4_9APHY9.610e-738.27Integrase catalytic domain-containing protein n=1 ... [more]
A0A164KKE8_9CRUS1.020e-634.74RNA-directed DNA polymerase n=1 Tax=Daphnia magna ... [more]
A0A5A7R8S9_STRAF1.670e-632.41Leucine-rich receptor-like protein kinase family p... [more]
A0A146HX64_MYCCL1.800e-643.21Polyprotein n=1 Tax=Mycena chlorophos TaxID=658473... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig16251contigH-paniculata_contig16251:2753..3265 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score75.1
Seed ortholog evalue2.1e-11
Seed eggNOG ortholog67593.Physo130920
Hectar predicted targeting categoryother localisation
EggNOG free text desc.transposition, RNA-mediated
EggNOG OGs3QH7N@4776,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Exons1
Model size513
Cds size300
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929297.484801-UTR-H-paniculata_contig16251:2752..29651622929297.484801-UTR-H-paniculata_contig16251:2752..2965Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig16251 2753..2965 +
1691480805.436441-UTR-H-paniculata_contig16251:2752..29651691480805.436441-UTR-H-paniculata_contig16251:2752..2965Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig16251 2753..2965 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929297.5001218-CDS-H-paniculata_contig16251:2965..32651622929297.5001218-CDS-H-paniculata_contig16251:2965..3265Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16251 2966..3265 +
1691480805.447532-CDS-H-paniculata_contig16251:2965..32651691480805.447532-CDS-H-paniculata_contig16251:2965..3265Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16251 2966..3265 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig16251.3594.1prot_H-paniculata_contig16251.3594.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig16251 2966..3265 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig16251.3594.1

>prot_H-paniculata_contig16251.3594.1 ID=prot_H-paniculata_contig16251.3594.1|Name=mRNA_H-paniculata_contig16251.3594.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=100bp
MIKNDRPKSSEEAEEMPAFPYRKSVGTLRWAATTTRAEIAHDVRTTAKFC
ENPGVAHKRAVVLQYLLRTANLGITYGGQDCGVEMLAYADSDYAMCQDS*
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mRNA from alignment at H-paniculata_contig16251:2753..3265+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig16251.3594.1 ID=mRNA_H-paniculata_contig16251.3594.1|Name=mRNA_H-paniculata_contig16251.3594.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=513bp|location=Sequence derived from alignment at H-paniculata_contig16251:2753..3265+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAAAATCATGGACGAGTTGCTGGCGGACTTGCGATCGGATTACAAGCTCA AAGACCTGGGAGATGCAAGGTACTATTTAGGATGCCACATAGCCCACGGT AGGAAAAAGAGGGAGATCAAGATCGACCAGCACCTCTACGCGAGGTCCAT GGTCGAGCGTTTCGGGATAACTAAGTCCAGCATGCTCCCGGCCACGGCGG GAAACAACAAACCATGATAAAAAACGACAGGCCGAAGAGCTCAGAGGAAG CCGAGGAGATGCCGGCATTCCCATACAGGAAGTCAGTGGGGACGCTCAGA TGGGCGGCGACAACGACGCGAGCCGAAATCGCACACGACGTACGCACTAC GGCAAAGTTCTGTGAGAACCCAGGGGTGGCGCACAAGAGAGCTGTGGTTC TTCAGTACCTACTAAGGACCGCGAACCTGGGAATCACCTACGGCGGACAG GACTGCGGGGTCGAAATGTTGGCTTACGCTGACTCGGACTACGCGATGTG CCAGGACAGCTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig16251:2753..3265+

>mRNA_H-paniculata_contig16251.3594.1 ID=mRNA_H-paniculata_contig16251.3594.1|Name=mRNA_H-paniculata_contig16251.3594.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=600bp|location=Sequence derived from alignment at H-paniculata_contig16251:2753..3265+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGATAAAAAACGACAGGCCGAAGAGCTCAGAGGAAGCCGAGGAGATGCC
GGCATTCCCATACAGGAAGTCAGTGGGGACGCTCAGATGGGCGGCGACAA
CGACGCGAGCCGAAATCGCACACGACGTACGCACTACGGCAAAGTTCTGT
GAGAACCCAGGGGTGGCGCACAAGAGAGCTGTGGTTCTTCAGTACCTACT
AAGGACCGCGAACCTGGGAATCACCTACGGCGGACAGGACTGCGGGGTCG
AAATGTTGGCTTACGCTGACTCGGACTACGCGATGTGCCAGGACAGCTGA
ATGATAAAAAACGACAGGCCGAAGAGCTCAGAGGAAGCCGAGGAGATGCC
GGCATTCCCATACAGGAAGTCAGTGGGGACGCTCAGATGGGCGGCGACAA
CGACGCGAGCCGAAATCGCACACGACGTACGCACTACGGCAAAGTTCTGT
GAGAACCCAGGGGTGGCGCACAAGAGAGCTGTGGTTCTTCAGTACCTACT
AAGGACCGCGAACCTGGGAATCACCTACGGCGGACAGGACTGCGGGGTCG
AAATGTTGGCTTACGCTGACTCGGACTACGCGATGTGCCAGGACAGCTGA
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