mRNA_H-paniculata_contig15989.3471.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig15989.3471.1
Unique NamemRNA_H-paniculata_contig15989.3471.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig15989.3471.1 vs. uniprot
Match: A0A6I9TKF2_SESIN (uncharacterized protein LOC105164425 n=1 Tax=Sesamum indicum TaxID=4182 RepID=A0A6I9TKF2_SESIN)

HSP 1 Score: 63.5 bits (153), Expect = 4.750e-10
Identity = 30/65 (46.15%), Postives = 42/65 (64.62%), Query Frame = 1
Query:    1 EMRGMVDNGLWEQIARPKDKLAVGTKMLYKFKVSKDGKMEKYKCRLVAQGVWQIEGVHYTEKYSP 195
            E++ +  N  W     P  K A+G+K ++K K+  DG +E+YK RLVA+G  QIEGV YTE +SP
Sbjct:  633 EIKALESNQTWTLTPLPPGKRAIGSKWVFKVKLRADGSIERYKARLVAKGFNQIEGVDYTESFSP 697          
BLAST of mRNA_H-paniculata_contig15989.3471.1 vs. uniprot
Match: A0A2R6NNP3_9APHY (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Hermanssonia centrifuga TaxID=98765 RepID=A0A2R6NNP3_9APHY)

HSP 1 Score: 62.8 bits (151), Expect = 8.710e-10
Identity = 28/65 (43.08%), Postives = 45/65 (69.23%), Query Frame = 1
Query:    1 EMRGMVDNGLWEQIARPKDKLAVGTKMLYKFKVSKDGKMEKYKCRLVAQGVWQIEGVHYTEKYSP 195
            EM   V   L++++  PK++  VG+K +++ K   +GK+EKYK RLVAQG  Q++G+ YTE ++P
Sbjct:   16 EMLAFVKANLFDEVECPKNRKVVGSKWVFRIKRGPNGKIEKYKARLVAQGFTQVKGIDYTETFAP 80          
BLAST of mRNA_H-paniculata_contig15989.3471.1 vs. uniprot
Match: A0A151TAZ4_CAJCA (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Cajanus cajan TaxID=3821 RepID=A0A151TAZ4_CAJCA)

HSP 1 Score: 61.6 bits (148), Expect = 1.240e-9
Identity = 28/65 (43.08%), Postives = 41/65 (63.08%), Query Frame = 1
Query:    1 EMRGMVDNGLWEQIARPKDKLAVGTKMLYKFKVSKDGKMEKYKCRLVAQGVWQIEGVHYTEKYSP 195
            +++ + DN  W   A P D  A+G K +YK K   DG++E+YK RLV  G  Q+EG+ YTE ++P
Sbjct:   35 KIQALEDNQTWTICALPADNKALGCKWVYKIKYHSDGRIERYKARLVILGNHQVEGIDYTETFAP 99          
BLAST of mRNA_H-paniculata_contig15989.3471.1 vs. uniprot
Match: A0A540NMU0_MALBA (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Malus baccata TaxID=106549 RepID=A0A540NMU0_MALBA)

HSP 1 Score: 60.5 bits (145), Expect = 1.340e-9
Identity = 27/65 (41.54%), Postives = 40/65 (61.54%), Query Frame = 1
Query:    1 EMRGMVDNGLWEQIARPKDKLAVGTKMLYKFKVSKDGKMEKYKCRLVAQGVWQIEGVHYTEKYSP 195
            E   +   G WE +  P+++  +G+K +YK K  +DGK+ +YK RLVAQG  Q  G+ Y E +SP
Sbjct:   72 EFEALQKQGTWELVPVPQNRNVIGSKWVYKLKKDQDGKVSRYKARLVAQGFSQEHGLEYDETFSP 136          
BLAST of mRNA_H-paniculata_contig15989.3471.1 vs. uniprot
Match: A0A1U8QBX0_NELNU (uncharacterized protein LOC109115749 n=1 Tax=Nelumbo nucifera TaxID=4432 RepID=A0A1U8QBX0_NELNU)

HSP 1 Score: 59.3 bits (142), Expect = 2.360e-9
Identity = 29/65 (44.62%), Postives = 41/65 (63.08%), Query Frame = 1
Query:    1 EMRGMVDNGLWEQIARPKDKLAVGTKMLYKFKVSKDGKMEKYKCRLVAQGVWQIEGVHYTEKYSP 195
            E+  +  N  WE  A P  K A+G+K +YK K++ DG +E+ K RLVA+G  Q+EGV Y +  SP
Sbjct:   32 ELAALEQNETWELTALPVGKKAIGSKWVYKVKLTPDGSVERCKARLVAKGYNQVEGVDYFDSCSP 96          
BLAST of mRNA_H-paniculata_contig15989.3471.1 vs. uniprot
Match: A0A4Y2TIU2_ARAVE (Retrovirus-related Pol polyprotein from transposon RE1 n=1 Tax=Araneus ventricosus TaxID=182803 RepID=A0A4Y2TIU2_ARAVE)

HSP 1 Score: 58.2 bits (139), Expect = 2.750e-9
Identity = 26/65 (40.00%), Postives = 42/65 (64.62%), Query Frame = 1
Query:    1 EMRGMVDNGLWEQIARPKDKLAVGTKMLYKFKVSKDGKMEKYKCRLVAQGVWQIEGVHYTEKYSP 195
            E+  M D  +WE +  P +K A+G + +Y  K + +G++ +YK RLVAQ + Q+EG+ Y E +SP
Sbjct:   28 EITSMKDKEVWEIVPHPLNKTAIGCRWVYSIKENSEGQILRYKVRLVAQRLHQVEGLDYYETFSP 92          
BLAST of mRNA_H-paniculata_contig15989.3471.1 vs. uniprot
Match: A0A2C5X5E6_9PEZI (Copia protein n=1 Tax=Ceratocystis fimbriata CBS 114723 TaxID=1035309 RepID=A0A2C5X5E6_9PEZI)

HSP 1 Score: 58.5 bits (140), Expect = 4.780e-9
Identity = 26/69 (37.68%), Postives = 43/69 (62.32%), Query Frame = 1
Query:    1 EMRGMVDNGLWEQIARPKDKLAVGTKMLYKFKVSKDGKMEKYKCRLVAQGVWQIEGVHYTEKYSPTPGS 207
            E+  + + G W  + +P+  + + T+ ++  K   DGK+EKYK RLV +G  Q  GV++ E ++PTPGS
Sbjct:   31 ELNTLTEFGTWRFVPKPEGCVPIDTRFVFAKKYDLDGKLEKYKARLVVRGFRQEYGVNFFESFAPTPGS 99          
BLAST of mRNA_H-paniculata_contig15989.3471.1 vs. uniprot
Match: A0A151T5R4_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=2 Tax=Cajanus cajan TaxID=3821 RepID=A0A151T5R4_CAJCA)

HSP 1 Score: 60.5 bits (145), Expect = 5.870e-9
Identity = 26/65 (40.00%), Postives = 41/65 (63.08%), Query Frame = 1
Query:    1 EMRGMVDNGLWEQIARPKDKLAVGTKMLYKFKVSKDGKMEKYKCRLVAQGVWQIEGVHYTEKYSP 195
            EM  + +N  W+ +  PK+K  VG + ++  K+  DGK+++YK RLVAQG  Q  G+ Y E ++P
Sbjct:  871 EMAALEENKTWDIVKLPKEKKVVGCRWIFTTKMGADGKIDRYKARLVAQGYTQTHGIDYEETFAP 935          
BLAST of mRNA_H-paniculata_contig15989.3471.1 vs. uniprot
Match: A0A5N5FUF0_9ROSA (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Pyrus ussuriensis x Pyrus communis TaxID=2448454 RepID=A0A5N5FUF0_9ROSA)

HSP 1 Score: 60.1 bits (144), Expect = 7.960e-9
Identity = 27/65 (41.54%), Postives = 40/65 (61.54%), Query Frame = 1
Query:    1 EMRGMVDNGLWEQIARPKDKLAVGTKMLYKFKVSKDGKMEKYKCRLVAQGVWQIEGVHYTEKYSP 195
            E   +   G WE +  P+++  +G+K +YK K  +DGK+ +YK RLVAQG  Q  G+ Y E +SP
Sbjct:  635 EFEALQKQGTWELVPVPQNRNVIGSKWVYKLKKDQDGKVSRYKARLVAQGFSQEHGLDYEETFSP 699          
BLAST of mRNA_H-paniculata_contig15989.3471.1 vs. uniprot
Match: V5FZT7_ANOGL (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Anoplophora glabripennis TaxID=217634 RepID=V5FZT7_ANOGL)

HSP 1 Score: 59.7 bits (143), Expect = 1.050e-8
Identity = 24/65 (36.92%), Postives = 44/65 (67.69%), Query Frame = 1
Query:    1 EMRGMVDNGLWEQIARPKDKLAVGTKMLYKFKVSKDGKMEKYKCRLVAQGVWQIEGVHYTEKYSP 195
            E++ ++ N  WE + RPKD+  +G++++ + K + DG++E+ K  LVAQG  Q  G+H+ E ++P
Sbjct:  106 EIKSIIKNNTWELVERPKDREIIGSRIVLRNKYTADGRLERRKAMLVAQGFSQRPGIHFKETFAP 170          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig15989.3471.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6I9TKF2_SESIN4.750e-1046.15uncharacterized protein LOC105164425 n=1 Tax=Sesam... [more]
A0A2R6NNP3_9APHY8.710e-1043.08Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A151TAZ4_CAJCA1.240e-943.08Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A540NMU0_MALBA1.340e-941.54Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A1U8QBX0_NELNU2.360e-944.62uncharacterized protein LOC109115749 n=1 Tax=Nelum... [more]
A0A4Y2TIU2_ARAVE2.750e-940.00Retrovirus-related Pol polyprotein from transposon... [more]
A0A2C5X5E6_9PEZI4.780e-937.68Copia protein n=1 Tax=Ceratocystis fimbriata CBS 1... [more]
A0A151T5R4_CAJCA5.870e-940.00Retrovirus-related Pol polyprotein from transposon... [more]
A0A5N5FUF0_9ROSA7.960e-941.54Reverse transcriptase Ty1/copia-type domain-contai... [more]
V5FZT7_ANOGL1.050e-836.92Retrovirus-related Pol polyprotein from transposon... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig15989contigH-paniculata_contig15989:676..894 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score62.4
Seed ortholog evalue1e-07
Seed eggNOG ortholog28532.XP_010532348.1
Preferred nameUSP
KEGG rclassRC00002
KEGG koko:K12447
KEGG ReactionR00289,R00502,R01381,R03077,R08845
KEGG Pathwayko00040,ko00052,ko00053,ko00520,ko01100,ko01130,map00040,map00052,map00053,map00520,map01100,map01130
KEGG ModuleM00014
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0003983,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006011,GO:0006082,GO:0006139,GO:0006725,GO:0006793,GO:0006807,GO:0007275,GO:0008150,GO:0008152,GO:0009058,GO:0009225,GO:0009226,GO:0009555,GO:0009987,GO:0010035,GO:0010038,GO:0010491,GO:0016740,GO:0016772,GO:0016779,GO:0017103,GO:0018130,GO:0019438,GO:0019752,GO:0032501,GO:0032502,GO:0033356,GO:0034641,GO:0034654,GO:0042221,GO:0042995,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046398,GO:0046483,GO:0046686,GO:0047338,GO:0047350,GO:0048229,GO:0048856,GO:0050896,GO:0051748,GO:0052573,GO:0055086,GO:0070569,GO:0071704,GO:0090406,GO:0120025,GO:1901135,GO:1901137,GO:1901360,GO:1901362,GO:1901576
EggNOG free text desc.udp-sugar
EggNOG OGs37MVU@33090,3GGIU@35493,3HSQP@3699,COG2801@1,COG4284@1,KOG0017@2759,KOG2388@2759
EC2.7.7.64
COG Functional cat.M
Best tax levelBrassicales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Exons1
Model size219
Cds size216
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929277.3711488-CDS-H-paniculata_contig15989:675..8911622929277.3711488-CDS-H-paniculata_contig15989:675..891Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15989 676..891 -
1691480797.466929-CDS-H-paniculata_contig15989:675..8911691480797.466929-CDS-H-paniculata_contig15989:675..891Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15989 676..891 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929277.3905265-UTR-H-paniculata_contig15989:891..8941622929277.3905265-UTR-H-paniculata_contig15989:891..894Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig15989 892..894 -
1691480797.4802096-UTR-H-paniculata_contig15989:891..8941691480797.4802096-UTR-H-paniculata_contig15989:891..894Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig15989 892..894 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig15989.3471.1prot_H-paniculata_contig15989.3471.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig15989 676..891 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig15989.3471.1

>prot_H-paniculata_contig15989.3471.1 ID=prot_H-paniculata_contig15989.3471.1|Name=mRNA_H-paniculata_contig15989.3471.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=72bp
MRGMVDNGLWEQIARPKDKLAVGTKMLYKFKVSKDGKMEKYKCRLVAQGV
WQIEGVHYTEKYSPTPGSHSC*
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mRNA from alignment at H-paniculata_contig15989:676..894-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig15989.3471.1 ID=mRNA_H-paniculata_contig15989.3471.1|Name=mRNA_H-paniculata_contig15989.3471.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=219bp|location=Sequence derived from alignment at H-paniculata_contig15989:676..894- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAGATGCGCGGAATGGTAGACAACGGACTATGGGAGCAGATAGCCCGACC AAAGGACAAGCTTGCGGTGGGAACAAAGATGCTTTATAAATTCAAGGTCA GCAAGGACGGCAAGATGGAGAAGTATAAATGTAGACTTGTGGCCCAGGGC GTTTGGCAGATCGAAGGGGTACACTACACAGAGAAGTACTCACCTACACC GGGATCACATTCTTGTTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig15989:676..894-

>mRNA_H-paniculata_contig15989.3471.1 ID=mRNA_H-paniculata_contig15989.3471.1|Name=mRNA_H-paniculata_contig15989.3471.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=432bp|location=Sequence derived from alignment at H-paniculata_contig15989:676..894- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCGCGGAATGGTAGACAACGGACTATGGGAGCAGATAGCCCGACCAAA
GGACAAGCTTGCGGTGGGAACAAAGATGCTTTATAAATTCAAGGTCAGCA
AGGACGGCAAGATGGAGAAGTATAAATGTAGACTTGTGGCCCAGGGCGTT
TGGCAGATCGAAGGGGTACACTACACAGAGAAGTACTCACCTACACCGGG
ATCACATTCTTGTTGAATGCGCGGAATGGTAGACAACGGACTATGGGAGC
AGATAGCCCGACCAAAGGACAAGCTTGCGGTGGGAACAAAGATGCTTTAT
AAATTCAAGGTCAGCAAGGACGGCAAGATGGAGAAGTATAAATGTAGACT
TGTGGCCCAGGGCGTTTGGCAGATCGAAGGGGTACACTACACAGAGAAGT
ACTCACCTACACCGGGATCACATTCTTGTTGA
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