mRNA_H-paniculata_contig16211.3575.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig16211.3575.1
Unique NamemRNA_H-paniculata_contig16211.3575.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig16211.3575.1 vs. uniprot
Match: A0A2G8RWY5_9APHY (Transcription factor n=1 Tax=Ganoderma sinense ZZ0214-1 TaxID=1077348 RepID=A0A2G8RWY5_9APHY)

HSP 1 Score: 89.7 bits (221), Expect = 4.880e-19
Identity = 46/82 (56.10%), Postives = 59/82 (71.95%), Query Frame = 1
Query:    1 KARLVVQGFSQVEDEDFF--ETSAPVSRMSTLRTVLSLAAEHDFELEGMDVDAAYSNAPVEEELFVKLPPEFSPLLPRHTVC 240
            KARLV QGFSQV   D+   ET APVSR+ ++RT+LSLAA HD+EL  MDV +AY N  +EE ++++LPP F+P    H VC
Sbjct: 1092 KARLVAQGFSQVPGRDYHDDETFAPVSRLPSIRTILSLAARHDWELRQMDVKSAYLNGILEETVYMRLPPGFAPPEQSHLVC 1173          
BLAST of mRNA_H-paniculata_contig16211.3575.1 vs. uniprot
Match: A0A2G8RW53_9APHY (Integrase catalytic domain-containing protein n=1 Tax=Ganoderma sinense ZZ0214-1 TaxID=1077348 RepID=A0A2G8RW53_9APHY)

HSP 1 Score: 84.3 bits (207), Expect = 3.850e-17
Identity = 44/82 (53.66%), Postives = 56/82 (68.29%), Query Frame = 1
Query:    1 KARLVVQGFSQVEDEDFF--ETSAPVSRMSTLRTVLSLAAEHDFELEGMDVDAAYSNAPVEEELFVKLPPEFSPLLPRHTVC 240
            KARLV QGFSQV   D+   ET APVSR+ ++RT+L+LAA HD+EL  MDV +AY N  +EE +++  PP FS     H VC
Sbjct: 1875 KARLVAQGFSQVPGRDYHDDETFAPVSRLPSIRTILALAARHDWELRQMDVKSAYLNGTLEETVYMHQPPSFSMPEQSHLVC 1956          
BLAST of mRNA_H-paniculata_contig16211.3575.1 vs. uniprot
Match: A0A060S825_PYCCI (CCHC-type domain-containing protein n=1 Tax=Pycnoporus cinnabarinus TaxID=5643 RepID=A0A060S825_PYCCI)

HSP 1 Score: 84.0 bits (206), Expect = 5.210e-17
Identity = 39/80 (48.75%), Postives = 60/80 (75.00%), Query Frame = 1
Query:    1 KARLVVQGFSQVEDEDFFETSAPVSRMSTLRTVLSLAAEHDFELEGMDVDAAYSNAPVEEELFVKLPPEFSPLLPRHTVC 240
            KARLV QG++Q+   DF ET APV+++S++RT+L+LAA +D+ELE M+V +AY N  ++EE++++ PP  +P    H VC
Sbjct: 1028 KARLVAQGYTQMPGVDFNETFAPVAKLSSIRTILALAARYDWELEQMEVKSAYLNGRLDEEIYMRQPPGSAPAGLEHLVC 1107          
BLAST of mRNA_H-paniculata_contig16211.3575.1 vs. uniprot
Match: Q2QRV1_ORYSJ (Retrotransposon protein, putative, Ty1-copia subclass n=1 Tax=Oryza sativa subsp. japonica TaxID=39947 RepID=Q2QRV1_ORYSJ)

HSP 1 Score: 83.2 bits (204), Expect = 9.770e-17
Identity = 41/78 (52.56%), Postives = 56/78 (71.79%), Query Frame = 1
Query:    1 KARLVVQGFSQVEDEDFFETSAPVSRMSTLRTVLSLAAEHDFELEGMDVDAAYSNAPVEEELFVKLPPEFS-PLLPRH 231
            KARLV QGF+Q+E  DF ET APV+R+ ++R +L+ AA HDF L  MDV +A+ N P+ E ++V+ PP F  P+LP H
Sbjct: 1185 KARLVAQGFTQIEGLDFDETFAPVARLESIRILLAYAAHHDFRLLQMDVKSAFLNRPISELVYVEQPPGFEDPMLPNH 1262          
BLAST of mRNA_H-paniculata_contig16211.3575.1 vs. uniprot
Match: Q6ATD3_ORYSJ (Putative polyprotein n=1 Tax=Oryza sativa subsp. japonica TaxID=39947 RepID=Q6ATD3_ORYSJ)

HSP 1 Score: 82.4 bits (202), Expect = 1.810e-16
Identity = 42/78 (53.85%), Postives = 55/78 (70.51%), Query Frame = 1
Query:    1 KARLVVQGFSQVEDEDFFETSAPVSRMSTLRTVLSLAAEHDFELEGMDVDAAYSNAPVEEELFVKLPPEFS-PLLPRH 231
            KARLV QGF+QVE  DF ET APV+R+ ++R +L+ AA HDF L  MDV +A+ N P+ E ++V+ PP F  P LP H
Sbjct: 1179 KARLVAQGFTQVEGLDFGETFAPVARLESIRILLAYAAHHDFRLFQMDVKSAFLNGPISELVYVEQPPGFKDPKLPNH 1256          
BLAST of mRNA_H-paniculata_contig16211.3575.1 vs. uniprot
Match: Q7XLY1_ORYSJ (OSJNBa0042I15.9 protein n=1 Tax=Oryza sativa subsp. japonica TaxID=39947 RepID=Q7XLY1_ORYSJ)

HSP 1 Score: 82.4 bits (202), Expect = 1.810e-16
Identity = 42/78 (53.85%), Postives = 55/78 (70.51%), Query Frame = 1
Query:    1 KARLVVQGFSQVEDEDFFETSAPVSRMSTLRTVLSLAAEHDFELEGMDVDAAYSNAPVEEELFVKLPPEFS-PLLPRH 231
            KARLV QGF+QVE  DF ET APV+R+ ++R +L+ AA HDF L  MDV +A+ N P+ E ++V+ PP F  P LP H
Sbjct: 1057 KARLVTQGFTQVEGLDFGETFAPVARLESIRILLAYAAHHDFRLFQMDVKSAFLNGPISELVYVEQPPGFEDPKLPNH 1134          
BLAST of mRNA_H-paniculata_contig16211.3575.1 vs. uniprot
Match: Q2RB82_ORYSJ (Retrotransposon protein, putative, unclassified n=1 Tax=Oryza sativa subsp. japonica TaxID=39947 RepID=Q2RB82_ORYSJ)

HSP 1 Score: 82.0 bits (201), Expect = 2.490e-16
Identity = 42/78 (53.85%), Postives = 55/78 (70.51%), Query Frame = 1
Query:    1 KARLVVQGFSQVEDEDFFETSAPVSRMSTLRTVLSLAAEHDFELEGMDVDAAYSNAPVEEELFVKLPPEFS-PLLPRH 231
            KARLV QGF+QVE  DF ET APV+R+ ++R +L+ AA HDF L  MDV +A+ N P+ E ++V+ PP F  P LP H
Sbjct:  953 KARLVAQGFTQVEGLDFGETFAPVARIESIRILLAYAAHHDFRLFHMDVKSAFLNGPISELVYVEQPPGFEDPKLPNH 1030          
BLAST of mRNA_H-paniculata_contig16211.3575.1 vs. uniprot
Match: A0A060S5X4_PYCCI (Integrase catalytic domain-containing protein n=1 Tax=Pycnoporus cinnabarinus TaxID=5643 RepID=A0A060S5X4_PYCCI)

HSP 1 Score: 81.6 bits (200), Expect = 3.320e-16
Identity = 38/80 (47.50%), Postives = 59/80 (73.75%), Query Frame = 1
Query:    1 KARLVVQGFSQVEDEDFFETSAPVSRMSTLRTVLSLAAEHDFELEGMDVDAAYSNAPVEEELFVKLPPEFSPLLPRHTVC 240
            KARLV QG++Q+   DF ET APV+++S++ T+L+L A +D+ELE MDV +AY N  ++EE++++ PP  +P   +H VC
Sbjct:  362 KARLVAQGYTQMPGVDFNETFAPVTKLSSICTILALTARYDWELEQMDVKSAYLNGRLDEEIYMRQPPGSAPAGLKHLVC 441          
BLAST of mRNA_H-paniculata_contig16211.3575.1 vs. uniprot
Match: Q7G6C9_ORYSJ (Putative copia-type pol polyprotein n=2 Tax=Oryza sativa subsp. japonica TaxID=39947 RepID=Q7G6C9_ORYSJ)

HSP 1 Score: 80.9 bits (198), Expect = 6.280e-16
Identity = 42/78 (53.85%), Postives = 54/78 (69.23%), Query Frame = 1
Query:    1 KARLVVQGFSQVEDEDFFETSAPVSRMSTLRTVLSLAAEHDFELEGMDVDAAYSNAPVEEELFVKLPPEFSPL-LPRH 231
            KARLV QGF+QVE  DF ET APV+R  ++R +L+ AA HDF L  MDV +A+ N P+ E ++V+ PP F  L LP H
Sbjct: 1081 KARLVAQGFTQVEGLDFGETFAPVARFESIRILLAYAAHHDFRLFQMDVKSAFLNGPISELVYVEQPPGFEDLKLPNH 1158          
BLAST of mRNA_H-paniculata_contig16211.3575.1 vs. uniprot
Match: Q75I79_ORYSJ (Retrotransposon protein, putative, unclassified n=2 Tax=Oryza sativa subsp. japonica TaxID=39947 RepID=Q75I79_ORYSJ)

HSP 1 Score: 80.5 bits (197), Expect = 8.560e-16
Identity = 41/78 (52.56%), Postives = 54/78 (69.23%), Query Frame = 1
Query:    1 KARLVVQGFSQVEDEDFFETSAPVSRMSTLRTVLSLAAEHDFELEGMDVDAAYSNAPVEEELFVKLPPEFS-PLLPRH 231
            KARLV QGF+QVE  DF ET APV R+ ++R +L+ AA HDF L  MDV +A+ N P+ + ++V+ PP F  P LP H
Sbjct: 1006 KARLVAQGFTQVEGLDFGETFAPVGRLESIRILLAYAAHHDFRLFQMDVKSAFLNGPISKLVYVEQPPGFEDPKLPNH 1083          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig16211.3575.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2G8RWY5_9APHY4.880e-1956.10Transcription factor n=1 Tax=Ganoderma sinense ZZ0... [more]
A0A2G8RW53_9APHY3.850e-1753.66Integrase catalytic domain-containing protein n=1 ... [more]
A0A060S825_PYCCI5.210e-1748.75CCHC-type domain-containing protein n=1 Tax=Pycnop... [more]
Q2QRV1_ORYSJ9.770e-1752.56Retrotransposon protein, putative, Ty1-copia subcl... [more]
Q6ATD3_ORYSJ1.810e-1653.85Putative polyprotein n=1 Tax=Oryza sativa subsp. j... [more]
Q7XLY1_ORYSJ1.810e-1653.85OSJNBa0042I15.9 protein n=1 Tax=Oryza sativa subsp... [more]
Q2RB82_ORYSJ2.490e-1653.85Retrotransposon protein, putative, unclassified n=... [more]
A0A060S5X4_PYCCI3.320e-1647.50Integrase catalytic domain-containing protein n=1 ... [more]
Q7G6C9_ORYSJ6.280e-1653.85Putative copia-type pol polyprotein n=2 Tax=Oryza ... [more]
Q75I79_ORYSJ8.560e-1652.56Retrotransposon protein, putative, unclassified n=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig16211contigH-paniculata_contig16211:5482..5736 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score75.1
Seed ortholog evalue1.8e-11
Seed eggNOG ortholog28532.XP_010526678.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.cysteine-rich RLK (RECEPTOR-like protein kinase) 8
EggNOG OGs37RIF@33090,3GBWZ@35493,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelStreptophyta
Best eggNOG OGNA|NA|NA
Exons1
Model size255
Cds size255
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929295.2882314-CDS-H-paniculata_contig16211:5481..57361622929295.2882314-CDS-H-paniculata_contig16211:5481..5736Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16211 5482..5736 -
1691480804.3410666-CDS-H-paniculata_contig16211:5481..57361691480804.3410666-CDS-H-paniculata_contig16211:5481..5736Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16211 5482..5736 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig16211.3575.1prot_H-paniculata_contig16211.3575.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig16211 5482..5736 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig16211.3575.1

>prot_H-paniculata_contig16211.3575.1 ID=prot_H-paniculata_contig16211.3575.1|Name=mRNA_H-paniculata_contig16211.3575.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=85bp
KARLVVQGFSQVEDEDFFETSAPVSRMSTLRTVLSLAAEHDFELEGMDVD
AAYSNAPVEEELFVKLPPEFSPLLPRHTVCAPPV*
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mRNA from alignment at H-paniculata_contig16211:5482..5736-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig16211.3575.1 ID=mRNA_H-paniculata_contig16211.3575.1|Name=mRNA_H-paniculata_contig16211.3575.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=255bp|location=Sequence derived from alignment at H-paniculata_contig16211:5482..5736- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAAGCGCGACTGGTGGTTCAAGGTTTTTCACAGGTGGAGGATGAAGATTT CTTTGAAACCAGTGCCCCCGTATCTCGCATGTCGACGTTACGTACTGTTT TAAGCCTCGCCGCCGAACATGATTTCGAATTAGAAGGCATGGATGTAGAT GCTGCGTATTCGAACGCCCCGGTAGAAGAAGAGCTGTTTGTTAAGCTCCC CCCCGAGTTTTCCCCCCTTCTCCCGAGACATACCGTTTGTGCGCCGCCTG TGTAA
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Coding sequence (CDS) from alignment at H-paniculata_contig16211:5482..5736-

>mRNA_H-paniculata_contig16211.3575.1 ID=mRNA_H-paniculata_contig16211.3575.1|Name=mRNA_H-paniculata_contig16211.3575.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=510bp|location=Sequence derived from alignment at H-paniculata_contig16211:5482..5736- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAAGCGCGACTGGTGGTTCAAGGTTTTTCACAGGTGGAGGATGAAGATTT
CTTTGAAACCAGTGCCCCCGTATCTCGCATGTCGACGTTACGTACTGTTT
TAAGCCTCGCCGCCGAACATGATTTCGAATTAGAAGGCATGGATGTAGAT
GCTGCGTATTCGAACGCCCCGGTAGAAGAAGAGCTGTTTGTTAAGCTCCC
CCCCGAGTTTTCCCCCCTTCTCCCGAGACATACCGTTTGTGCGCCGCCTG
TGTAAAAAGCGCGACTGGTGGTTCAAGGTTTTTCACAGGTGGAGGATGAA
GATTTCTTTGAAACCAGTGCCCCCGTATCTCGCATGTCGACGTTACGTAC
TGTTTTAAGCCTCGCCGCCGAACATGATTTCGAATTAGAAGGCATGGATG
TAGATGCTGCGTATTCGAACGCCCCGGTAGAAGAAGAGCTGTTTGTTAAG
CTCCCCCCCGAGTTTTCCCCCCTTCTCCCGAGACATACCGTTTGTGCGCC
GCCTGTGTAA
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