mRNA_H-paniculata_contig16211.3575.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig16211.3575.1 vs. uniprot
Match: A0A2G8RWY5_9APHY (Transcription factor n=1 Tax=Ganoderma sinense ZZ0214-1 TaxID=1077348 RepID=A0A2G8RWY5_9APHY) HSP 1 Score: 89.7 bits (221), Expect = 4.880e-19 Identity = 46/82 (56.10%), Postives = 59/82 (71.95%), Query Frame = 1
Query: 1 KARLVVQGFSQVEDEDFF--ETSAPVSRMSTLRTVLSLAAEHDFELEGMDVDAAYSNAPVEEELFVKLPPEFSPLLPRHTVC 240
KARLV QGFSQV D+ ET APVSR+ ++RT+LSLAA HD+EL MDV +AY N +EE ++++LPP F+P H VC
Sbjct: 1092 KARLVAQGFSQVPGRDYHDDETFAPVSRLPSIRTILSLAARHDWELRQMDVKSAYLNGILEETVYMRLPPGFAPPEQSHLVC 1173
BLAST of mRNA_H-paniculata_contig16211.3575.1 vs. uniprot
Match: A0A2G8RW53_9APHY (Integrase catalytic domain-containing protein n=1 Tax=Ganoderma sinense ZZ0214-1 TaxID=1077348 RepID=A0A2G8RW53_9APHY) HSP 1 Score: 84.3 bits (207), Expect = 3.850e-17 Identity = 44/82 (53.66%), Postives = 56/82 (68.29%), Query Frame = 1
Query: 1 KARLVVQGFSQVEDEDFF--ETSAPVSRMSTLRTVLSLAAEHDFELEGMDVDAAYSNAPVEEELFVKLPPEFSPLLPRHTVC 240
KARLV QGFSQV D+ ET APVSR+ ++RT+L+LAA HD+EL MDV +AY N +EE +++ PP FS H VC
Sbjct: 1875 KARLVAQGFSQVPGRDYHDDETFAPVSRLPSIRTILALAARHDWELRQMDVKSAYLNGTLEETVYMHQPPSFSMPEQSHLVC 1956
BLAST of mRNA_H-paniculata_contig16211.3575.1 vs. uniprot
Match: A0A060S825_PYCCI (CCHC-type domain-containing protein n=1 Tax=Pycnoporus cinnabarinus TaxID=5643 RepID=A0A060S825_PYCCI) HSP 1 Score: 84.0 bits (206), Expect = 5.210e-17 Identity = 39/80 (48.75%), Postives = 60/80 (75.00%), Query Frame = 1
Query: 1 KARLVVQGFSQVEDEDFFETSAPVSRMSTLRTVLSLAAEHDFELEGMDVDAAYSNAPVEEELFVKLPPEFSPLLPRHTVC 240
KARLV QG++Q+ DF ET APV+++S++RT+L+LAA +D+ELE M+V +AY N ++EE++++ PP +P H VC
Sbjct: 1028 KARLVAQGYTQMPGVDFNETFAPVAKLSSIRTILALAARYDWELEQMEVKSAYLNGRLDEEIYMRQPPGSAPAGLEHLVC 1107
BLAST of mRNA_H-paniculata_contig16211.3575.1 vs. uniprot
Match: Q2QRV1_ORYSJ (Retrotransposon protein, putative, Ty1-copia subclass n=1 Tax=Oryza sativa subsp. japonica TaxID=39947 RepID=Q2QRV1_ORYSJ) HSP 1 Score: 83.2 bits (204), Expect = 9.770e-17 Identity = 41/78 (52.56%), Postives = 56/78 (71.79%), Query Frame = 1
Query: 1 KARLVVQGFSQVEDEDFFETSAPVSRMSTLRTVLSLAAEHDFELEGMDVDAAYSNAPVEEELFVKLPPEFS-PLLPRH 231
KARLV QGF+Q+E DF ET APV+R+ ++R +L+ AA HDF L MDV +A+ N P+ E ++V+ PP F P+LP H
Sbjct: 1185 KARLVAQGFTQIEGLDFDETFAPVARLESIRILLAYAAHHDFRLLQMDVKSAFLNRPISELVYVEQPPGFEDPMLPNH 1262
BLAST of mRNA_H-paniculata_contig16211.3575.1 vs. uniprot
Match: Q6ATD3_ORYSJ (Putative polyprotein n=1 Tax=Oryza sativa subsp. japonica TaxID=39947 RepID=Q6ATD3_ORYSJ) HSP 1 Score: 82.4 bits (202), Expect = 1.810e-16 Identity = 42/78 (53.85%), Postives = 55/78 (70.51%), Query Frame = 1
Query: 1 KARLVVQGFSQVEDEDFFETSAPVSRMSTLRTVLSLAAEHDFELEGMDVDAAYSNAPVEEELFVKLPPEFS-PLLPRH 231
KARLV QGF+QVE DF ET APV+R+ ++R +L+ AA HDF L MDV +A+ N P+ E ++V+ PP F P LP H
Sbjct: 1179 KARLVAQGFTQVEGLDFGETFAPVARLESIRILLAYAAHHDFRLFQMDVKSAFLNGPISELVYVEQPPGFKDPKLPNH 1256
BLAST of mRNA_H-paniculata_contig16211.3575.1 vs. uniprot
Match: Q7XLY1_ORYSJ (OSJNBa0042I15.9 protein n=1 Tax=Oryza sativa subsp. japonica TaxID=39947 RepID=Q7XLY1_ORYSJ) HSP 1 Score: 82.4 bits (202), Expect = 1.810e-16 Identity = 42/78 (53.85%), Postives = 55/78 (70.51%), Query Frame = 1
Query: 1 KARLVVQGFSQVEDEDFFETSAPVSRMSTLRTVLSLAAEHDFELEGMDVDAAYSNAPVEEELFVKLPPEFS-PLLPRH 231
KARLV QGF+QVE DF ET APV+R+ ++R +L+ AA HDF L MDV +A+ N P+ E ++V+ PP F P LP H
Sbjct: 1057 KARLVTQGFTQVEGLDFGETFAPVARLESIRILLAYAAHHDFRLFQMDVKSAFLNGPISELVYVEQPPGFEDPKLPNH 1134
BLAST of mRNA_H-paniculata_contig16211.3575.1 vs. uniprot
Match: Q2RB82_ORYSJ (Retrotransposon protein, putative, unclassified n=1 Tax=Oryza sativa subsp. japonica TaxID=39947 RepID=Q2RB82_ORYSJ) HSP 1 Score: 82.0 bits (201), Expect = 2.490e-16 Identity = 42/78 (53.85%), Postives = 55/78 (70.51%), Query Frame = 1
Query: 1 KARLVVQGFSQVEDEDFFETSAPVSRMSTLRTVLSLAAEHDFELEGMDVDAAYSNAPVEEELFVKLPPEFS-PLLPRH 231
KARLV QGF+QVE DF ET APV+R+ ++R +L+ AA HDF L MDV +A+ N P+ E ++V+ PP F P LP H
Sbjct: 953 KARLVAQGFTQVEGLDFGETFAPVARIESIRILLAYAAHHDFRLFHMDVKSAFLNGPISELVYVEQPPGFEDPKLPNH 1030
BLAST of mRNA_H-paniculata_contig16211.3575.1 vs. uniprot
Match: A0A060S5X4_PYCCI (Integrase catalytic domain-containing protein n=1 Tax=Pycnoporus cinnabarinus TaxID=5643 RepID=A0A060S5X4_PYCCI) HSP 1 Score: 81.6 bits (200), Expect = 3.320e-16 Identity = 38/80 (47.50%), Postives = 59/80 (73.75%), Query Frame = 1
Query: 1 KARLVVQGFSQVEDEDFFETSAPVSRMSTLRTVLSLAAEHDFELEGMDVDAAYSNAPVEEELFVKLPPEFSPLLPRHTVC 240
KARLV QG++Q+ DF ET APV+++S++ T+L+L A +D+ELE MDV +AY N ++EE++++ PP +P +H VC
Sbjct: 362 KARLVAQGYTQMPGVDFNETFAPVTKLSSICTILALTARYDWELEQMDVKSAYLNGRLDEEIYMRQPPGSAPAGLKHLVC 441
BLAST of mRNA_H-paniculata_contig16211.3575.1 vs. uniprot
Match: Q7G6C9_ORYSJ (Putative copia-type pol polyprotein n=2 Tax=Oryza sativa subsp. japonica TaxID=39947 RepID=Q7G6C9_ORYSJ) HSP 1 Score: 80.9 bits (198), Expect = 6.280e-16 Identity = 42/78 (53.85%), Postives = 54/78 (69.23%), Query Frame = 1
Query: 1 KARLVVQGFSQVEDEDFFETSAPVSRMSTLRTVLSLAAEHDFELEGMDVDAAYSNAPVEEELFVKLPPEFSPL-LPRH 231
KARLV QGF+QVE DF ET APV+R ++R +L+ AA HDF L MDV +A+ N P+ E ++V+ PP F L LP H
Sbjct: 1081 KARLVAQGFTQVEGLDFGETFAPVARFESIRILLAYAAHHDFRLFQMDVKSAFLNGPISELVYVEQPPGFEDLKLPNH 1158
BLAST of mRNA_H-paniculata_contig16211.3575.1 vs. uniprot
Match: Q75I79_ORYSJ (Retrotransposon protein, putative, unclassified n=2 Tax=Oryza sativa subsp. japonica TaxID=39947 RepID=Q75I79_ORYSJ) HSP 1 Score: 80.5 bits (197), Expect = 8.560e-16 Identity = 41/78 (52.56%), Postives = 54/78 (69.23%), Query Frame = 1
Query: 1 KARLVVQGFSQVEDEDFFETSAPVSRMSTLRTVLSLAAEHDFELEGMDVDAAYSNAPVEEELFVKLPPEFS-PLLPRH 231
KARLV QGF+QVE DF ET APV R+ ++R +L+ AA HDF L MDV +A+ N P+ + ++V+ PP F P LP H
Sbjct: 1006 KARLVAQGFTQVEGLDFGETFAPVGRLESIRILLAYAAHHDFRLFQMDVKSAFLNGPISKLVYVEQPPGFEDPKLPNH 1083 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig16211.3575.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig16211.3575.1 >prot_H-paniculata_contig16211.3575.1 ID=prot_H-paniculata_contig16211.3575.1|Name=mRNA_H-paniculata_contig16211.3575.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=85bp KARLVVQGFSQVEDEDFFETSAPVSRMSTLRTVLSLAAEHDFELEGMDVDback to top mRNA from alignment at H-paniculata_contig16211:5482..5736- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig16211.3575.1 ID=mRNA_H-paniculata_contig16211.3575.1|Name=mRNA_H-paniculata_contig16211.3575.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=255bp|location=Sequence derived from alignment at H-paniculata_contig16211:5482..5736- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig16211:5482..5736- >mRNA_H-paniculata_contig16211.3575.1 ID=mRNA_H-paniculata_contig16211.3575.1|Name=mRNA_H-paniculata_contig16211.3575.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=510bp|location=Sequence derived from alignment at H-paniculata_contig16211:5482..5736- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |