mRNA_H-paniculata_contig15989.3471.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig15989.3471.1 vs. uniprot
Match: A0A6I9TKF2_SESIN (uncharacterized protein LOC105164425 n=1 Tax=Sesamum indicum TaxID=4182 RepID=A0A6I9TKF2_SESIN) HSP 1 Score: 63.5 bits (153), Expect = 4.750e-10 Identity = 30/65 (46.15%), Postives = 42/65 (64.62%), Query Frame = 1
Query: 1 EMRGMVDNGLWEQIARPKDKLAVGTKMLYKFKVSKDGKMEKYKCRLVAQGVWQIEGVHYTEKYSP 195
E++ + N W P K A+G+K ++K K+ DG +E+YK RLVA+G QIEGV YTE +SP
Sbjct: 633 EIKALESNQTWTLTPLPPGKRAIGSKWVFKVKLRADGSIERYKARLVAKGFNQIEGVDYTESFSP 697
BLAST of mRNA_H-paniculata_contig15989.3471.1 vs. uniprot
Match: A0A2R6NNP3_9APHY (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Hermanssonia centrifuga TaxID=98765 RepID=A0A2R6NNP3_9APHY) HSP 1 Score: 62.8 bits (151), Expect = 8.710e-10 Identity = 28/65 (43.08%), Postives = 45/65 (69.23%), Query Frame = 1
Query: 1 EMRGMVDNGLWEQIARPKDKLAVGTKMLYKFKVSKDGKMEKYKCRLVAQGVWQIEGVHYTEKYSP 195
EM V L++++ PK++ VG+K +++ K +GK+EKYK RLVAQG Q++G+ YTE ++P
Sbjct: 16 EMLAFVKANLFDEVECPKNRKVVGSKWVFRIKRGPNGKIEKYKARLVAQGFTQVKGIDYTETFAP 80
BLAST of mRNA_H-paniculata_contig15989.3471.1 vs. uniprot
Match: A0A151TAZ4_CAJCA (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Cajanus cajan TaxID=3821 RepID=A0A151TAZ4_CAJCA) HSP 1 Score: 61.6 bits (148), Expect = 1.240e-9 Identity = 28/65 (43.08%), Postives = 41/65 (63.08%), Query Frame = 1
Query: 1 EMRGMVDNGLWEQIARPKDKLAVGTKMLYKFKVSKDGKMEKYKCRLVAQGVWQIEGVHYTEKYSP 195
+++ + DN W A P D A+G K +YK K DG++E+YK RLV G Q+EG+ YTE ++P
Sbjct: 35 KIQALEDNQTWTICALPADNKALGCKWVYKIKYHSDGRIERYKARLVILGNHQVEGIDYTETFAP 99
BLAST of mRNA_H-paniculata_contig15989.3471.1 vs. uniprot
Match: A0A540NMU0_MALBA (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Malus baccata TaxID=106549 RepID=A0A540NMU0_MALBA) HSP 1 Score: 60.5 bits (145), Expect = 1.340e-9 Identity = 27/65 (41.54%), Postives = 40/65 (61.54%), Query Frame = 1
Query: 1 EMRGMVDNGLWEQIARPKDKLAVGTKMLYKFKVSKDGKMEKYKCRLVAQGVWQIEGVHYTEKYSP 195
E + G WE + P+++ +G+K +YK K +DGK+ +YK RLVAQG Q G+ Y E +SP
Sbjct: 72 EFEALQKQGTWELVPVPQNRNVIGSKWVYKLKKDQDGKVSRYKARLVAQGFSQEHGLEYDETFSP 136
BLAST of mRNA_H-paniculata_contig15989.3471.1 vs. uniprot
Match: A0A1U8QBX0_NELNU (uncharacterized protein LOC109115749 n=1 Tax=Nelumbo nucifera TaxID=4432 RepID=A0A1U8QBX0_NELNU) HSP 1 Score: 59.3 bits (142), Expect = 2.360e-9 Identity = 29/65 (44.62%), Postives = 41/65 (63.08%), Query Frame = 1
Query: 1 EMRGMVDNGLWEQIARPKDKLAVGTKMLYKFKVSKDGKMEKYKCRLVAQGVWQIEGVHYTEKYSP 195
E+ + N WE A P K A+G+K +YK K++ DG +E+ K RLVA+G Q+EGV Y + SP
Sbjct: 32 ELAALEQNETWELTALPVGKKAIGSKWVYKVKLTPDGSVERCKARLVAKGYNQVEGVDYFDSCSP 96
BLAST of mRNA_H-paniculata_contig15989.3471.1 vs. uniprot
Match: A0A4Y2TIU2_ARAVE (Retrovirus-related Pol polyprotein from transposon RE1 n=1 Tax=Araneus ventricosus TaxID=182803 RepID=A0A4Y2TIU2_ARAVE) HSP 1 Score: 58.2 bits (139), Expect = 2.750e-9 Identity = 26/65 (40.00%), Postives = 42/65 (64.62%), Query Frame = 1
Query: 1 EMRGMVDNGLWEQIARPKDKLAVGTKMLYKFKVSKDGKMEKYKCRLVAQGVWQIEGVHYTEKYSP 195
E+ M D +WE + P +K A+G + +Y K + +G++ +YK RLVAQ + Q+EG+ Y E +SP
Sbjct: 28 EITSMKDKEVWEIVPHPLNKTAIGCRWVYSIKENSEGQILRYKVRLVAQRLHQVEGLDYYETFSP 92
