mRNA_H-paniculata_contig16219.3580.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig16219.3580.1
Unique NamemRNA_H-paniculata_contig16219.3580.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig16219.3580.1 vs. uniprot
Match: D7FIG3_ECTSI (Endo/exonuclease/phosphatase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FIG3_ECTSI)

HSP 1 Score: 111 bits (278), Expect = 1.430e-25
Identity = 60/127 (47.24%), Postives = 78/127 (61.42%), Query Frame = 1 
Query:  103 YPKHEASASGAYSLLAYGAVSADHPEHPDAFLPELMAIQAMREAHARD----SGQPVAVTKQEERFRERHPPQVPPAKHKAFGAWTSGYERMLEDVYRDRCSLSPQFTTKTNSFSGVIDHIFVSSGE 471
            YP  +A+ASG Y LL YG V   HPEHPD F+PE +  +   E   ++     G  +   ++  R R      V PA+H+  G W SG+   LED YRDR ++SP FTTKT+SFSG+IDHIFVS+GE
Sbjct:  421 YPSSQATASGVYCLLNYGCVPPTHPEHPDTFIPEWLKRKEQEEISRQELPKVGGGKLWTPRRTRRTRGAP---VVPAEHRPSGEWVSGFGGTLEDAYRDRGAVSPSFTTKTSSFSGIIDHIFVSTGE 544
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig16219.3580.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FIG3_ECTSI1.430e-2547.24Endo/exonuclease/phosphatase domain-containing pro... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig16219contigH-paniculata_contig16219:3819..5317 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionEndonuclease/exonuclease/phosphatase
Ec32 orthologEc-28_000160.1
Exons3
Model size482
Cds size480
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig16219.3580.1prot_H-paniculata_contig16219.3580.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig16219 3819..5317 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929295.7737606-CDS-H-paniculata_contig16219:3818..38731622929295.7737606-CDS-H-paniculata_contig16219:3818..3873Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16219 3819..3873 -
1691480804.5538473-CDS-H-paniculata_contig16219:3818..38731691480804.5538473-CDS-H-paniculata_contig16219:3818..3873Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16219 3819..3873 -
1622929295.789561-CDS-H-paniculata_contig16219:4376..45431622929295.789561-CDS-H-paniculata_contig16219:4376..4543Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16219 4377..4543 -
1691480804.569396-CDS-H-paniculata_contig16219:4376..45431691480804.569396-CDS-H-paniculata_contig16219:4376..4543Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16219 4377..4543 -
1622929295.8071463-CDS-H-paniculata_contig16219:5059..53171622929295.8071463-CDS-H-paniculata_contig16219:5059..5317Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16219 5060..5317 -
1691480804.5868523-CDS-H-paniculata_contig16219:5059..53171691480804.5868523-CDS-H-paniculata_contig16219:5059..5317Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16219 5060..5317 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig16219.3580.1

>prot_H-paniculata_contig16219.3580.1 ID=prot_H-paniculata_contig16219.3580.1|Name=mRNA_H-paniculata_contig16219.3580.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=160bp
MQARAQDALHRDNVPPPFTATTDSGIPILHCPVYYPKHEASASGAYSLLA
YGAVSADHPEHPDAFLPELMAIQAMREAHARDSGQPVAVTKQEERFRERH
PPQVPPAKHKAFGAWTSGYERMLEDVYRDRCSLSPQFTTKTNSFSGVIDH
IFVSSGEPGG
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mRNA from alignment at H-paniculata_contig16219:3819..5317-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig16219.3580.1 ID=mRNA_H-paniculata_contig16219.3580.1|Name=mRNA_H-paniculata_contig16219.3580.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1499bp|location=Sequence derived from alignment at H-paniculata_contig16219:3819..5317- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCAGGCGAGAGCGCAGGATGCTCTTCATCGCGACAACGTCCCTCCCCC
GTTCACGGCAACCACCGATTCCGGTATCCCGATCCTGCATTGCCCGGTCT
ACTACCCCAAGCACGAAGCTTCGGCTAGTGGGGCGTACTCTTTACTGGCA
TATGGGGCTGTATCGGCCGATCACCCCGAGCACCCCGATGCTTTCCTTCC
CGAGTTGATGGCGATACAGGCGATGAGGGAGGCACATGCCCGGGACAGTG
GTCAGCCGGTGAGGTTTCACTCGTAGCTGCCCTCATTTTGTGTCTGTTGT
AGTGTGGTTCCATCACTTGTTCCTCTTTTCAACGTTGTATTTTTGTTGGG
TTGATGTTGCCTTCACAGCTTTTGTGTTTCGGCTCGTGACGTTGAATTTT
AGTCGTTTCCGAGTTTTGTTGTTCCGTTTTTTTTTCTGTAGTGAACAAGC
AGATGAAGCAGATGAAGCAGATAATAATGCTGAACCGGGACGTGTGATTT
TAACAAAGTTATCCTTCAGCCCCCACGCAAGTCGTTCTGATATTTTTCAC
TTGGCTCATGAATGAGAGAATTATGATAAAATGTATCTGTATATTATTAT
TCGAAACAAAAATCAACAGATTACTTTTGTCCTGAGGAGGATGTTCGTGT
TTTATCTTAACATTGCGTGGGACCCATACTGCCCGCCTAGTACAAAATAA
ATGAATGAACTACTTCTCTACTTTTCGTTTCAGCTCTTGGCCAACTTGTG
TCGAACCAACAACCAATCAAGCAGGTGGCAGTGACAAAGCAGGAAGAGAG
GTTTAGGGAGCGTCATCCTCCGCAGGTCCCCCCCGCAAAGCACAAGGCAT
TTGGCGCTTGGACCAGCGGGTACGAGCGCATGCTAGAGGACGTCTACCGA
GATCGCTGCAGCTTGTCTCCGCAATTTACAACCAAGACCAAGTACGTACT
TGATACGGAACTGATGAGCGGGGGATGTTACTGCGGTTTATTGACAAAAC
TCCATAGCCGTGTTTGTGTTTTTTTTCGTGAAATCGCGAGCAGGAGGGTG
AAGTTGGCCACCCCAACCCGAACCCTATCCCTTACGCCAACTCTCAAGAC
CAAGGTATATATGTATATCCCTCTCTGTGTATAAAAAGTCCATCATGGTT
AGTGTCTAACTGGAGCCCGGTAGCGTTGGATGGGCCGAAACGCTGCGCCG
CTCCTCGGCCCTATAACGGCCGGAACGACCAAAGATTGTGTCGAGACTAT
TAGCGGCGTGACAGGAAAACCAAGGACGTACTCAAGCAACAATGCATTAT
TCGCCAACCTATCGGGGCGTTGTACTCATGAGTATTGCTCCCGAGCTGAT
GTTGTGCGTCTTGTCCCTAAATGCTACTTGATCCTGGTCCGTTCGTTACG
ATGCCTCTTCAATACGGTGCGTAACGACACGACGAACCTAACAGCTCGTT
TTCAGGTGTGATCGATCATATTTTCGTGTCGTCGGGGGAGCCGGGAGGG
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Coding sequence (CDS) from alignment at H-paniculata_contig16219:3819..5317-

>mRNA_H-paniculata_contig16219.3580.1 ID=mRNA_H-paniculata_contig16219.3580.1|Name=mRNA_H-paniculata_contig16219.3580.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=960bp|location=Sequence derived from alignment at H-paniculata_contig16219:3819..5317- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCAGGCGAGAGCGCAGGATGCTCTTCATCGCGACAACGTCCCTCCCCC
GTTCACGGCAACCACCGATTCCGGTATCCCGATCCTGCATTGCCCGGTCT
ACTACCCCAAGCACGAAGCTTCGGCTAGTGGGGCGTACTCTTTACTGGCA
TATGGGGCTGTATCGGCCGATCACCCCGAGCACCCCGATGCTTTCCTTCC
CGAGTTGATGGCGATACAGGCGATGAGGGAGGCACATGCCCGGGACAGTG
GTCAGCCGATGCAGGCGAGAGCGCAGGATGCTCTTCATCGCGACAACGTC
CCTCCCCCGTTCACGGCAACCACCGATTCCGGTATCCCGATCCTGCATTG
CCCGGTCTACTACCCCAAGCACGAAGCTTCGGCTAGTGGGGCGTACTCTT
TACTGGCATATGGGGCTGTATCGGCCGATCACCCCGAGCACCCCGATGCT
TTCCTTCCCGAGTTGATGGCGATACAGGCGATGAGGGAGGCACATGCCCG
GGACAGTGGTCAGCCGGTGGCAGTGACAAAGCAGGAAGAGAGGTTTAGGG
AGCGTCATCCTCCGCAGGTCCCCCCCGCAAAGCACAAGGCATTTGGCGCT
TGGACCAGCGGGTACGAGCGCATGCTAGAGGACGTCTACCGAGATCGCTG
CAGCTTGTCTCCGCAATTTACAACCAAGACCAAGTGGCAGTGACAAAGCA
GGAAGAGAGGTTTAGGGAGCGTCATCCTCCGCAGGTCCCCCCCGCAAAGC
ACAAGGCATTTGGCGCTTGGACCAGCGGGTACGAGCGCATGCTAGAGGAC
GTCTACCGAGATCGCTGCAGCTTGTCTCCGCAATTTACAACCAAGACCAA
CTCGTTTTCAGGTGTGATCGATCATATTTTCGTGTCGTCGGGGGAGCCGG
GAGGGCTCGTTTTCAGGTGTGATCGATCATATTTTCGTGTCGTCGGGGGA
GCCGGGAGGG
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