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Homology
BLAST of mRNA_H-paniculata_contig16163.3553.1 vs. uniprot
Match: D8LKD1_ECTSI (Aardvark n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKD1_ECTSI) HSP 1 Score: 200 bits (509), Expect = 2.530e-56 Identity = 110/178 (61.80%), Postives = 137/178 (76.97%), Query Frame = 1
Query: 1 RREYFDVLYTGLCGAHMAAAVVARGGIVADSKDGWLRKASALLKLVALACPIVKKGVGLLGKALQLADRTRMVDYLEQVAKASKNATHVSLVAEQTVRRLV-ETGRAEASECAKSLDALQAMENPSNEWLPAWLLEEASDDAANAPSADSECLLTSR*STSTAKARRAALSDGCTIIK 531
R EYFDVLY GLCGAH+AAAVVARGGIVA+SKDGWLRKASAL+++V LACP +K GV LLGKALQLA+R +M D++E VAK+S++ HVS +AEQT RLV E GRAEA E KSL+A++ +E+P++EWLP WLLEEA+ + L +R + T ARRAA+ DGCT+IK
Sbjct: 894 RGEYFDVLYRGLCGAHIAAAVVARGGIVAESKDGWLRKASALVRIVCLACPSIKPGVELLGKALQLAERDKMADHVEHVAKSSRSPRHVSSLAEQTALRLVFEEGRAEADE--KSLEAMRRLEHPTDEWLPVWLLEEAAVEGDQGDGGVVVAGLRARGAPGTETARRAAVVDGCTMIK 1069
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Taxonomic scope | Eukaryota |
| Seed ortholog score | 155.2 |
| Seed ortholog evalue | 2.2e-35 |
| Seed eggNOG ortholog | 2880.D8LKD1 |
| KEGG ko | ko:K10352 |
| KEGG Pathway | ko04530,map04530 |
| Hectar predicted targeting category | other localisation |
| EggNOG OGs | 2E3TK@1,2SATT@2759 |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
| BRITE | ko00000,ko00001,ko04147,ko04812 |
| Exons | 5 |
| Model size | 531 |
| Cds size | 423 |
| Stop | 1 |
| Start | 1 |
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig16163.3553.1 >prot_H-paniculata_contig16163.3553.1 ID=prot_H-paniculata_contig16163.3553.1|Name=mRNA_H-paniculata_contig16163.3553.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=141bp
MAAAVVARGGIVADSKDGWLRKASALLKLVALACPIVKKGVGLLGKALQL
ADRTRMVDYLEQVAKASKNATHVSLVAEQTVRRLVETGRAEASECAKSLD
ALQAMENPSNEWLPAWLLEEASDDAANAPSADSECLLTSR* back to topmRNA from alignment at H-paniculata_contig16163:520..4225- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-paniculata_contig16163.3553.1 ID=mRNA_H-paniculata_contig16163.3553.1|Name=mRNA_H-paniculata_contig16163.3553.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3706bp|location=Sequence derived from alignment at H-paniculata_contig16163:520..4225- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGGCGAGAGTATTTCGACGTGCTATACACAGGACTCTGCGGTGCACACAT
GGCGGCGGCTGTAGTAGCTCGAGGCGGGATCGTGGCGGACAGCAAAGATG
GCTGGTTGAGGAAGGTGATGTTGTGACATATAATATATATATATATATAT
ATATATTTCAAGTTTCTTTTGGGATTTCCAATGTGATCCGTACCCGTCGG
