mRNA_H-paniculata_contig16213.3577.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig16213.3577.1
Unique NamemRNA_H-paniculata_contig16213.3577.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig16213.3577.1 vs. uniprot
Match: D7G4V6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4V6_ECTSI)

HSP 1 Score: 55.1 bits (131), Expect = 8.460e-8
Identity = 25/31 (80.65%), Postives = 28/31 (90.32%), Query Frame = 1 
Query:    7 RVLKPGQHYEVGLELSMPTSPINRRVGVFMV 99
            +VLK GQHY+VGLEL MPTS INRR+GVFMV
Sbjct:   90 KVLKAGQHYKVGLELQMPTSYINRRIGVFMV 120
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BLAST of mRNA_H-paniculata_contig16213.3577.1 vs. uniprot
Match: A0A6H5JEL4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEL4_9PHAE)

HSP 1 Score: 53.5 bits (127), Expect = 3.380e-7
Identity = 25/31 (80.65%), Postives = 27/31 (87.10%), Query Frame = 1 
Query:    7 RVLKPGQHYEVGLELSMPTSPINRRVGVFMV 99
            +VL  GQHY+VGLEL MPTS INRRVGVFMV
Sbjct:  170 KVLNAGQHYKVGLELQMPTSYINRRVGVFMV 200
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig16213.3577.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G4V6_ECTSI8.460e-880.65Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JEL4_9PHAE3.380e-780.65Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig16213contigH-paniculata_contig16213:5582..5692 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size111
Cds size111
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929295.4475107-CDS-H-paniculata_contig16213:5581..56921622929295.4475107-CDS-H-paniculata_contig16213:5581..5692Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16213 5582..5692 +
1691480804.4159281-CDS-H-paniculata_contig16213:5581..56921691480804.4159281-CDS-H-paniculata_contig16213:5581..5692Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16213 5582..5692 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig16213.3577.1prot_H-paniculata_contig16213.3577.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig16213 5582..5692 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig16213.3577.1

>prot_H-paniculata_contig16213.3577.1 ID=prot_H-paniculata_contig16213.3577.1|Name=mRNA_H-paniculata_contig16213.3577.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=37bp
RCRVLKPGQHYEVGLELSMPTSPINRRVGVFMVSKR*
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mRNA from alignment at H-paniculata_contig16213:5582..5692+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig16213.3577.1 ID=mRNA_H-paniculata_contig16213.3577.1|Name=mRNA_H-paniculata_contig16213.3577.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=111bp|location=Sequence derived from alignment at H-paniculata_contig16213:5582..5692+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGGTGCAGGGTGCTGAAGCCTGGGCAGCACTACGAGGTGGGACTGGAACT
GTCAATGCCTACCTCCCCCATCAATCGCCGAGTCGGTGTATTCATGGTAA
GTAAACGCTAG
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Coding sequence (CDS) from alignment at H-paniculata_contig16213:5582..5692+

>mRNA_H-paniculata_contig16213.3577.1 ID=mRNA_H-paniculata_contig16213.3577.1|Name=mRNA_H-paniculata_contig16213.3577.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=222bp|location=Sequence derived from alignment at H-paniculata_contig16213:5582..5692+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGGTGCAGGGTGCTGAAGCCTGGGCAGCACTACGAGGTGGGACTGGAACT
GTCAATGCCTACCTCCCCCATCAATCGCCGAGTCGGTGTATTCATGGTAA
GTAAACGCTAGCGGTGCAGGGTGCTGAAGCCTGGGCAGCACTACGAGGTG
GGACTGGAACTGTCAATGCCTACCTCCCCCATCAATCGCCGAGTCGGTGT
ATTCATGGTAAGTAAACGCTAG
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