mRNA_H-paniculata_contig16251.3594.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig16251.3594.1 vs. uniprot
Match: UPI001E1BCD31 (secreted RxLR effector protein 161-like n=1 Tax=Daphnia magna TaxID=35525 RepID=UPI001E1BCD31) HSP 1 Score: 70.5 bits (171), Expect = 1.730e-11 Identity = 36/89 (40.45%), Postives = 56/89 (62.92%), Query Frame = 1
Query: 232 PKSSEEAEEMPAFPYRKSVGTLRWAATTTRAEIAHDVRTTAKFCENPGVAHKRAV--VLQYLLRTANLGITYGGQDCGVEMLAYADSDY 492
P+ +E EEM PY+++VG L + +TTTR +I++ V AKF +NPG+ H +AV +++Y+ T GI Y Q+ G + Y D+DY
Sbjct: 23 PQQQKEKEEMKNIPYKEAVGALLYLSTTTRPDISYAVGQVAKFSQNPGIQHWKAVKRIIRYIAGTRTYGILYS-QEKGEMVTGYTDADY 110
BLAST of mRNA_H-paniculata_contig16251.3594.1 vs. uniprot
Match: A0A8J2RPB7_9CRUS (Hypothetical protein n=1 Tax=Daphnia galeata TaxID=27404 RepID=A0A8J2RPB7_9CRUS) HSP 1 Score: 67.4 bits (163), Expect = 6.400e-10 Identity = 36/79 (45.57%), Postives = 49/79 (62.03%), Query Frame = 1
Query: 265 AFPYRKSVGTLRWAATTTRAEIAHDVRTTAKFCENPGVAHKRAV--VLQYLLRTANLGITYGGQDCGVEMLAYADSDYA 495
+FP+R++VG+L +AAT TR +IA V A+F NP AH AV +L YL T G+ YGG +L Y+DSD+A
Sbjct: 1180 SFPFREAVGSLMFAATCTRPDIAFAVNQVAQFSTNPAKAHWEAVKRILSYLRGTITSGVCYGGVQERNMLLTYSDSDFA 1258
BLAST of mRNA_H-paniculata_contig16251.3594.1 vs. uniprot
Match: A0A015J5I9_RHIIW (Gag-pol fusion protein n=1 Tax=Rhizophagus irregularis (strain DAOM 197198w) TaxID=1432141 RepID=A0A015J5I9_RHIIW) HSP 1 Score: 62.4 bits (150), Expect = 3.390e-8 Identity = 35/101 (34.65%), Postives = 56/101 (55.45%), Query Frame = 1
Query: 214 MIKNDRPKSSEEAEEMPAFPYRKSVGTLRWAATTTRAEIAHDVRTTAKFCENPGVAHKRAV--VLQYLLRTANLGITYGGQDCGVEMLAYADSDYAMCQDS 510
+ K P + EE EM PY +VG++ +A T TR ++A + +++ NPG AH AV +L+YL RT N+ + GG D + + Y D+ + +DS
Sbjct: 1057 LSKTQSPSTDEEIAEMSRVPYASAVGSIMYAMTCTRPDVAFALSMVSRYQGNPGRAHWIAVKNILKYLRRTKNMVLVLGGSDT-LRVEGYTDASFQTDRDS 1156
BLAST of mRNA_H-paniculata_contig16251.3594.1 vs. uniprot
Match: UPI001EEB0F88 (secreted RxLR effector protein 161-like n=1 Tax=Daphnia pulicaria TaxID=35523 RepID=UPI001EEB0F88) HSP 1 Score: 61.2 bits (147), Expect = 3.730e-8 Identity = 35/92 (38.04%), Postives = 53/92 (57.61%), Query Frame = 1
Query: 232 PKSSEEAEEMPAFPYRKSVGTLRWAATTTRAEIAHDVRTTAKFCENPGVAHKRAV--VLQYLLRTANLGITYGGQDCGVE--MLAYADSDYA 495
P+S +E EEM Y++SVG L + +TTTR + ++ V AKF +NPG+ H +AV + +YL T GI + E + Y D+D+A
Sbjct: 3 PQSDKEKEEMEQIQYKESVGALLYISTTTRPDTSYAVSQVAKFNQNPGINHWKAVKRIFRYLAGTKKYGIFFSPNSHEEEKGVTGYTDADHA 94
BLAST of mRNA_H-paniculata_contig16251.3594.1 vs. uniprot
Match: A0A0J7JVA8_LASNI (Integrase core domain protein (Fragment) n=1 Tax=Lasius niger TaxID=67767 RepID=A0A0J7JVA8_LASNI) HSP 1 Score: 60.1 bits (144), Expect = 6.910e-8 Identity = 35/89 (39.33%), Postives = 54/89 (60.67%), Query Frame = 1
Query: 235 KSSEEAEEMPAFPYRKSVGTLRWAATTTRAEIAHDVRTTAKFCENPGVAHKRAV--VLQYLLRTANLGITYGGQDCGVEMLAYADSDYA 495
+++ E +E+ +PYR+++G+L +AAT+TR +IA V A+F E P H AV + +YL T + GI Y D + L Y D+DYA
Sbjct: 24 RTATEDDEIVNYPYREAIGSLMYAATSTRPDIAFYVCKLARFMEKPTAVHVTAVKTIFRYLKGTISHGIVYKHDDH--KKLNYTDADYA 110
BLAST of mRNA_H-paniculata_contig16251.3594.1 vs. uniprot
Match: A0A4U1CSB1_9BACI (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Robertmurraya kyonggiensis TaxID=1037680 RepID=A0A4U1CSB1_9BACI) HSP 1 Score: 60.1 bits (144), Expect = 1.600e-7 Identity = 35/106 (33.02%), Postives = 59/106 (55.66%), Query Frame = 1
Query: 214 MIKNDR------PKSSEEAEEMPAFPYRKSVGTLRWAATTTRAEIAHDVRTTAKFCENPGVAHKRAV--VLQYLLRTANLGITYGGQDCGVEMLAYADSDYAMCQD 507
++K DR P++ E ++M A PY ++G+L +A T TR ++A +++ E PG+ H + V +Y+ T L +TY D +E+ YAD+DYA +D
Sbjct: 110 IVKGDRFGKFQCPQNEYERQQMKAVPYSSALGSLSYAQTCTRPDLAFVTNVLSRYQEEPGIEHWKLVKKAFRYVQGTKGLMLTYRRSD-SLEIKGYADADYAGDED 214
BLAST of mRNA_H-paniculata_contig16251.3594.1 vs. uniprot
Match: A0A4S4M4D4_9APHY (Integrase catalytic domain-containing protein n=1 Tax=Antrodiella citrinella TaxID=2447956 RepID=A0A4S4M4D4_9APHY) HSP 1 Score: 58.2 bits (139), Expect = 9.610e-7 Identity = 31/81 (38.27%), Postives = 49/81 (60.49%), Query Frame = 1
Query: 262 PAFPYRKSVGTLRWAATTTRAEIAHDVRTTAKFCENPGVAHKRAV--VLQYLLRTANLGITYGGQDCGVEMLAYADSDYAM 498
P FPY ++G+L +AA +TR +I++ V+T ++F N +H AV V +YL T LGIT+ D V + Y+D+D+
Sbjct: 858 PEFPYANAIGSLMYAAVSTRPDISYAVQTLSQFTSNFDQSHINAVKHVFRYLKATPTLGITFRTSD--VTLSGYSDADWGQ 936
BLAST of mRNA_H-paniculata_contig16251.3594.1 vs. uniprot
Match: A0A164KKE8_9CRUS (RNA-directed DNA polymerase n=1 Tax=Daphnia magna TaxID=35525 RepID=A0A164KKE8_9CRUS) HSP 1 Score: 58.2 bits (139), Expect = 1.020e-6 Identity = 33/95 (34.74%), Postives = 53/95 (55.79%), Query Frame = 1
Query: 214 MIKNDRPKSSEEAEEMPAFPYRKSVGTLRWAATTTRAEIAHDVRTTAKFCENPGVAHKRAV--VLQYLLRTANLGITYGGQDCGVEML-AYADSD 489
+ K+ P + M A+P+R+ +G++ +AA+T R E+A ++FC+N G+ H A VL+YL+ T N GI + G L YAD+D