BLAST of mRNA_H-paniculata_contig15989.3471.1 vs. uniprot
Match: A0A2C5X5E6_9PEZI (Copia protein n=1 Tax=Ceratocystis fimbriata CBS 114723 TaxID=1035309 RepID=A0A2C5X5E6_9PEZI) HSP 1 Score: 58.5 bits (140), Expect = 4.780e-9 Identity = 26/69 (37.68%), Postives = 43/69 (62.32%), Query Frame = 1
Query: 1 EMRGMVDNGLWEQIARPKDKLAVGTKMLYKFKVSKDGKMEKYKCRLVAQGVWQIEGVHYTEKYSPTPGS 207
E+ + + G W + +P+ + + T+ ++ K DGK+EKYK RLV +G Q GV++ E ++PTPGS
Sbjct: 31 ELNTLTEFGTWRFVPKPEGCVPIDTRFVFAKKYDLDGKLEKYKARLVVRGFRQEYGVNFFESFAPTPGS 99
BLAST of mRNA_H-paniculata_contig15989.3471.1 vs. uniprot
Match: A0A151T5R4_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=2 Tax=Cajanus cajan TaxID=3821 RepID=A0A151T5R4_CAJCA) HSP 1 Score: 60.5 bits (145), Expect = 5.870e-9 Identity = 26/65 (40.00%), Postives = 41/65 (63.08%), Query Frame = 1
Query: 1 EMRGMVDNGLWEQIARPKDKLAVGTKMLYKFKVSKDGKMEKYKCRLVAQGVWQIEGVHYTEKYSP 195
EM + +N W+ + PK+K VG + ++ K+ DGK+++YK RLVAQG Q G+ Y E ++P
Sbjct: 871 EMAALEENKTWDIVKLPKEKKVVGCRWIFTTKMGADGKIDRYKARLVAQGYTQTHGIDYEETFAP 935
BLAST of mRNA_H-paniculata_contig15989.3471.1 vs. uniprot
Match: A0A5N5FUF0_9ROSA (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Pyrus ussuriensis x Pyrus communis TaxID=2448454 RepID=A0A5N5FUF0_9ROSA) HSP 1 Score: 60.1 bits (144), Expect = 7.960e-9 Identity = 27/65 (41.54%), Postives = 40/65 (61.54%), Query Frame = 1
Query: 1 EMRGMVDNGLWEQIARPKDKLAVGTKMLYKFKVSKDGKMEKYKCRLVAQGVWQIEGVHYTEKYSP 195
E + G WE + P+++ +G+K +YK K +DGK+ +YK RLVAQG Q G+ Y E +SP
Sbjct: 635 EFEALQKQGTWELVPVPQNRNVIGSKWVYKLKKDQDGKVSRYKARLVAQGFSQEHGLDYEETFSP 699
BLAST of mRNA_H-paniculata_contig15989.3471.1 vs. uniprot
Match: V5FZT7_ANOGL (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Anoplophora glabripennis TaxID=217634 RepID=V5FZT7_ANOGL) HSP 1 Score: 59.7 bits (143), Expect = 1.050e-8 Identity = 24/65 (36.92%), Postives = 44/65 (67.69%), Query Frame = 1
Query: 1 EMRGMVDNGLWEQIARPKDKLAVGTKMLYKFKVSKDGKMEKYKCRLVAQGVWQIEGVHYTEKYSP 195
E++ ++ N WE + RPKD+ +G++++ + K + DG++E+ K LVAQG Q G+H+ E ++P
Sbjct: 106 EIKSIIKNNTWELVERPKDREIIGSRIVLRNKYTADGRLERRKAMLVAQGFSQRPGIHFKETFAP 170 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig15989.3471.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig15989.3471.1 >prot_H-paniculata_contig15989.3471.1 ID=prot_H-paniculata_contig15989.3471.1|Name=mRNA_H-paniculata_contig15989.3471.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=72bp MRGMVDNGLWEQIARPKDKLAVGTKMLYKFKVSKDGKMEKYKCRLVAQGVback to top mRNA from alignment at H-paniculata_contig15989:676..894- Legend: UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig15989.3471.1 ID=mRNA_H-paniculata_contig15989.3471.1|Name=mRNA_H-paniculata_contig15989.3471.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=219bp|location=Sequence derived from alignment at H-paniculata_contig15989:676..894- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig15989:676..894- >mRNA_H-paniculata_contig15989.3471.1 ID=mRNA_H-paniculata_contig15989.3471.1|Name=mRNA_H-paniculata_contig15989.3471.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=432bp|location=Sequence derived from alignment at H-paniculata_contig15989:676..894- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |