prot_H-paniculata_contig1581.3375.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig1581.3375.1
Unique Nameprot_H-paniculata_contig1581.3375.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length177
Homology
[Close]
BLAST of mRNA_H-paniculata_contig1581.3375.1 vs. uniprot
Match: A0A6H5L8K1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8K1_9PHAE)

HSP 1 Score: 176 bits (447), Expect = 5.360e-53
Identity = 81/149 (54.36%), Postives = 110/149 (73.83%), Query Frame = 0 
Query:    8 VAGPLAAEPA----PVEPWVEETLDRYMNPIAFSRKNASLPSPQVVGEKVLTSTDGQSVKLTTAILKERPFWSKVSLIWTFKLADLEGNADGSVVVVCLVFDTWNGSVQIIENKVMKVDEVQQPIVGGSWKTKTGFGQLEIKVTPYWTG 152
            VAG     PA    P+  WV+E+++RY NP+AF+RKN  +P+P++  E  L    G++ KL   +LKER FWSKVSL WTF+LAD+EG+ +   +VV LVFD+W GS++I EN ++KVDE+Q+PI+GGSW TKT FG+LEIK+ PYWTG
Sbjct:    7 VAGDSGEAPAAAGQPMTTWVDESIERYSNPVAFARKNTPMPTPELQKEVSLAVPGGKNAKLEIHLLKERSFWSKVSLFWTFRLADVEGDDNAEQMVVALVFDSWTGSIEISENAIVKVDEIQKPIMGGSWITKTDFGRLEIKIVPYWTG 155
[Close]
BLAST of mRNA_H-paniculata_contig1581.3375.1 vs. uniprot
Match: D7FVY9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVY9_ECTSI)

HSP 1 Score: 140 bits (352), Expect = 1.210e-39
Identity = 61/110 (55.45%), Postives = 85/110 (77.27%), Query Frame = 0 
Query:   43 LPSPQVVGEKVLTSTDGQSVKLTTAILKERPFWSKVSLIWTFKLADLEGNADGSVVVVCLVFDTWNGSVQIIENKVMKVDEVQQPIVGGSWKTKTGFGQLEIKVTPYWTG 152
            +P+P++  E  L    G++ KL   +LKER FWSKVS+ WTF+L+D+EG+ +   +VV LVFD+W GS++I EN ++KVDE+Q+PI+GGSW TKT FG+LEIK+ PYWTG
Sbjct:    1 MPTPELQKEVSLAVPGGKNAKLEIHLLKERSFWSKVSIFWTFRLSDVEGDDNAEQMVVALVFDSWTGSIEISENAIVKVDEIQRPIMGGSWITKTDFGRLEIKIVPYWTG 110
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1581.3375.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L8K1_9PHAE5.360e-5354.36Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FVY9_ECTSI1.210e-3955.45Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 174..176
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..153
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 154..173
NoneNo IPR availableTMHMMTMhelixcoord: 149..171

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1581contigH-paniculata_contig1581:2716..5671 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1581.3375.1mRNA_H-paniculata_contig1581.3375.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig1581 2585..6365 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig1581.3375.1 ID=prot_H-paniculata_contig1581.3375.1|Name=mRNA_H-paniculata_contig1581.3375.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=177bp
MSAAINDVAGPLAAEPAPVEPWVEETLDRYMNPIAFSRKNASLPSPQVVG
EKVLTSTDGQSVKLTTAILKERPFWSKVSLIWTFKLADLEGNADGSVVVV
CLVFDTWNGSVQIIENKVMKVDEVQQPIVGGSWKTKTGFGQLEIKVTPYW
TGRALGASFMMTSVLFLLLFFISSQP*
back to top