TCCGAAGGTGGCAGTGAGTGTAATCAGTGGTTCGGTTTACGTACCTTGTA
GAGGGCAGGAGTCCGTAAAATACTTACATTTAGTTCATGTTTTTTTGGGT
CCGTCAATTTTGATCGGTACCCGTCGGCCCGAATCTAGGAGTGAGCGTGA
ATATTGTTTCAGTTCACTTCTGTTGCATCTTATTGCGCGGTGGGGGCAGT
ACTCCATCCCACTCACTTGCCTGAAACGTAACATATGTGCTCAATGTGCT
GTCGGTTGTTACGCGACTACATGGAACAGCCTTAGACTCGATCGTATTTG
TGTTCTATGTTGAAAAGGTTTTTTGTTCGTGGGTTATCGCTAGTAGTCGT
ATGCTACTCCCCGTCCAAAAAACACCCATGCGCGAACACACAGTTTGTTG
TTTTGACACTAAAAACATTATGTAATCCCTCCTTTTAATGTTTTCTCTTT
TTGTTTTCTTGTGTTGCTGAACGATGGATGATGACATTAGGCAAGCGCGT
TGCTGAAGTTGGTGGCTTTGGCGTGTCCCATCGTGAAGAAAGGAGTGGGG
CTGCTCGGAAAAGCGTTGCAACTGGCCGACCGAACACGGATGGTTGATTA
CCTAGAGCAGGTGGAAATGTTTGATCGTTTTTGTAGTTAGGGCCGTTCTA
CTTGTTGTGTGTGTGTGTGTGTGTTTTTTCCCTTTATCCTCCGATTTTGT
TTTGGTATTTGAAGTTTTTTTCGATATATTTTCCGACGCATTTTCTCAGC
GTGTTATCAGGACAAACATGTCACCCATAGAAAATGATCATTTGGCGCTA
TGCAAAGGGTTCAGAAAGCATTGTGTCCGTTCGTCGAAGGTCGAAATGGC
TTTCGACGGTTACCGTAGATATTTCAACCGGTACCGGCAAGTGTCGGGTA
TGAAAAGGGTGACTGTGAGCGAACGTGGGCACGCTTAAACTGAGACTATG
GACGTTTGTGGTTTTCCACGGAATACCAGCGACAGAGAACCCATGAAGCT
ACAAGCCACACGTGAATCTGTCGCTGAATTGCAACTGATATCCTGATAAC
TTATCACCTCATCGGATATGAAGAGAAAAGCATCCAAGCCTCGTAAGATG
ATGCTTTTGAAAGAAAGGATGTATTCCCTCCATTTTGATGTCAACCCCTT
CGGGACACGGTACCCTGCGAAACATGAGTCAAGATACATGCAATTTTTGT
TGATATTAAGCATTTTTTTAGCGTTTTGAAGGACGGAGTGCCAAAAATCA
CGTTTGGGTGCCTCGAAACGGATGCTGCGTCCGTGCCCAGGTGTGACATA
AACTGTTGTCAATTTCTTGAACTCTGCTGACGCCGATCTCAGTCCAATCA
CCACCTGAAAAAAAAAACAGCGCAGAATTTAATACGTTAGGTAGCAAGTT
TTTCGCTCCAACGGTTGATTGTGTCCATGGTTTGACAGCTGCTCGCCTTC
ACTTTTGTATTGTCTTTTTTGTACACTACCGCAACATCCGGAAACATCGA
TAGCATTACCGGAGTGCGAACGTGTTTTCAAACGCCGTTATTTCGAGGAG
AAAGATTCATGCCCAACAACGGCACGCTGTTCGTTGTCAATGTCAAGTAA
TAATCAGCGCTGGACGTGCTTGTATGTCCGTCCGAAAACCCACATGAACC
ATAGGTGGCAAAGGCATCGAAAAATGCAACACACGTGAGCTTGGTGGCTG
AGCAGACCGTAAGACGTCTTGTCGAGACAGGAAGGGCCGAAGCGAGTGAG
TGTCTCAATGTCTCCCCCGATATCAGTAATAAACAGGGAAATATCAAAAA
GTGAAACGACCAATTTTTTCATATCGCTGTTGCACATCATGAAACGTGCT
CATTTCCTCCGCGTTTTGGGGAAGGGGAAGGATCAAACGCATCACAACAC
AAACACGCAGAAAACTCGGGGAGTTGTAGGACCCCGCTCGGTCGTTTCGA
TGGCTACTGATGAAAAGCGACAATTCTTAGGCACTTCGCTTCGTCTAAGA
ATTGGCCAGTCTCGGTTGTCCAATTCATGGGCAAAACGGGGCCCTGGGAC
CCCAAGAGTTGTTTTGCGTGTTTTTGTATTGATGAGATTGATCCTTCCCC
AAAACGCGGAAGAAATGAGAACGTTTCGTGGTGTGAAGGCGATGTGAAAA
AATTGGCCGTTTCACACTGAATTTTTTTTCTGTAGCCTGAAGTTTGAGAT
TTCCCTGTTATTAGAGCGCGGATTGATGCAGAGTAAGTTAGAACAGTCGG
CATGTCTCCTCCAATGAAACGTGATAATTTTTTATGGTGTAATTTGAATA
TTAAAAAATTGAGCTTGGGATTATTTATAGGACCGAATAAATCGATTTTG
AGAAGCATTTGAACAGAGACTTGAGGCCTTCTGGGGGAGGCTTGTTGGTG
TCAAACTGACCTCAAATTGAACATGGAAAGTTCGACGTATGTACTCTGTA
AGCTTGTTCGAATGAACTTAAATCAAGCAGTTCAGTACAGAATGAGGTCG
TAGAGTACAAGAGCATGCTAATATCTACATTTTATCCCACATATTAGTCT
AGTCGCTCAGACCCGCGTTCGAGGACAGGAATTCCTCGTTTGATCGCGGT
TCTGCATGATTGTGCTAAAAGAGCCGAATAATACAAATAACAAGAAAGCC
ATACATTACTACTAAAACAAATACCAGTCCTTTGGCAGTACTGTACGTTG
TAGGGGTTGGGGCATGGCTGCTTCCCTCGGTGTCAACTGACAGTCTGTTT
GGTGCCACCCCACGCTCTGTGTGTTCCTCCGGCGATGGCGATGCAACCAA
TCAAGGTGCCAAATCGCTCGATGCCTTGCAGGCAATGGAAAATCCGTCCA
ACGAGTGGCTACCAGCGTGGCTTCTGGAAGAAGCTAGCGACGATGCAGCG
AATGCACCAAGTGCGGACAGTGAATGTTTGCTTACTTCGCGTTGTGGACC
TGTCTGAATTTCGCTATTTTTGTTTTTCGTCCTGTCTGGATGACTGTGTG
CTAAATTGCGTTGGTGGCTAGCTGCTGTCGAGCAGCGTTGGAATTATGCA
GGAGAGGTCAGTAGATTTAGGTGGAACGGAAACAAGATGCCCAAAGATTT
AAAGATTTCGGATCGTGGTTGTGGCAAGCTCCCAAGGTAATGTTCACGTT
CCAAGCCCCCTTGGTGTTGGAATCGATCGATAGACAGAGTACGAATGTCC
CTCCTTCGCATATTCTTGGGAGTGTGGAATAATCCGTACATATTCGAGCG
TGTACGTAAACGGCCCTCATCTGTTTTCAATTTAAAATGATTGGTTCATG
ACGTGAAGGTGCCGCTCTGCACGAAAAAGAGTGAGGTGATGGATGTATTG
TCATTGTTTTTTGTTTTAAACGTGTACACGTATCTCACGGTGTCATTCCC
CACCGTCTTCGTGTACCATGGTTACTATTGCAATGCTATTGCAGGATCTA
CTAGCACGGCCAAAGCTAGGAGGGCGGCGCTGTCAGACGGGTGCACTATT
ATCAAG back to topCoding sequence (CDS) from alignment at H-paniculata_contig16163:520..4225- >mRNA_H-paniculata_contig16163.3553.1 ID=mRNA_H-paniculata_contig16163.3553.1|Name=mRNA_H-paniculata_contig16163.3553.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=846bp|location=Sequence derived from alignment at H-paniculata_contig16163:520..4225- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCGGCGGCTGTAGTAGCTCGAGGCGGGATCGTGGCGGACAGCAAAGA
TGGCTGGTTGAGGAAGATGGCGGCGGCTGTAGTAGCTCGAGGCGGGATCG
TGGCGGACAGCAAAGATGGCTGGTTGAGGAAGGCAAGCGCGTTGCTGAAG
TTGGTGGCTTTGGCGTGTCCCATCGTGAAGAAAGGAGTGGGGCTGCTCGG
AAAAGCGTTGCAACTGGCCGACCGAACACGGATGGTTGATTACCTAGAGC
AGGCAAGCGCGTTGCTGAAGTTGGTGGCTTTGGCGTGTCCCATCGTGAAG
AAAGGAGTGGGGCTGCTCGGAAAAGCGTTGCAACTGGCCGACCGAACACG
GATGGTTGATTACCTAGAGCAGGTGGCAAAGGCATCGAAAAATGCAACAC
ACGTGAGCTTGGTGGCTGAGCAGACCGTAAGACGTCTTGTCGAGACAGGA
AGGGCCGAAGCGAGTGAGTGTGGCAAAGGCATCGAAAAATGCAACACACG
TGAGCTTGGTGGCTGAGCAGACCGTAAGACGTCTTGTCGAGACAGGAAGG
GCCGAAGCGAGTGAGTGTGCCAAATCGCTCGATGCCTTGCAGGCAATGGA
AAATCCGTCCAACGAGTGGCTACCAGCGTGGCTTCTGGAAGAAGCTAGCG
ACGATGCAGCGAATGCACCAAGTGCGGACAGTGAATGTTTGCTTACTTCG
CGTTGTGCCAAATCGCTCGATGCCTTGCAGGCAATGGAAAATCCGTCCAA
CGAGTGGCTACCAGCGTGGCTTCTGGAAGAAGCTAGCGACGATGCAGCGA
ATGCACCAAGTGCGGACAGTGAATGTTTGCTTACTTCGCGTTGAGA back to top
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