mRNA_H-paniculata_contig15977.3465.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig15977.3465.1
Unique NamemRNA_H-paniculata_contig15977.3465.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig15977.3465.1 vs. uniprot
Match: D7G3M9_ECTSI (NUC153 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G3M9_ECTSI)

HSP 1 Score: 128 bits (321), Expect = 8.000e-33
Identity = 63/71 (88.73%), Postives = 66/71 (92.96%), Query Frame = 1
Query:    1 LLSGKTLPQWLSEKKRRALSKDVEYRRRIELLQDFDFPTASQKVCVSPDGQYVIVAGTYPPQIKGMDVSQL 213
            L SGKTLPQWLSEKKRR+LSKDVEYRRRIELLQDFDFPTASQKVCVSPD QYVIVAGTYPPQIK  +V+ L
Sbjct:   17 LSSGKTLPQWLSEKKRRSLSKDVEYRRRIELLQDFDFPTASQKVCVSPDAQYVIVAGTYPPQIKVFEVADL 87          
BLAST of mRNA_H-paniculata_contig15977.3465.1 vs. uniprot
Match: A0A835Z278_9STRA (WD40-repeat-containing domain protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z278_9STRA)

HSP 1 Score: 108 bits (269), Expect = 9.460e-26
Identity = 51/71 (71.83%), Postives = 63/71 (88.73%), Query Frame = 1
Query:    1 LLSGKTLPQWLSEKKRRALSKDVEYRRRIELLQDFDFPTASQKVCVSPDGQYVIVAGTYPPQIKGMDVSQL 213
            L SGKTLPQWL++K++RALSKD  YRRRIELLQDF+FPTASQ + +SPDGQ+VIV GTYPPQ+K  +V++L
Sbjct:   34 LSSGKTLPQWLNDKQKRALSKDDGYRRRIELLQDFEFPTASQTIKMSPDGQFVIVTGTYPPQVKVYEVAEL 104          
BLAST of mRNA_H-paniculata_contig15977.3465.1 vs. uniprot
Match: A0A024TJ26_9STRA (NUC153 domain-containing protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TJ26_9STRA)

HSP 1 Score: 101 bits (252), Expect = 1.870e-23
Identity = 48/73 (65.75%), Postives = 59/73 (80.82%), Query Frame = 1
Query:    1 LLSGKTLPQWLSEKKRRALSKDVEYRRRIELLQDFDFPTASQKVCVSPDGQYVIVAGTYPPQIKGMDVSQLWL 219
            L +GKTLPQWL++K R+ALS+D +YRRR+ELLQDF FP +SQ+V +SPDG YVI +GTYPP IK  DV  L L
Sbjct:   17 LSAGKTLPQWLAQKTRKALSRDEDYRRRLELLQDFHFPVSSQRVTMSPDGHYVIASGTYPPSIKVYDVRDLSL 89          
BLAST of mRNA_H-paniculata_contig15977.3465.1 vs. uniprot
Match: W4GCA3_9STRA (NUC153 domain-containing protein n=5 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GCA3_9STRA)

HSP 1 Score: 101 bits (252), Expect = 1.870e-23
Identity = 48/73 (65.75%), Postives = 59/73 (80.82%), Query Frame = 1
Query:    1 LLSGKTLPQWLSEKKRRALSKDVEYRRRIELLQDFDFPTASQKVCVSPDGQYVIVAGTYPPQIKGMDVSQLWL 219
            L +GKTLPQW+++K RRALS+D +Y+RR+ELLQDF FP +SQ+V +SPDG YVI AGTYPP IK  DV  L L
Sbjct:   17 LSAGKTLPQWIAQKTRRALSRDEDYQRRLELLQDFHFPVSSQRVTMSPDGHYVIAAGTYPPSIKVYDVRDLSL 89          
BLAST of mRNA_H-paniculata_contig15977.3465.1 vs. uniprot
Match: A0A2D4BFA0_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BFA0_PYTIN)

HSP 1 Score: 101 bits (251), Expect = 2.610e-23
Identity = 46/71 (64.79%), Postives = 57/71 (80.28%), Query Frame = 1
Query:    1 LLSGKTLPQWLSEKKRRALSKDVEYRRRIELLQDFDFPTASQKVCVSPDGQYVIVAGTYPPQIKGMDVSQL 213
            L SGKTLPQWL+EK ++ALSKD +YRRR+ELLQDF FP+ SQ+V +SPDG Y+I  G YPP +K  DV +L
Sbjct: 2411 LASGKTLPQWLAEKTKKALSKDEDYRRRVELLQDFHFPSGSQRVKMSPDGNYIIATGMYPPSVKVFDVREL 2481          
BLAST of mRNA_H-paniculata_contig15977.3465.1 vs. uniprot
Match: A0A6G0X8Q3_9STRA (NUC153 domain-containing protein n=2 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0X8Q3_9STRA)

HSP 1 Score: 100 bits (250), Expect = 3.490e-23
Identity = 47/73 (64.38%), Postives = 59/73 (80.82%), Query Frame = 1
Query:    1 LLSGKTLPQWLSEKKRRALSKDVEYRRRIELLQDFDFPTASQKVCVSPDGQYVIVAGTYPPQIKGMDVSQLWL 219
            L +GKTLPQWL++K R+ALS+D +YRRR+ELLQDF FP +SQ+V +SPDG YVI +GTYPP +K  DV  L L
Sbjct:   17 LSAGKTLPQWLAQKTRKALSRDEDYRRRLELLQDFHFPVSSQRVVMSPDGHYVIASGTYPPSLKVYDVRDLSL 89          
BLAST of mRNA_H-paniculata_contig15977.3465.1 vs. uniprot
Match: A0A485KJT6_9STRA (Aste57867_8214 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KJT6_9STRA)

HSP 1 Score: 100 bits (249), Expect = 4.760e-23
Identity = 47/73 (64.38%), Postives = 58/73 (79.45%), Query Frame = 1
Query:    1 LLSGKTLPQWLSEKKRRALSKDVEYRRRIELLQDFDFPTASQKVCVSPDGQYVIVAGTYPPQIKGMDVSQLWL 219
            L +GKTLPQWL++K R+ALS+D +YRRR+ELLQDF FP +SQ+V +SPDG YVI  GTYPP +K  DV  L L
Sbjct:   18 LSAGKTLPQWLAQKTRKALSRDEDYRRRLELLQDFHFPVSSQRVTMSPDGHYVIATGTYPPSLKVYDVRDLSL 90          
BLAST of mRNA_H-paniculata_contig15977.3465.1 vs. uniprot
Match: A0A2R5GXA8_9STRA (Nucleolar protein 10 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GXA8_9STRA)

HSP 1 Score: 95.9 bits (237), Expect = 2.000e-21
Identity = 42/68 (61.76%), Postives = 55/68 (80.88%), Query Frame = 1
Query:   10 GKTLPQWLSEKKRRALSKDVEYRRRIELLQDFDFPTASQKVCVSPDGQYVIVAGTYPPQIKGMDVSQL 213
            GKTLPQW+S+K R++L+KD EYRRRIEL+QDF FP  S +V VSPDG+Y++  G+YPPQ+K  D  +L
Sbjct:   17 GKTLPQWISDKNRKSLAKDEEYRRRIELVQDFYFPATSGRVKVSPDGEYIVATGSYPPQVKVYDTREL 84          
BLAST of mRNA_H-paniculata_contig15977.3465.1 vs. uniprot
Match: A0A1W0A822_9STRA (Nucleolar protein 10 n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A822_9STRA)

HSP 1 Score: 94.7 bits (234), Expect = 5.150e-21
Identity = 44/71 (61.97%), Postives = 55/71 (77.46%), Query Frame = 1
Query:    1 LLSGKTLPQWLSEKKRRALSKDVEYRRRIELLQDFDFPTASQKVCVSPDGQYVIVAGTYPPQIKGMDVSQL 213
            L +GKTLPQWL++K ++ALS+D EYRRR+EL+QDF FP AS  V +SPDG Y+I  GTYPP +K  DV  L
Sbjct:  552 LSAGKTLPQWLAQKTKKALSRDEEYRRRLELVQDFTFPIASHCVTMSPDGNYIIATGTYPPIVKVYDVRDL 622          
BLAST of mRNA_H-paniculata_contig15977.3465.1 vs. uniprot
Match: A0A2P6TR30_CHLSO (Nucleolar 10 isoform B n=2 Tax=Chlorella sorokiniana TaxID=3076 RepID=A0A2P6TR30_CHLSO)

HSP 1 Score: 94.4 bits (233), Expect = 6.950e-21
Identity = 41/68 (60.29%), Postives = 55/68 (80.88%), Query Frame = 1
Query:   10 GKTLPQWLSEKKRRALSKDVEYRRRIELLQDFDFPTASQKVCVSPDGQYVIVAGTYPPQIKGMDVSQL 213
            GK +P WLS+KK++AL KD EYRRRIEL+QDF+FP   Q++ V+PDGQY+  +G +PPQ++  DVSQL
Sbjct:   19 GKNIPAWLSDKKKKALRKDEEYRRRIELIQDFEFPAGCQRIKVTPDGQYIFASGYHPPQMRCYDVSQL 86          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig15977.3465.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G3M9_ECTSI8.000e-3388.73NUC153 domain-containing protein n=2 Tax=Ectocarpu... [more]
A0A835Z278_9STRA9.460e-2671.83WD40-repeat-containing domain protein n=1 Tax=Trib... [more]
A0A024TJ26_9STRA1.870e-2365.75NUC153 domain-containing protein n=2 Tax=Aphanomyc... [more]
W4GCA3_9STRA1.870e-2365.75NUC153 domain-containing protein n=5 Tax=Aphanomyc... [more]
A0A2D4BFA0_PYTIN2.610e-2364.79Uncharacterized protein n=1 Tax=Pythium insidiosum... [more]
A0A6G0X8Q3_9STRA3.490e-2364.38NUC153 domain-containing protein n=2 Tax=Aphanomyc... [more]
A0A485KJT6_9STRA4.760e-2364.38Aste57867_8214 protein n=1 Tax=Aphanomyces stellat... [more]
A0A2R5GXA8_9STRA2.000e-2161.76Nucleolar protein 10 n=1 Tax=Hondaea fermentalgian... [more]
A0A1W0A822_9STRA5.150e-2161.97Nucleolar protein 10 n=1 Tax=Thraustotheca clavata... [more]
A0A2P6TR30_CHLSO6.950e-2160.29Nucleolar 10 isoform B n=2 Tax=Chlorella sorokinia... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig15977contigH-paniculata_contig15977:5703..5921 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score129.8
Seed ortholog evalue5.2e-28
Seed eggNOG ortholog2880.D7G3M9
Preferred nameNOL10
KEGG koko:K14788
Hectar predicted targeting categoryother localisation
GOsGO:0000462,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0022613,GO:0030490,GO:0030684,GO:0030686,GO:0031974,GO:0031981,GO:0032040,GO:0032991,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0042274,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0046483,GO:0070013,GO:0071704,GO:0071840,GO:0090304,GO:1901360,GO:1990904
EggNOG free text desc.rRNA processing
EggNOG OGsKOG2321@1,KOG2321@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03009
Exons1
Model size219
Cds size219
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929276.7792351-CDS-H-paniculata_contig15977:5702..59211622929276.7792351-CDS-H-paniculata_contig15977:5702..5921Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15977 5703..5921 +
1691480797.2002347-CDS-H-paniculata_contig15977:5702..59211691480797.2002347-CDS-H-paniculata_contig15977:5702..5921Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15977 5703..5921 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig15977.3465.1prot_H-paniculata_contig15977.3465.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig15977 5703..5921 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig15977.3465.1

>prot_H-paniculata_contig15977.3465.1 ID=prot_H-paniculata_contig15977.3465.1|Name=mRNA_H-paniculata_contig15977.3465.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=73bp
LLSGKTLPQWLSEKKRRALSKDVEYRRRIELLQDFDFPTASQKVCVSPDG
QYVIVAGTYPPQIKGMDVSQLWL
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mRNA from alignment at H-paniculata_contig15977:5703..5921+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig15977.3465.1 ID=mRNA_H-paniculata_contig15977.3465.1|Name=mRNA_H-paniculata_contig15977.3465.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=219bp|location=Sequence derived from alignment at H-paniculata_contig15977:5703..5921+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTGTTGTCAGGGAAAACCCTACCGCAATGGCTCTCCGAAAAAAAACGGCG GGCGTTGTCCAAGGATGTGGAGTACCGCCGCAGGATCGAGCTGCTGCAGG ACTTCGACTTTCCGACAGCGTCGCAAAAAGTGTGCGTGTCTCCGGACGGG CAGTACGTGATCGTTGCGGGCACGTATCCTCCACAGATCAAAGGTATGGA TGTGTCCCAGTTGTGGCTG
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Coding sequence (CDS) from alignment at H-paniculata_contig15977:5703..5921+

>mRNA_H-paniculata_contig15977.3465.1 ID=mRNA_H-paniculata_contig15977.3465.1|Name=mRNA_H-paniculata_contig15977.3465.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=438bp|location=Sequence derived from alignment at H-paniculata_contig15977:5703..5921+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTGTTGTCAGGGAAAACCCTACCGCAATGGCTCTCCGAAAAAAAACGGCG
GGCGTTGTCCAAGGATGTGGAGTACCGCCGCAGGATCGAGCTGCTGCAGG
ACTTCGACTTTCCGACAGCGTCGCAAAAAGTGTGCGTGTCTCCGGACGGG
CAGTACGTGATCGTTGCGGGCACGTATCCTCCACAGATCAAAGGTATGGA
TGTGTCCCAGTTGTGGCTGCTGTTGTCAGGGAAAACCCTACCGCAATGGC
TCTCCGAAAAAAAACGGCGGGCGTTGTCCAAGGATGTGGAGTACCGCCGC
AGGATCGAGCTGCTGCAGGACTTCGACTTTCCGACAGCGTCGCAAAAAGT
GTGCGTGTCTCCGGACGGGCAGTACGTGATCGTTGCGGGCACGTATCCTC
CACAGATCAAAGGTATGGATGTGTCCCAGTTGTGGCTG
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