mRNA_H-paniculata_contig15977.3465.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig15977.3465.1 vs. uniprot
Match: D7G3M9_ECTSI (NUC153 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G3M9_ECTSI) HSP 1 Score: 128 bits (321), Expect = 8.000e-33 Identity = 63/71 (88.73%), Postives = 66/71 (92.96%), Query Frame = 1
Query: 1 LLSGKTLPQWLSEKKRRALSKDVEYRRRIELLQDFDFPTASQKVCVSPDGQYVIVAGTYPPQIKGMDVSQL 213
L SGKTLPQWLSEKKRR+LSKDVEYRRRIELLQDFDFPTASQKVCVSPD QYVIVAGTYPPQIK +V+ L
Sbjct: 17 LSSGKTLPQWLSEKKRRSLSKDVEYRRRIELLQDFDFPTASQKVCVSPDAQYVIVAGTYPPQIKVFEVADL 87
BLAST of mRNA_H-paniculata_contig15977.3465.1 vs. uniprot
Match: A0A835Z278_9STRA (WD40-repeat-containing domain protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z278_9STRA) HSP 1 Score: 108 bits (269), Expect = 9.460e-26 Identity = 51/71 (71.83%), Postives = 63/71 (88.73%), Query Frame = 1
Query: 1 LLSGKTLPQWLSEKKRRALSKDVEYRRRIELLQDFDFPTASQKVCVSPDGQYVIVAGTYPPQIKGMDVSQL 213
L SGKTLPQWL++K++RALSKD YRRRIELLQDF+FPTASQ + +SPDGQ+VIV GTYPPQ+K +V++L
Sbjct: 34 LSSGKTLPQWLNDKQKRALSKDDGYRRRIELLQDFEFPTASQTIKMSPDGQFVIVTGTYPPQVKVYEVAEL 104
BLAST of mRNA_H-paniculata_contig15977.3465.1 vs. uniprot
Match: A0A024TJ26_9STRA (NUC153 domain-containing protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TJ26_9STRA) HSP 1 Score: 101 bits (252), Expect = 1.870e-23 Identity = 48/73 (65.75%), Postives = 59/73 (80.82%), Query Frame = 1
Query: 1 LLSGKTLPQWLSEKKRRALSKDVEYRRRIELLQDFDFPTASQKVCVSPDGQYVIVAGTYPPQIKGMDVSQLWL 219
L +GKTLPQWL++K R+ALS+D +YRRR+ELLQDF FP +SQ+V +SPDG YVI +GTYPP IK DV L L
Sbjct: 17 LSAGKTLPQWLAQKTRKALSRDEDYRRRLELLQDFHFPVSSQRVTMSPDGHYVIASGTYPPSIKVYDVRDLSL 89
BLAST of mRNA_H-paniculata_contig15977.3465.1 vs. uniprot
Match: W4GCA3_9STRA (NUC153 domain-containing protein n=5 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GCA3_9STRA) HSP 1 Score: 101 bits (252), Expect = 1.870e-23 Identity = 48/73 (65.75%), Postives = 59/73 (80.82%), Query Frame = 1
Query: 1 LLSGKTLPQWLSEKKRRALSKDVEYRRRIELLQDFDFPTASQKVCVSPDGQYVIVAGTYPPQIKGMDVSQLWL 219
L +GKTLPQW+++K RRALS+D +Y+RR+ELLQDF FP +SQ+V +SPDG YVI AGTYPP IK DV L L
Sbjct: 17 LSAGKTLPQWIAQKTRRALSRDEDYQRRLELLQDFHFPVSSQRVTMSPDGHYVIAAGTYPPSIKVYDVRDLSL 89
BLAST of mRNA_H-paniculata_contig15977.3465.1 vs. uniprot
Match: A0A2D4BFA0_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BFA0_PYTIN) HSP 1 Score: 101 bits (251), Expect = 2.610e-23 Identity = 46/71 (64.79%), Postives = 57/71 (80.28%), Query Frame = 1
Query: 1 LLSGKTLPQWLSEKKRRALSKDVEYRRRIELLQDFDFPTASQKVCVSPDGQYVIVAGTYPPQIKGMDVSQL 213
L SGKTLPQWL+EK ++ALSKD +YRRR+ELLQDF FP+ SQ+V +SPDG Y+I G YPP +K DV +L
Sbjct: 2411 LASGKTLPQWLAEKTKKALSKDEDYRRRVELLQDFHFPSGSQRVKMSPDGNYIIATGMYPPSVKVFDVREL 2481
BLAST of mRNA_H-paniculata_contig15977.3465.1 vs. uniprot
Match: A0A6G0X8Q3_9STRA (NUC153 domain-containing protein n=2 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0X8Q3_9STRA) HSP 1 Score: 100 bits (250), Expect = 3.490e-23 Identity = 47/73 (64.38%), Postives = 59/73 (80.82%), Query Frame = 1
Query: 1 LLSGKTLPQWLSEKKRRALSKDVEYRRRIELLQDFDFPTASQKVCVSPDGQYVIVAGTYPPQIKGMDVSQLWL 219
L +GKTLPQWL++K R+ALS+D +YRRR+ELLQDF FP +SQ+V +SPDG YVI +GTYPP +K DV L L
Sbjct: 17 LSAGKTLPQWLAQKTRKALSRDEDYRRRLELLQDFHFPVSSQRVVMSPDGHYVIASGTYPPSLKVYDVRDLSL 89
