prot_H-paniculata_contig160.3483.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig160.3483.1
Unique Nameprot_H-paniculata_contig160.3483.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length263
Homology
BLAST of mRNA_H-paniculata_contig160.3483.1 vs. uniprot
Match: D7G8Q6_ECTSI (Mediator of RNA polymerase II transcription subunit 20 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8Q6_ECTSI)

HSP 1 Score: 219 bits (557), Expect = 1.210e-68
Identity = 111/200 (55.50%), Postives = 141/200 (70.50%), Query Frame = 0
Query:   64 MKFGVNVAAPFAGMKRDEGSAYPYAKQYCVRRSDLGTRLLVVQEMAKESTAPAPATATPRAADAEGVASRKFCEGMLVHVLEGGSELEA-SLASKTALVSRLKAVVDGHVYRLGDFFIRVGSCRKGAVYKGLVLEVEYMPTCRVVDGLAMITAFLPNVDESGRFIAASDLRDPLVFGRDPMYSRKHTALQTTDLFNRVFS 262
            MK GVN+AAPF GMK++EG  YP+AKQ+C+RR+D GTR++VVQEMA+E +      A P              EG L HVLEG   LEA   A++  LV+R+KA ++GH YRLGDF +RVG C+KGAV++GL LEVEY P  RV DGL+MI AF+P++D+ G F A SDL+D  +FGR P +S KH ALQ TDLFN VF+
Sbjct:    1 MKHGVNLAAPFVGMKKEEGIEYPFAKQFCIRRNDRGTRVMVVQEMAEEPSY----AAVP--------------EGKLTHVLEGEDPLEAMGAAARAGLVTRIKASIEGHAYRLGDFVVRVGKCKKGAVFRGLALEVEYRPCNRVADGLSMIEAFIPSIDQDGTFTAVSDLQDLAMFGRGPQFSVKHNALQITDLFNEVFA 182          
BLAST of mRNA_H-paniculata_contig160.3483.1 vs. uniprot
Match: A0A835Z8G4_9STRA (Mediator of RNA polymerase II transcription subunit 20 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8G4_9STRA)

HSP 1 Score: 117 bits (293), Expect = 8.870e-29
Identity = 76/181 (41.99%), Postives = 96/181 (53.04%), Query Frame = 0
Query:   64 MKFGVNVAAPFAGM-KRDEGSAYPYAKQYCVRRSDLGTRLLVVQEMAKESTAPAPATATPRAADAEGVASRKFCEGMLVHVLEGGSELEASLASKTALVSRLKAVVDGHVYRLGDFFIRVGSCRKGAVYKGLVLEVEYMPTCRVVDGLAMITAFLPNVDESGRFIAASDLRDPLVFGRDPM 243
            M+FGVN A  F G   R + + YP+ +   VRRSD   R+ +VQEM K            RAA  E              VL G   LEA +A K    +RLKAV++G  + LGDF +RVG+CRKG+ Y+GL +EVEY P   V DG AMI A LP +D +G F  A     PL    +PM
Sbjct:    1 MRFGVNTAVAFIGEGARQQDATYPFDRINVVRRSDEPGRVCLVQEMGK------------RAATLE-------------QVLVGDDALEADMAKKVPYPTRLKAVIEGSAFSLGDFTVRVGTCRKGSTYRGLAMEVEYHPCSSVRDGEAMIEALLPTLDPAGTFRHALS---PLPCALEPM 153          
BLAST of mRNA_H-paniculata_contig160.3483.1 vs. uniprot
Match: A0A261Y1Z5_9FUNG (Mediator of RNA polymerase II transcription subunit 20 n=1 Tax=Bifiguratus adelaidae TaxID=1938954 RepID=A0A261Y1Z5_9FUNG)

HSP 1 Score: 52.0 bits (123), Expect = 5.880e-5
Identity = 37/125 (29.60%), Postives = 54/125 (43.20%), Query Frame = 0
Query:  143 VLEGG------SELEASLAS-KTALVSRLKAVVDGHVYRLGDFFIRVGSCRKGAVYKGLVLEVEYMPTCRVVDGLAMITAFLPNVDESGRFIAASDLRDPLVFG-RDPMYSRKHTALQTTDLFNR 259
            ++EGG       EL+  L   K     R   +V+G ++ +GDF +R+ +   G  YKGL+LE+EY P       L  I  FL  +  S   ++     D    G  D  +S  HT  Q      R
Sbjct:    1 MVEGGVLVAADRELDTILGKLKNCWAVRQTIIVEGAIFEVGDFTLRIANLLLGQAYKGLLLEIEYGPATAPNSALGPIQNFLQAITPSTAQLSYETTYDYRSVGLSDTDFSAAHTGYQYMSFLKR 125          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig160.3483.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7G8Q6_ECTSI1.210e-6855.50Mediator of RNA polymerase II transcription subuni... [more]
A0A835Z8G4_9STRA8.870e-2941.99Mediator of RNA polymerase II transcription subuni... [more]
A0A261Y1Z5_9FUNG5.880e-529.60Mediator of RNA polymerase II transcription subuni... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013921Mediator complex, subunit Med20PFAMPF08612Med20coord: 168..229
e-value: 1.4E-9
score: 37.7

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig160contigH-paniculata_contig160:37146..40683 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig160.3483.1mRNA_H-paniculata_contig160.3483.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig160 37101..41456 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig160.3483.1 ID=prot_H-paniculata_contig160.3483.1|Name=mRNA_H-paniculata_contig160.3483.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=263bp
MCETGTSVCCIFGQSVSQEGSLQAVKALQDHLVDALGAELLDRWTVEVTY
KLKQHKKKAMGSEMKFGVNVAAPFAGMKRDEGSAYPYAKQYCVRRSDLGT
RLLVVQEMAKESTAPAPATATPRAADAEGVASRKFCEGMLVHVLEGGSEL
EASLASKTALVSRLKAVVDGHVYRLGDFFIRVGSCRKGAVYKGLVLEVEY
MPTCRVVDGLAMITAFLPNVDESGRFIAASDLRDPLVFGRDPMYSRKHTA
LQTTDLFNRVFS*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013921Mediator_Med20