Sbjct: 2448 LSKSSSPSDQAGIDVMTAYPFRELMGSIMYAASTVRLELAFIANQLSQFCQNSGLDHWNAAKRVLRYLVVTRNHGICFNGNASHWSTLNGYADAD 2542
BLAST of mRNA_H-paniculata_contig16251.3594.1 vs. uniprot
Match: A0A5A7R8S9_STRAF (Leucine-rich receptor-like protein kinase family protein n=1 Tax=Striga asiatica TaxID=4170 RepID=A0A5A7R8S9_STRAF) HSP 1 Score: 57.4 bits (137), Expect = 1.670e-6 Identity = 35/108 (32.41%), Postives = 58/108 (53.70%), Query Frame = 1
Query: 190 GHGGKQQTMIKNDRPKSSEEAEEMPAFPYRKSVGTLRWAATTTRAEIAHDVRTTAKFCENPGVAHKRAV--VLQYLLRTANLGITYGGQDCGVEMLAYADSDYAMCQD 507
GHG K + K + P + E M PY ++G++ +A T TR ++A+ + T +F +N GV H +AV +L+YL R + YGG + + + YAD+ + D
Sbjct: 12 GHGIK---LSKKNCPSTYVGLERMKKIPYASAIGSIMYAITCTRPDVAYALSITGRFQQNLGVEHWKAVKTILKYLRRFKEYFLVYGGNN-ELAVTGYADASFQSDHD 115
BLAST of mRNA_H-paniculata_contig16251.3594.1 vs. uniprot
Match: A0A146HX64_MYCCL (Polyprotein n=1 Tax=Mycena chlorophos TaxID=658473 RepID=A0A146HX64_MYCCL) HSP 1 Score: 57.4 bits (137), Expect = 1.800e-6 Identity = 35/81 (43.21%), Postives = 51/81 (62.96%), Query Frame = 1
Query: 274 YRKSVGTLRWAATTTRAEIAHDVRTTAKFCENPGVAHKRAV--VLQYLLRTANLGITYG-GQDCGVEMLAYADSDYAMCQD 507
Y+ VG+L +AA +TR +IA+ V++ ++F NPG AH AV V +YL T NLGI Y G D VE+ ++D+D+ D
Sbjct: 1105 YQHMVGSLMYAAISTRPDIAYAVQSLSQFNLNPGPAHLTAVKRVFRYLRGTVNLGIRYAPGIDTAVEL--FSDADWGNSSD 1183 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig16251.3594.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig16251.3594.1 >prot_H-paniculata_contig16251.3594.1 ID=prot_H-paniculata_contig16251.3594.1|Name=mRNA_H-paniculata_contig16251.3594.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=100bp MIKNDRPKSSEEAEEMPAFPYRKSVGTLRWAATTTRAEIAHDVRTTAKFCback to top mRNA from alignment at H-paniculata_contig16251:2753..3265+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig16251.3594.1 ID=mRNA_H-paniculata_contig16251.3594.1|Name=mRNA_H-paniculata_contig16251.3594.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=513bp|location=Sequence derived from alignment at H-paniculata_contig16251:2753..3265+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig16251:2753..3265+ >mRNA_H-paniculata_contig16251.3594.1 ID=mRNA_H-paniculata_contig16251.3594.1|Name=mRNA_H-paniculata_contig16251.3594.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=600bp|location=Sequence derived from alignment at H-paniculata_contig16251:2753..3265+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |