mRNA_H-paniculata_contig16130.3537.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig16130.3537.1
Unique NamemRNA_H-paniculata_contig16130.3537.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig16130.3537.1 vs. uniprot
Match: A0A6H5JQ42_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQ42_9PHAE)

HSP 1 Score: 197 bits (501), Expect = 1.690e-56
Identity = 96/112 (85.71%), Postives = 103/112 (91.96%), Query Frame = 1
Query:    1 IGQARASFEPVLDSLRLRTVHVMKRLFFVVEHMLKAEGMQMSDTHQKPFSFIVKRVYENFVEKSADECLTRCRDDLTTLTRFVTWDLHERSAGALRRSLPDSSMVQIYSLAV 336
            + +ARASFEP LD+LR+RTVHVMKRLF VVEHMLK++GMQMSDTHQKPFSFIVKRVYE FVEK+ DE L RCRDDLT LTRFVTWDLHERSAGALRRSLPDSSMV IYSLAV
Sbjct:  333 VDKARASFEPTLDALRVRTVHVMKRLFGVVEHMLKSDGMQMSDTHQKPFSFIVKRVYEKFVEKAVDETLARCRDDLTALTRFVTWDLHERSAGALRRSLPDSSMVHIYSLAV 444          
BLAST of mRNA_H-paniculata_contig16130.3537.1 vs. uniprot
Match: D8LDP8_ECTSI (ARC5, dynamin-related protein involved in plastid division n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDP8_ECTSI)

HSP 1 Score: 194 bits (493), Expect = 3.510e-55
Identity = 94/111 (84.68%), Postives = 101/111 (90.99%), Query Frame = 1
Query:    1 IGQARASFEPVLDSLRLRTVHVMKRLFFVVEHMLKAEGMQMSDTHQKPFSFIVKRVYENFVEKSADECLTRCRDDLTTLTRFVTWDLHERSAGALRRSLPDSSMVQIYSLA 333
            + +AR SFEP LD+LR+RTVHVMKRLF VVEHMLK++GMQMSDTHQKPFSFIVKRVYE FVEK+ DE L RCRDDLT LTRFVTWDLHERSAGALRRSLPDSSMV IYSLA
Sbjct:  573 VDKARTSFEPTLDALRVRTVHVMKRLFGVVEHMLKSDGMQMSDTHQKPFSFIVKRVYEKFVEKAVDETLARCRDDLTALTRFVTWDLHERSAGALRRSLPDSSMVHIYSLA 683          
BLAST of mRNA_H-paniculata_contig16130.3537.1 vs. uniprot
Match: A0A835Z2U6_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z2U6_9STRA)

HSP 1 Score: 180 bits (456), Expect = 5.980e-52
Identity = 83/114 (72.81%), Postives = 100/114 (87.72%), Query Frame = 1
Query:    1 IGQARASFEPVLDSLRLRTVHVMKRLFFVVEHMLKAEGMQMSDTHQKPFSFIVKRVYENFVEKSADECLTRCRDDLTTLTRFVTWDLHERSAGALRRSLPDSSMVQIYSLAVSQ 342
            + +AR  F+P+L+SLR+R VHV+KRLF VVEHMLK EG+ MS++HQKPFSFIV+R+YENF+E S D+CL RCRDDL  LTRFVTWDL+ERS+GAL RSLPD+SMVQIYSLAV Q
Sbjct:  234 VEKARLGFDPLLESLRVRAVHVLKRLFAVVEHMLKREGLSMSESHQKPFSFIVRRIYENFIEASIDDCLVRCRDDLKALTRFVTWDLNERSSGALHRSLPDTSMVQIYSLAVEQ 347          
BLAST of mRNA_H-paniculata_contig16130.3537.1 vs. uniprot
Match: A0A835Z9B7_9STRA (Dynamin-type G domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9B7_9STRA)

HSP 1 Score: 168 bits (426), Expect = 3.930e-46
Identity = 82/128 (64.06%), Postives = 99/128 (77.34%), Query Frame = 1
Query:    1 IGQARASFEPVLDSLRLRTVHVMKRLFFVVEHMLKAEGMQMSDTHQKPFSFIVKRVYENFVEKSADECLTRCRDDLT--------------TLTRFVTWDLHERSAGALRRSLPDSSMVQIYSLAVSQ 342
            + +AR  F+P+L+SLR+R VHV++RLF VVEHMLK EG+ MS++HQKPFSFIV+R+YENF+E S D+CL RCRDDL                LTRFVTWDL ERS+GAL RSLPD+SMVQIYSLAV Q
Sbjct:  543 VEKARLGFDPLLESLRVRAVHVLRRLFAVVEHMLKREGLTMSESHQKPFSFIVRRIYENFIEASIDDCLVRCRDDLAXXXXXXXXXXXXXKALTRFVTWDLSERSSGALHRSLPDTSMVQIYSLAVEQ 670          
BLAST of mRNA_H-paniculata_contig16130.3537.1 vs. uniprot
Match: A0A835YPI8_9STRA (Dynamin-type G domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YPI8_9STRA)

HSP 1 Score: 165 bits (417), Expect = 6.190e-45
Identity = 76/111 (68.47%), Postives = 94/111 (84.68%), Query Frame = 1
Query:    1 IGQARASFEPVLDSLRLRTVHVMKRLFFVVEHMLKAEGMQMSDTHQKPFSFIVKRVYENFVEKSADECLTRCRDDLTTLTRFVTWDLHERSAGALRRSLPDSSMVQIYSLA 333
            + +AR  F+P+L+SLR+R VHV+KR+F VVEHMLK +G+ MS+ HQKPFSFIV+R+YENF+E S D+CL RCRDDL  LTRFVTWDL ERS+GAL RSLPD++ VQI SLA
Sbjct:  558 VEKARLGFDPLLESLRVRAVHVLKRVFAVVEHMLKRDGLAMSEGHQKPFSFIVRRIYENFIEASVDDCLVRCRDDLKALTRFVTWDLGERSSGALHRSLPDTTTVQICSLA 668          
BLAST of mRNA_H-paniculata_contig16130.3537.1 vs. uniprot
Match: A0A4D9DCK2_9STRA (Dynamin-type G domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9DCK2_9STRA)

HSP 1 Score: 151 bits (382), Expect = 3.380e-40
Identity = 66/110 (60.00%), Postives = 89/110 (80.91%), Query Frame = 1
Query:    1 IGQARASFEPVLDSLRLRTVHVMKRLFFVVEHMLKAEGMQMSDTHQKPFSFIVKRVYENFVEKSADECLTRCRDDLTTLTRFVTWDLHERSAGALRRSLPDSSMVQIYSL 330
            + +AR+SFEP+L++LR RT H+MKRL+ + E ML+  G  + +TH +PF  IV+R+YENFV K+ D+CL RCRDDL  LTRFVTWDLHERSAGAL+RSLP S ++Q+Y++
Sbjct:  605 VEKARSSFEPLLEALRHRTTHIMKRLYPITEFMLQRNGKGLEETHHRPFQEIVRRIYENFVYKTVDDCLVRCRDDLKALTRFVTWDLHERSAGALQRSLPQSHLIQVYTM 714          
BLAST of mRNA_H-paniculata_contig16130.3537.1 vs. uniprot
Match: A0A7S3UW64_HETAK (Hypothetical protein (Fragment) n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UW64_HETAK)

HSP 1 Score: 134 bits (336), Expect = 5.310e-34
Identity = 56/116 (48.28%), Postives = 87/116 (75.00%), Query Frame = 1
Query:    1 IGQARASFEPVLDSLRLRTVHVMKRLFFVVEHMLKAEGMQMSDTHQKPFSFIVKRVYENFVEKSADECLTRCRDDLTTLTRFVTWDLHERSAGALRRSLPDSSMVQIYSLAVSQDR 348
            + +A+  FEP+L +LR R  H+M+RLF +  HM+ AEG+ ++D +Q+PF+ ++++VY  FV+++ D  + +CR DL  +TRFVTWDLHER  GAL+RSLPD+ MV+IYS+ + + R
Sbjct:  532 VEKAKQGFEPLLQALRHRATHIMRRLFPLARHMMMAEGLTLADPYQRPFNAVLEKVYTQFVDETIDNAIDQCRYDLKAITRFVTWDLHERGTGALQRSLPDNQMVEIYSMVMGRGR 647          
BLAST of mRNA_H-paniculata_contig16130.3537.1 vs. uniprot
Match: B7G2X3_PHATC (Predicted protein n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7G2X3_PHATC)

HSP 1 Score: 108 bits (271), Expect = 3.090e-25
Identity = 56/112 (50.00%), Postives = 82/112 (73.21%), Query Frame = 1
Query:    1 IGQARASFEPVLDSLRLRTVHVMKRLFFVVEHMLKAEGMQMS--DTHQKP-FSFIVKRVYENFVEKSADECLTRCRDDLTTLTRFVTWDLHERSAGALRRSLPDSS-MVQIY 324
            + +AR SFEP+L +L++R  HVM+RL  V E+M++ EG   +  D  Q P F  +++ +YE FV+K AD  ++RCRDDLT++TR+VTW+L ERS+GAL R+LPD + MV +Y
Sbjct:  526 LEKARISFEPLLWALQMRMAHVMERLCPVTEYMIR-EGRDQNAMDISQNPQFRQLIRTIYEKFVQKCADSAMSRCRDDLTSITRYVTWNLDERSSGALTRALPDQTDMVSVY 636          
BLAST of mRNA_H-paniculata_contig16130.3537.1 vs. uniprot
Match: A0A7S0CK04_9STRA (Hypothetical protein n=2 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0CK04_9STRA)

HSP 1 Score: 107 bits (267), Expect = 1.060e-24
Identity = 60/142 (42.25%), Postives = 87/142 (61.27%), Query Frame = 1
Query:    1 IGQARASFEPVLDSLRLRTVHVMKRLFFVVEHMLK---------AEGMQMS-------------------DTHQKP-FSFIVKRVYENFVEKSADECLTRCRDDLTTLTRFVTWDLHERSAGALRRSLPDS-SMVQIYSLAV 336
            + +AR +F+P+L++LRLR  HVM +L  V E+ML+         A G + S                   D  Q P F  +V+ +++NF++K++D  ++RCRDDL +LT+FVTWDLHERS GALRRSLPD   +V +Y +AV
Sbjct:  406 LEKARVTFDPLLEALRLRCTHVMSKLCSVSEYMLQHKRERNYYAAGGNEASNFSGSASTARTNAINRKSLDLTQSPQFRQLVRTIFDNFLQKTSDSAMSRCRDDLVSLTKFVTWDLHERSGGALRRSLPDQMDLVAVYRVAV 547          
BLAST of mRNA_H-paniculata_contig16130.3537.1 vs. uniprot
Match: A0A7S2UD37_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UD37_9STRA)

HSP 1 Score: 107 bits (267), Expect = 1.090e-24
Identity = 57/137 (41.61%), Postives = 81/137 (59.12%), Query Frame = 1
Query:    1 IGQARASFEPVLDSLRLRTVHVMKRLFFVVEHMLKAE-----------------------GMQMSDTHQKP-FSFIVKRVYENFVEKSADECLTRCRDDLTTLTRFVTWDLHERSAGALRRSLPDSS-MVQIYSLAV 336
            + +A+ SF+P+L++L+ R  HVM RL  V +HM+                          G   +D  Q P F  +++ ++E FV+K +D  ++RCRDDLT LTRFVTWDLHER  GALRRSLPD + +V +Y +AV
Sbjct:  672 LEKAQISFDPLLEALKSRVTHVMSRLCPVGQHMINQRKERKLSSFGYSFEDRVNSHDNSGGDSATDVTQNPQFQQLIQAIFEEFVQKCSDSAMSRCRDDLTALTRFVTWDLHERGGGALRRSLPDQTDIVSVYQVAV 808          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig16130.3537.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JQ42_9PHAE1.690e-5685.71Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LDP8_ECTSI3.510e-5584.68ARC5, dynamin-related protein involved in plastid ... [more]
A0A835Z2U6_9STRA5.980e-5272.81Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A835Z9B7_9STRA3.930e-4664.06Dynamin-type G domain-containing protein n=1 Tax=T... [more]
A0A835YPI8_9STRA6.190e-4568.47Dynamin-type G domain-containing protein n=1 Tax=T... [more]
A0A4D9DCK2_9STRA3.380e-4060.00Dynamin-type G domain-containing protein n=2 Tax=M... [more]
A0A7S3UW64_HETAK5.310e-3448.28Hypothetical protein (Fragment) n=2 Tax=Heterosigm... [more]
B7G2X3_PHATC3.090e-2550.00Predicted protein n=1 Tax=Phaeodactylum tricornutu... [more]
A0A7S0CK04_9STRA1.060e-2442.25Hypothetical protein n=2 Tax=Proboscia inermis Tax... [more]
A0A7S2UD37_9STRA1.090e-2441.61Hypothetical protein n=1 Tax=Attheya septentrional... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig16130contigH-paniculata_contig16130:5219..5812 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score194.5
Seed ortholog evalue2.8e-47
Seed eggNOG ortholog2880.D8LDP8
Preferred nameARC5
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0003924,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005777,GO:0006996,GO:0007031,GO:0007623,GO:0008017,GO:0008092,GO:0008150,GO:0009507,GO:0009526,GO:0009527,GO:0009536,GO:0009657,GO:0009658,GO:0009707,GO:0009941,GO:0009987,GO:0010020,GO:0015631,GO:0016020,GO:0016043,GO:0016462,GO:0016559,GO:0016787,GO:0016817,GO:0016818,GO:0017111,GO:0019867,GO:0031090,GO:0031967,GO:0031968,GO:0031969,GO:0031975,GO:0042170,GO:0042579,GO:0042802,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043572,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0048285,GO:0048511,GO:0071840,GO:0098588,GO:0098805
EggNOG free text desc.mitochondrial fission
EggNOG OGsCOG0699@1,KOG0446@2759
COG Functional cat.I
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size354
Cds size354
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929289.4974456-CDS-H-paniculata_contig16130:5218..54241622929289.4974456-CDS-H-paniculata_contig16130:5218..5424Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16130 5219..5424 -
1691480802.5604427-CDS-H-paniculata_contig16130:5218..54241691480802.5604427-CDS-H-paniculata_contig16130:5218..5424Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16130 5219..5424 -
1622929289.5258107-CDS-H-paniculata_contig16130:5664..58121622929289.5258107-CDS-H-paniculata_contig16130:5664..5812Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16130 5665..5812 -
1691480802.5704424-CDS-H-paniculata_contig16130:5664..58121691480802.5704424-CDS-H-paniculata_contig16130:5664..5812Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16130 5665..5812 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig16130.3537.1prot_H-paniculata_contig16130.3537.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig16130 5219..5812 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig16130.3537.1

>prot_H-paniculata_contig16130.3537.1 ID=prot_H-paniculata_contig16130.3537.1|Name=mRNA_H-paniculata_contig16130.3537.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=118bp
IGQARASFEPVLDSLRLRTVHVMKRLFFVVEHMLKAEGMQMSDTHQKPFS
FIVKRVYENFVEKSADECLTRCRDDLTTLTRFVTWDLHERSAGALRRSLP
DSSMVQIYSLAVSQDRP*
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mRNA from alignment at H-paniculata_contig16130:5219..5812-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig16130.3537.1 ID=mRNA_H-paniculata_contig16130.3537.1|Name=mRNA_H-paniculata_contig16130.3537.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=594bp|location=Sequence derived from alignment at H-paniculata_contig16130:5219..5812- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATTGGGCAGGCCCGTGCTTCGTTCGAGCCTGTCCTGGACTCTTTGCGGCT ACGGACTGTGCACGTAATGAAGCGATTGTTCTTCGTGGTGGAGCACATGC TCAAGGCGGAAGGAATGCAAATGAGCGACACTCACCAGAAACCCTTCAGT GAGTTCGTCCTTTCTCTGTTATTTTTCTTGCCGGTTGTTGTATTTCGCCT GTTTTTTTTCGATGGTAACATGTTGGAGCTAATTTTTCAAATTTGCCGTT ATAATATTCAAAACACACACACACATACATGTATGTATATGTATATATAG ACCTTGCCATTTCTGTTTATCTCGTGCCGAATATTATCAGTAGTATTATT ATCAATGTTTAACTTTTTTTTTTTTTTTTTAACTCAAGGTTTCATCGTAA AGAGGGTTTACGAAAACTTCGTGGAAAAGTCTGCGGACGAGTGCCTGACG CGCTGTCGCGACGACCTCACAACCCTCACCCGCTTTGTCACCTGGGACCT GCACGAGAGGTCAGCCGGTGCCCTGCGCCGCTCCCTGCCCGACAGCTCGA TGGTACAGATTTACTCTCTCGCGGTAAGTCAAGACCGTCCATAA
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Coding sequence (CDS) from alignment at H-paniculata_contig16130:5219..5812-

>mRNA_H-paniculata_contig16130.3537.1 ID=mRNA_H-paniculata_contig16130.3537.1|Name=mRNA_H-paniculata_contig16130.3537.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=708bp|location=Sequence derived from alignment at H-paniculata_contig16130:5219..5812- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATTGGGCAGGCCCGTGCTTCGTTCGAGCCTGTCCTGGACTCTTTGCGGCT
ACGGACTGTGCACGTAATGAAGCGATTGTTCTTCGTGGTGGAGCACATGC
TCAAGGCGGAAGGAATGCAAATGAGCGACACTCACCAGAAACCCTTCAAT
TGGGCAGGCCCGTGCTTCGTTCGAGCCTGTCCTGGACTCTTTGCGGCTAC
GGACTGTGCACGTAATGAAGCGATTGTTCTTCGTGGTGGAGCACATGCTC
AAGGCGGAAGGAATGCAAATGAGCGACACTCACCAGAAACCCTTCAGTTT
CATCGTAAAGAGGGTTTACGAAAACTTCGTGGAAAAGTCTGCGGACGAGT
GCCTGACGCGCTGTCGCGACGACCTCACAACCCTCACCCGCTTTGTCACC
TGGGACCTGCACGAGAGGTCAGCCGGTGCCCTGCGCCGCTCCCTGCCCGA
CAGCTCGATGGTACAGATTTACTCTCTCGCGGTAAGTCAAGACCGTCCAT
AAGTTTCATCGTAAAGAGGGTTTACGAAAACTTCGTGGAAAAGTCTGCGG
ACGAGTGCCTGACGCGCTGTCGCGACGACCTCACAACCCTCACCCGCTTT
GTCACCTGGGACCTGCACGAGAGGTCAGCCGGTGCCCTGCGCCGCTCCCT
GCCCGACAGCTCGATGGTACAGATTTACTCTCTCGCGGTAAGTCAAGACC
GTCCATAA
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