mRNA_H-paniculata_contig16176.3557.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig16176.3557.1
Unique NamemRNA_H-paniculata_contig16176.3557.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig16176.3557.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig16176contigH-paniculata_contig16176:5430..5923 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size494
Cds size396
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929291.499712-UTR-H-paniculata_contig16176:5429..55271622929291.499712-UTR-H-paniculata_contig16176:5429..5527Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig16176 5430..5527 +
1691480803.410211-UTR-H-paniculata_contig16176:5429..55271691480803.410211-UTR-H-paniculata_contig16176:5429..5527Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig16176 5430..5527 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929291.5186453-CDS-H-paniculata_contig16176:5527..59231622929291.5186453-CDS-H-paniculata_contig16176:5527..5923Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16176 5528..5923 +
1691480803.4190583-CDS-H-paniculata_contig16176:5527..59231691480803.4190583-CDS-H-paniculata_contig16176:5527..5923Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16176 5528..5923 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig16176.3557.1prot_H-paniculata_contig16176.3557.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig16176 5528..5923 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig16176.3557.1

>prot_H-paniculata_contig16176.3557.1 ID=prot_H-paniculata_contig16176.3557.1|Name=mRNA_H-paniculata_contig16176.3557.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=132bp
MHSLGEEVHNYTSVFNLCALGTYAGLVCNSVIALQHLCQQPRRLLCLLSV
GYNFGASARRRDAPYITCYTTSTLPLQNIRYWRLFNVHRLFICCLFTYAS
SLLFLRYSAYSTVQDQHTAKERVTTDLRPNG*
back to top

mRNA from alignment at H-paniculata_contig16176:5430..5923+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig16176.3557.1 ID=mRNA_H-paniculata_contig16176.3557.1|Name=mRNA_H-paniculata_contig16176.3557.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=494bp|location=Sequence derived from alignment at H-paniculata_contig16176:5430..5923+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTGCAGCATATTATATGTTATTATTATATTTACAGTTTTTAACAGTAGTG
TAGCTCTACAGCAGTGCTGTATGTAGGATAGAGTAGCTGTCGTCGTCTAT
GCACTCACTAGGTGAAGAAGTGCATAATTATACAAGTGTCTTCAACTTGT
GTGCCTTGGGTACCTATGCGGGTCTTGTGTGTAATTCCGTAATCGCACTT
CAACACCTGTGTCAACAGCCTCGTCGTCTTCTTTGTCTGCTGTCCGTTGG
GTACAATTTTGGAGCTTCCGCCCGGCGTCGGGATGCGCCATACATTACTT
GCTATACTACTTCAACCCTACCCTTACAAAATATTCGATACTGGCGGTTG
TTTAACGTTCATCGTTTATTTATTTGTTGTTTATTTACGTATGCGTCCTC
TCTTCTATTTTTGCGATATTCCGCATACTCTACCGTGCAGGACCAGCACA
CAGCAAAGGAAAGAGTAACCACGGACCTACGCCCGAACGGGTAG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig16176:5430..5923+

>mRNA_H-paniculata_contig16176.3557.1 ID=mRNA_H-paniculata_contig16176.3557.1|Name=mRNA_H-paniculata_contig16176.3557.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=792bp|location=Sequence derived from alignment at H-paniculata_contig16176:5430..5923+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCACTCACTAGGTGAAGAAGTGCATAATTATACAAGTGTCTTCAACTT
GTGTGCCTTGGGTACCTATGCGGGTCTTGTGTGTAATTCCGTAATCGCAC
TTCAACACCTGTGTCAACAGCCTCGTCGTCTTCTTTGTCTGCTGTCCGTT
GGGTACAATTTTGGAGCTTCCGCCCGGCGTCGGGATGCGCCATACATTAC
TTGCTATACTACTTCAACCCTACCCTTACAAAATATTCGATACTGGCGGT
TGTTTAACGTTCATCGTTTATTTATTTGTTGTTTATTTACGTATGCGTCC
TCTCTTCTATTTTTGCGATATTCCGCATACTCTACCGTGCAGGACCAGCA
CACAGCAAAGGAAAGAGTAACCACGGACCTACGCCCGAACGGGTAGATGC
ACTCACTAGGTGAAGAAGTGCATAATTATACAAGTGTCTTCAACTTGTGT
GCCTTGGGTACCTATGCGGGTCTTGTGTGTAATTCCGTAATCGCACTTCA
ACACCTGTGTCAACAGCCTCGTCGTCTTCTTTGTCTGCTGTCCGTTGGGT
ACAATTTTGGAGCTTCCGCCCGGCGTCGGGATGCGCCATACATTACTTGC
TATACTACTTCAACCCTACCCTTACAAAATATTCGATACTGGCGGTTGTT
TAACGTTCATCGTTTATTTATTTGTTGTTTATTTACGTATGCGTCCTCTC
TTCTATTTTTGCGATATTCCGCATACTCTACCGTGCAGGACCAGCACACA
GCAAAGGAAAGAGTAACCACGGACCTACGCCCGAACGGGTAG
back to top