BLAST of mRNA_H-paniculata_contig15977.3465.1 vs. uniprot
Match: A0A485KJT6_9STRA (Aste57867_8214 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KJT6_9STRA) HSP 1 Score: 100 bits (249), Expect = 4.760e-23 Identity = 47/73 (64.38%), Postives = 58/73 (79.45%), Query Frame = 1
Query: 1 LLSGKTLPQWLSEKKRRALSKDVEYRRRIELLQDFDFPTASQKVCVSPDGQYVIVAGTYPPQIKGMDVSQLWL 219
L +GKTLPQWL++K R+ALS+D +YRRR+ELLQDF FP +SQ+V +SPDG YVI GTYPP +K DV L L
Sbjct: 18 LSAGKTLPQWLAQKTRKALSRDEDYRRRLELLQDFHFPVSSQRVTMSPDGHYVIATGTYPPSLKVYDVRDLSL 90
BLAST of mRNA_H-paniculata_contig15977.3465.1 vs. uniprot
Match: A0A2R5GXA8_9STRA (Nucleolar protein 10 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GXA8_9STRA) HSP 1 Score: 95.9 bits (237), Expect = 2.000e-21 Identity = 42/68 (61.76%), Postives = 55/68 (80.88%), Query Frame = 1
Query: 10 GKTLPQWLSEKKRRALSKDVEYRRRIELLQDFDFPTASQKVCVSPDGQYVIVAGTYPPQIKGMDVSQL 213
GKTLPQW+S+K R++L+KD EYRRRIEL+QDF FP S +V VSPDG+Y++ G+YPPQ+K D +L
Sbjct: 17 GKTLPQWISDKNRKSLAKDEEYRRRIELVQDFYFPATSGRVKVSPDGEYIVATGSYPPQVKVYDTREL 84
BLAST of mRNA_H-paniculata_contig15977.3465.1 vs. uniprot
Match: A0A1W0A822_9STRA (Nucleolar protein 10 n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A822_9STRA) HSP 1 Score: 94.7 bits (234), Expect = 5.150e-21 Identity = 44/71 (61.97%), Postives = 55/71 (77.46%), Query Frame = 1
Query: 1 LLSGKTLPQWLSEKKRRALSKDVEYRRRIELLQDFDFPTASQKVCVSPDGQYVIVAGTYPPQIKGMDVSQL 213
L +GKTLPQWL++K ++ALS+D EYRRR+EL+QDF FP AS V +SPDG Y+I GTYPP +K DV L
Sbjct: 552 LSAGKTLPQWLAQKTKKALSRDEEYRRRLELVQDFTFPIASHCVTMSPDGNYIIATGTYPPIVKVYDVRDL 622
BLAST of mRNA_H-paniculata_contig15977.3465.1 vs. uniprot
Match: A0A2P6TR30_CHLSO (Nucleolar 10 isoform B n=2 Tax=Chlorella sorokiniana TaxID=3076 RepID=A0A2P6TR30_CHLSO) HSP 1 Score: 94.4 bits (233), Expect = 6.950e-21 Identity = 41/68 (60.29%), Postives = 55/68 (80.88%), Query Frame = 1
Query: 10 GKTLPQWLSEKKRRALSKDVEYRRRIELLQDFDFPTASQKVCVSPDGQYVIVAGTYPPQIKGMDVSQL 213
GK +P WLS+KK++AL KD EYRRRIEL+QDF+FP Q++ V+PDGQY+ +G +PPQ++ DVSQL
Sbjct: 19 GKNIPAWLSDKKKKALRKDEEYRRRIELIQDFEFPAGCQRIKVTPDGQYIFASGYHPPQMRCYDVSQL 86 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig15977.3465.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig15977.3465.1 >prot_H-paniculata_contig15977.3465.1 ID=prot_H-paniculata_contig15977.3465.1|Name=mRNA_H-paniculata_contig15977.3465.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=73bp LLSGKTLPQWLSEKKRRALSKDVEYRRRIELLQDFDFPTASQKVCVSPDGback to top mRNA from alignment at H-paniculata_contig15977:5703..5921+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig15977.3465.1 ID=mRNA_H-paniculata_contig15977.3465.1|Name=mRNA_H-paniculata_contig15977.3465.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=219bp|location=Sequence derived from alignment at H-paniculata_contig15977:5703..5921+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig15977:5703..5921+ >mRNA_H-paniculata_contig15977.3465.1 ID=mRNA_H-paniculata_contig15977.3465.1|Name=mRNA_H-paniculata_contig15977.3465.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=438bp|location=Sequence derived from alignment at H-paniculata_contig15977:5703..5921+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |