mRNA_H-paniculata_contig16250.3593.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig16250.3593.1 vs. uniprot
Match: A0A6H5K5X7_9PHAE (MRG domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K5X7_9PHAE) HSP 1 Score: 361 bits (926), Expect = 4.180e-123 Identity = 189/266 (71.05%), Postives = 213/266 (80.08%), Query Frame = 1
Query: 1 VIKLKPSGDQFTYFLHYMGWNSRWDKWVIESDLMKEGAEAEEMQKQLKKXXXXXXXXXXXXXXDVVPKEDQKA-----------KKARIDIKKDTEDDTGVAEVKVAMPFTLKKQLIMDWERVTHD-RRFVKLPRELTAAEVLSNYVETKVKRSTPQQSARAQELMDGVRLYFDKALPLMLLYRQERSQYDVTVEKHPGKSPSEIYGAEHLLRVFVRIPQLLAQSALTQPEVTQVQKLLGDFLRYMQKNHAQFFVQEYEDREPVRP 762
VIKLKPSG+QFTYFLHYMGWNSRWDKWV+ESDLM G EA EMQ+QLK KEDQ K+AR+D+KKDTEDD+GV EVKVAMPFTLKKQL+ DWE VT + RR VKLPRE+TAA+V++ Y+++K R TPQQ+ARAQELMDGVR+YFDKALPL+LLYRQER+QYD+TV+K PGKSPSEIYGAEHLLRVFVR+PQLLAQSALT PEVTQVQKLL DFLR+MQKNHA FFVQEYED EP P
Sbjct: 37 VIKLKPSGEQFTYFLHYMGWNSRWDKWVVESDLMAAGPEALEMQQQLKDKKKKAKVNAAKR------KEDQXXXXXXXXXXXXXKRARVDVKKDTEDDSGVTEVKVAMPFTLKKQLVTDWEHVTQEPRRLVKLPREVTAADVMAQYMDSKANRGTPQQTARAQELMDGVRIYFDKALPLILLYRQERTQYDITVQKLPGKSPSEIYGAEHLLRVFVRLPQLLAQSALTPPEVTQVQKLLADFLRFMQKNHAAFFVQEYEDEEPEEP 296
BLAST of mRNA_H-paniculata_contig16250.3593.1 vs. uniprot
Match: A0A836CM09_9STRA (Putative chromatin binding protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CM09_9STRA) HSP 1 Score: 210 bits (534), Expect = 1.490e-63 Identity = 119/267 (44.57%), Postives = 163/267 (61.05%), Query Frame = 1
Query: 1 VIKLKPSGD-QFTYFLHYMGWNSRWDKWVIESDLMKEGAEAEEMQKQLKKXXXXXXXXXXXXXXDVVP-------------------KEDQKAKKARIDIKKDTEDDTGVAEVKVAMPFTLKKQLIMDWERVTHDRR-FVKLPRELTAAEVLSNYVETKVKRSTPQQSARAQELMDGVRLYFDKALPLMLLYRQERSQYDVTVEKHPGKSPSEIYGAEHLLRVFVRIPQLLAQSALTQPEVTQVQKLLGDFLRYMQKNHAQFFVQEY 738
++KLK + D + YF+HY+GWNSRWDKW E +LM +G E+EE+QK+LK + KK RID K TEDD+ +A++K+ +PFTLK+QL+ DWE VT + R + LPR TAA VL ++E+K T Q AR +EL+DG+RLYFD+ALPL+LLY ER + V + G++ SE+YGAEHLLR+F ++P LLAQ+ L EV Q+Q LG+FL+YMQKN + F +Y
Sbjct: 32 IMKLKQTDDGKHHYFVHYLGWNSRWDKWSEEQELMPDGPESEELQKRLKDEIKQRQGAPKAAVRKSISGGGXXXXXXXXXXXXXXXXXXXAARKKPRIDTKAATEDDSELAQIKLPIPFTLKRQLVQDWENVTQEPRCLLPLPRARTAAHVLDAFIESKRGACTAAQLARFRELVDGLRLYFDRALPLILLYAHEREHHAAVVAHNKGRAASELYGAEHLLRLFTKLPALLAQTNLNSNEVGQLQAKLGEFLKYMQKNAGELFHGDY 298
BLAST of mRNA_H-paniculata_contig16250.3593.1 vs. uniprot
Match: A0A7S2RY99_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RY99_9STRA) HSP 1 Score: 191 bits (485), Expect = 2.610e-56 Identity = 106/248 (42.74%), Postives = 149/248 (60.08%), Query Frame = 1
Query: 7 KLKPSGDQFTYFLHYMGWNSRWDKWVIESDLMKEGAEAEEMQKQLKKXXXXXXXXXXXXXXDVVP--KEDQKAKKARIDIKKDTEDDT-GVAEVKVAMPFTLKKQLIMDWERVTHDR--RFVKLPRELTAAEVLSNYVETKVKRSTPQQSARAQELMDGVRLYFDKALPLMLLYRQERSQYDVTVEKHPGKSPSEIYGAEHLLRVFVRIPQLLAQSALTQPEVTQVQKLLGDFLRYMQKNHAQFFVQE 735
K++ G YF+HY GW+ +WD+WV S L+KEG A++M K+L + K Q+ KKARID ++D E G E+K+ +PFTLKK+L+ DWER+T + V LPR ++ Y+E+K +RS+ Q R EL G+R YFD ALP+ LLYRQER+QY V+ HP + SE+YGAEHLLR+F ++PQ+L ++ L E Q+Q LG+F +YMQ+ F QE
Sbjct: 54 KVRRVGQDGQYFIHYQGWSKKWDRWVHCSLLLKEGPAADKMSKKLMAEEQQRQETAARLKREARADEKSSQEKKKARIDHQRDVEAPAQGTFELKLPLPFTLKKKLVEDWERITQTSPGQVVPLPRTPCVKGIIDEYLESKKERSSSQNHQRLTELFGGLRTYFDAALPITLLYRQERAQYYQYVQDHPDATMSEVYGAEHLLRLFTKLPQILGRARLASVEAAQLQTNLGEFFKYMQRQATDLFTQE 301
BLAST of mRNA_H-paniculata_contig16250.3593.1 vs. uniprot
Match: A0A1R3GEW0_COCAP (MRG family protein (Fragment) n=3 Tax=Malvaceae TaxID=3629 RepID=A0A1R3GEW0_COCAP) HSP 1 Score: 171 bits (432), Expect = 1.090e-48 Identity = 103/261 (39.46%), Postives = 148/261 (56.70%), Query Frame = 1
Query: 1 VIKLKPSGDQFTYFLHYMGWNSRWDKWVIESDLMKEGAEAEEMQKQLKKXXXXXXXXXXXXXXDVVPKEDQKAKKARIDIK------KDTEDDTGVAE--------VKVAMPFTLKKQLIMDWERVTHDRRFVKLPRELTAAEVLSNYVETKVKRSTPQQSARAQELMDGVRLYFDKALPLMLLYRQERSQYDVTVEKHPGKSPSEIYGAEHLLRVFVRIPQLLAQSALTQPEVTQVQKLLGDFLRYMQKNHAQFFVQEYE 741
V K + ++ YF+HY+GWN WD+WV LMK E QK L K PK AK+ + ++K K + D+GV + VK+ +P TLKKQL+ DWE VT + VKLPR ++L+ Y+E + K+ + E++ G+R YFDKALP+MLLY++ER QY+ V SPS IYGAEHLLR+FV+ P+LLA + + +T++Q+ L DFL+++QKN + FF+ YE
Sbjct: 1 VQKAELRKKEWKYFVHYLGWNKNWDEWVGADRLMKHTEENVMKQKALDKKQGVDKSSKSGRSSQTKPKSSADAKEDKEEVKNTVPKGKKRKSDSGVEKDNSSVEKLVKIQIPSTLKKQLVDDWEFVTQQDKLVKLPRTPNVDDILTKYLEYRSKKDGTMTDSIG-EILKGIRCYFDKALPVMLLYKKERQQYNEVVVD--DVSPSTIYGAEHLLRLFVKFPELLAYVNIEEETLTRLQQKLMDFLKFLQKNQSSFFLSAYE 258
BLAST of mRNA_H-paniculata_contig16250.3593.1 vs. uniprot
Match: UPI000B78B1B0 (protein MRG1-like isoform X1 n=5 Tax=Chenopodium quinoa TaxID=63459 RepID=UPI000B78B1B0) HSP 1 Score: 170 bits (430), Expect = 7.650e-48 Identity = 103/258 (39.92%), Postives = 150/258 (58.14%), Query Frame = 1
Query: 1 VIKLKPSGDQFTYFLHYMGWNSRWDKWVIESDLMKEGAEAEEMQKQLKKXXXXXXXXXXXXXXDVVPKEDQKAKKARIDIK---------KDTEDDTGVAE--VKVAMPFTLKKQLIMDWERVTHDRRFVKLPRELTAAEVLSNYVETKVKRSTPQQSARAQELMDGVRLYFDKALPLMLLYRQERSQYDVTVEKHPGKSPSEIYGAEHLLRVFVRIPQLLAQSALTQPEVTQVQKLLGDFLRYMQKNHAQFFVQEYE 741
+ K + ++ YF+HY+GWN WD+WV LMK E + Q+ L+K PK AK + D+K K E D+ AE VK+ +P LKKQL+ DWE VT + VKLPR T +VL Y+E + ++ + A E+++G+R YFDKALPLMLLY++ER QY V + SPS +YGA+HLLR+FV++P+LLA + + +T++Q+ L DFLR++QKN + FF+ Y+
Sbjct: 53 IQKAEIRKKEWRYFVHYLGWNKNWDEWVGMDRLMKITEENIQKQQALEKKQGADKHHRSGRSAQTKPKGSTDAKVDKEDVKSNVAKGKKRKGDEKDSASAEKLVKIQIPSPLKKQLVDDWEFVTQKDKLVKLPRSPTVDDVLKKYLEYRTRKDGTITDSIA-EILNGLRCYFDKALPLMLLYKKERQQYHEAVTNNA--SPSTVYGADHLLRLFVKLPELLAYVNMEEETMTRLQQKLVDFLRFLQKNQSTFFLSVYD 307
BLAST of mRNA_H-paniculata_contig16250.3593.1 vs. uniprot
Match: A0A6P8DR80_PUNGR (protein MRG1 isoform X1 n=3 Tax=Punica granatum TaxID=22663 RepID=A0A6P8DR80_PUNGR) HSP 1 Score: 169 bits (429), Expect = 1.050e-47 Identity = 106/261 (40.61%), Postives = 149/261 (57.09%), Query Frame = 1
Query: 1 VIKLKPSGDQFTYFLHYMGWNSRWDKWVIESDLMKEGAEAEEMQKQLKKXXXXXXXXXXXXXXDVVPKEDQKAKKARIDIKKD------------TEDDTGVAE--VKVAMPFTLKKQLIMDWERVTHDRRFVKLPRELTAAEVLSNYVETKVKRSTPQQSARAQELMDGVRLYFDKALPLMLLYRQERSQYDVTVEKHPGKSPSEIYGAEHLLRVFVRIPQLLAQSALTQPEVTQVQKLLGDFLRYMQKNHAQFFVQEYE 741
V K + +++ YF+HY+GWN WD+WV L+K E Q+ L+K PK AK + D+K TE D VAE VK+ +P TLKKQL+ DWE +T + VKLPR T ++L++Y+E K K+ + E++ G+R YFDKALP MLLYR+ER QY V SPS IYGAEHLLR+FV++P+LL Q + + +T++Q+ L DFL+++QKN + FF+ YE
Sbjct: 47 VQKTEVRKNEWRYFVHYLGWNKNWDEWVGADRLLKYTEENIMKQQALEKKQGIDRNPKSGRLTQHKPKISADAKVDKEDLKSIATKGKKRKNDAVTEKDNVVAEKLVKIQIPSTLKKQLVDDWEFITQRDKLVKLPRSPTVDDILTSYLEHKSKKDATVTDS-VGEVLKGLRCYFDKALPAMLLYRKERQQYKEAVAA--TVSPSTIYGAEHLLRLFVKLPELLVQVNIEEETLTRLQQKLVDFLKFLQKNQSTFFLSAYE 304
BLAST of mRNA_H-paniculata_contig16250.3593.1 vs. uniprot
Match: A0A072UR24_MEDTR (Chromatin-binding protein n=1 Tax=Medicago truncatula TaxID=3880 RepID=A0A072UR24_MEDTR) HSP 1 Score: 169 bits (428), Expect = 1.440e-47 Identity = 103/261 (39.46%), Postives = 152/261 (58.24%), Query Frame = 1
Query: 1 VIKLKPSGDQFTYFLHYMGWNSRWDKWVIESDLMKEGAEAEEMQKQLKKXXXXXXXXXXXXXXDVVPKEDQKAKKARIDIK------KDTEDDTGVAE--------VKVAMPFTLKKQLIMDWERVTHDRRFVKLPRELTAAEVLSNYVETKVKRSTPQQSARAQELMDGVRLYFDKALPLMLLYRQERSQYDVTVEKHPGKSPSEIYGAEHLLRVFVRIPQLLAQSALTQPEVTQVQKLLGDFLRYMQKNHAQFFVQEYE 741
V K + +++ YF+HY+GWN WD+WV ES LMK E Q+ L K V K AK + DIK K + D+GV + K+ +P LKKQL+ DW+ V + VKLPR T E+L+ Y+E K K+ + + + E++ G+RLYFDKALP+ML+Y++ER Q + V + SPS IYGAEHLLR+FV++P+LL+ + + ++++Q+ L DFLR++QKN + FF+ YE
Sbjct: 48 VQKAEIRKNEWRYFVHYLGWNKNWDEWVGESRLMKHNDENVVKQRALDKKQGVDKNVKSGRSAQVKAKSSADAKVEKEDIKNIASKGKKRKIDSGVEKGSGNDEKLFKIQIPAPLKKQLVDDWDFVNQQDKLVKLPRSPTVDEILTKYLEYKSKKDSVEADSTG-EILKGIRLYFDKALPMMLVYKKERKQCNEAVVDNV--SPSTIYGAEHLLRLFVKLPELLSYVNIEEETLSRLQQKLLDFLRFLQKNQSTFFLSAYE 305
BLAST of mRNA_H-paniculata_contig16250.3593.1 vs. uniprot
Match: UPI00053F30A2 (protein MRG1 n=1 Tax=Beta vulgaris subsp. vulgaris TaxID=3555 RepID=UPI00053F30A2) HSP 1 Score: 168 bits (426), Expect = 2.730e-47 Identity = 101/255 (39.61%), Postives = 150/255 (58.82%), Query Frame = 1
Query: 1 VIKLKPSGDQFTYFLHYMGWNSRWDKWVIESDLMKEGAEAEEMQKQLKKXXXXXXXXXXXXXXDVVPK------EDQKAKKARIDIKKDTEDDTGVAE--VKVAMPFTLKKQLIMDWERVTHDRRFVKLPRELTAAEVLSNYVETKVKRSTPQQSARAQELMDGVRLYFDKALPLMLLYRQERSQYDVTVEKHPGKSPSEIYGAEHLLRVFVRIPQLLAQSALTQPEVTQVQKLLGDFLRYMQKNHAQFFVQEYE 741
V K++ ++ YF+HY+GWN WD+WV LMK E + Q L+K PK E+ K A+ +K E ++ AE VK+ MP TLKKQL+ DWE V+ + VKLPR ++L Y+E + ++ + A E+++G+R YFDKALPLMLLY++ER QY V + SPS +YGAEHLLR+FV++P+LLA + + +T++Q+ L DF+R++QKN + FF+ Y+
Sbjct: 52 VQKIETRKKEWRYFVHYLGWNKNWDEWVSADRLMKITDENIQKQLALEKKLGADKHHKSGRSAQTKPKDAKLDKEETKNNVAKGKKRKTDEKESISAEKLVKIQMPSTLKKQLVDDWEFVSQKDKLVKLPRSPNVDDILKKYLEYRTRKDGTMTDSIA-EILNGLRCYFDKALPLMLLYKKERQQYHEAVTNNV--SPSTVYGAEHLLRLFVKLPELLAYVNMEEETMTRLQQKLVDFIRFLQKNQSTFFLSVYD 303
BLAST of mRNA_H-paniculata_contig16250.3593.1 vs. uniprot
Match: A0A833UGK4_JUGRE (MRG domain-containing protein n=13 Tax=Fagales TaxID=3502 RepID=A0A833UGK4_JUGRE) HSP 1 Score: 169 bits (427), Expect = 4.220e-47 Identity = 101/261 (38.70%), Postives = 149/261 (57.09%), Query Frame = 1
Query: 1 VIKLKPSGDQFTYFLHYMGWNSRWDKWVIESDLMKEGAEAEEMQKQLKKXXXXXXXXXXXXXXDVVPKEDQKAKKARIDIK------KDTEDDTGVAE--------VKVAMPFTLKKQLIMDWERVTHDRRFVKLPRELTAAEVLSNYVETKVKRSTPQQSARAQELMDGVRLYFDKALPLMLLYRQERSQYDVTVEKHPGKSPSEIYGAEHLLRVFVRIPQLLAQSALTQPEVTQVQKLLGDFLRYMQKNHAQFFVQEYE 741
V K + ++ YF+HY+GWN WD+WV LMK E Q+ L K PK AK + D+K K + D+G + V++ +P TL+KQL+ DWE VT + VKLPR T ++L+ Y+E + K+ + E++ G+R YFDKALP+MLLY++ER QY V + SPS IYGAEHLLR+FV++P+LLA + + +T++Q+ L DFL+++QKNH+ FF+ Y+
Sbjct: 77 VQKAERRKKEWRYFVHYLGWNKNWDEWVGVDRLMKHTEENVMKQQALDKKQGVDKNPKSGRSAQTKPKSSADAKLDKEDLKNNVSKGKKRKSDSGAEKDNVSLEKLVRIQIPSTLRKQLVDDWEFVTQQDKLVKLPRSPTVDDILTKYLEYRSKKDGMMTDSIG-EILKGIRCYFDKALPVMLLYKKERKQYHEAVVDNV--SPSTIYGAEHLLRLFVKLPELLAYVNIEEETLTRLQQKLLDFLKFLQKNHSTFFLSAYD 334
BLAST of mRNA_H-paniculata_contig16250.3593.1 vs. uniprot
Match: A0A7N0UDN3_KALFE (MRG domain-containing protein n=1 Tax=Kalanchoe fedtschenkoi TaxID=63787 RepID=A0A7N0UDN3_KALFE) HSP 1 Score: 168 bits (425), Expect = 4.260e-47 Identity = 102/261 (39.08%), Postives = 151/261 (57.85%), Query Frame = 1
Query: 1 VIKLKPSGDQFTYFLHYMGWNSRWDKWVIESDLMKEGAEAEEMQKQLKKXXXXXXXXXXXXXXDVVPKEDQKAKKARIDIK------KDTEDDTGVAE--------VKVAMPFTLKKQLIMDWERVTHDRRFVKLPRELTAAEVLSNYVETKVKRSTPQQSARAQELMDGVRLYFDKALPLMLLYRQERSQYDVTVEKHPGKSPSEIYGAEHLLRVFVRIPQLLAQSALTQPEVTQVQKLLGDFLRYMQKNHAQFFVQEYE 741
V K + ++ YF+HY+GWN WD+WV L+K E Q+ L+K PK +AK + D K K + D+ V + VK+ MP +L+KQL+ DWE VT + VKLPR T E+L+ Y+E K K+ PQ + E++ GVR YFDKAL LMLLY++ERSQ++ + ++ SPS +YGAEHLLR+FV++P+LL+ + Q ++Q+ L DFL+++QK+ + FF+ YE
Sbjct: 50 VQKTEFRKKEWKYFVHYLGWNKSWDEWVGADRLLKHTEENVLKQQALEKKQGVDKNTKSGRGGHTKPKSSAEAKADKEDNKTHVSRGKKRKSDSAVEKDNASVEKPVKIQMPSSLRKQLVEDWESVTQQNKLVKLPRSPTVDEILTKYLEYKSKKD-PQSADAVGEILKGVRCYFDKALALMLLYKKERSQFNEAIAENV--SPSTVYGAEHLLRLFVKLPELLSFLNIDQETSMRLQQRLLDFLKFLQKHQSTFFLSAYE 307 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig16250.3593.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig16250.3593.1 >prot_H-paniculata_contig16250.3593.1 ID=prot_H-paniculata_contig16250.3593.1|Name=mRNA_H-paniculata_contig16250.3593.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=254bp VIKLKPSGDQFTYFLHYMGWNSRWDKWVIESDLMKEGAEAEEMQKQLKKEback to top mRNA from alignment at H-paniculata_contig16250:1083..2755+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig16250.3593.1 ID=mRNA_H-paniculata_contig16250.3593.1|Name=mRNA_H-paniculata_contig16250.3593.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1673bp|location=Sequence derived from alignment at H-paniculata_contig16250:1083..2755+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig16250:1083..2755+ >mRNA_H-paniculata_contig16250.3593.1 ID=mRNA_H-paniculata_contig16250.3593.1|Name=mRNA_H-paniculata_contig16250.3593.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1524bp|location=Sequence derived from alignment at H-paniculata_contig16250:1083..2755+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |