mRNA_H-paniculata_contig1581.3375.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1581.3375.1
Unique NamemRNA_H-paniculata_contig1581.3375.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig1581.3375.1 vs. uniprot
Match: A0A6H5L8K1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8K1_9PHAE)

HSP 1 Score: 178 bits (451), Expect = 4.970e-50
Identity = 81/153 (52.94%), Postives = 111/153 (72.55%), Query Frame = 3 
Query:  129 SMSAAINDVAGPLAAEPAPVEPWVEETLDRYMNPIAFSRKNASLPSPQVVGEKVLTSTDGQSVKLTTAILKERPFWSKVSLIWTFKLADLEGNADGSVVVVCLVFDTWNGSVQIIENKVMKVDEVQQPIVGGSWKTKTGFGQLEIKVTPYWTG 587
            S +A   D     AA   P+  WV+E+++RY NP+AF+RKN  +P+P++  E  L    G++ KL   +LKER FWSKVSL WTF+LAD+EG+ +   +VV LVFD+W GS++I EN ++KVDE+Q+PI+GGSW TKT FG+LEIK+ PYWTG
Sbjct:    3 SATAVAGDSGEAPAAAGQPMTTWVDESIERYSNPVAFARKNTPMPTPELQKEVSLAVPGGKNAKLEIHLLKERSFWSKVSLFWTFRLADVEGDDNAEQMVVALVFDSWTGSIEISENAIVKVDEIQKPIMGGSWITKTDFGRLEIKIVPYWTG 155
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BLAST of mRNA_H-paniculata_contig1581.3375.1 vs. uniprot
Match: D7FVY9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVY9_ECTSI)

HSP 1 Score: 140 bits (352), Expect = 1.520e-36
Identity = 61/110 (55.45%), Postives = 85/110 (77.27%), Query Frame = 3 
Query:  258 LPSPQVVGEKVLTSTDGQSVKLTTAILKERPFWSKVSLIWTFKLADLEGNADGSVVVVCLVFDTWNGSVQIIENKVMKVDEVQQPIVGGSWKTKTGFGQLEIKVTPYWTG 587
            +P+P++  E  L    G++ KL   +LKER FWSKVS+ WTF+L+D+EG+ +   +VV LVFD+W GS++I EN ++KVDE+Q+PI+GGSW TKT FG+LEIK+ PYWTG
Sbjct:    1 MPTPELQKEVSLAVPGGKNAKLEIHLLKERSFWSKVSIFWTFRLSDVEGDDNAEQMVVALVFDSWTGSIEISENAIVKVDEIQRPIMGGSWITKTDFGRLEIKIVPYWTG 110
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1581.3375.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L8K1_9PHAE4.970e-5052.94Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FVY9_ECTSI1.520e-3655.45Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1581contigH-paniculata_contig1581:2585..6365 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-01_002670.1
Exons3
Model size1356
Cds size531
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1581.3375.1prot_H-paniculata_contig1581.3375.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1581 2716..5671 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929262.08142-UTR-H-paniculata_contig1581:2584..27151622929262.08142-UTR-H-paniculata_contig1581:2584..2715Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1581 2585..2715 +
1691480792.0825503-UTR-H-paniculata_contig1581:2584..27151691480792.0825503-UTR-H-paniculata_contig1581:2584..2715Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1581 2585..2715 +
1622929262.1570876-UTR-H-paniculata_contig1581:5671..63651622929262.1570876-UTR-H-paniculata_contig1581:5671..6365Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1581 5672..6365 +
1691480792.1232948-UTR-H-paniculata_contig1581:5671..63651691480792.1232948-UTR-H-paniculata_contig1581:5671..6365Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1581 5672..6365 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929262.1141582-CDS-H-paniculata_contig1581:2715..29101622929262.1141582-CDS-H-paniculata_contig1581:2715..2910Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1581 2716..2910 +
1691480792.0939023-CDS-H-paniculata_contig1581:2715..29101691480792.0939023-CDS-H-paniculata_contig1581:2715..2910Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1581 2716..2910 +
1622929262.1304307-CDS-H-paniculata_contig1581:4783..49181622929262.1304307-CDS-H-paniculata_contig1581:4783..4918Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1581 4784..4918 +
1691480792.1032195-CDS-H-paniculata_contig1581:4783..49181691480792.1032195-CDS-H-paniculata_contig1581:4783..4918Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1581 4784..4918 +
1622929262.1449-CDS-H-paniculata_contig1581:5470..56711622929262.1449-CDS-H-paniculata_contig1581:5470..5671Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1581 5471..5671 +
1691480792.1119528-CDS-H-paniculata_contig1581:5470..56711691480792.1119528-CDS-H-paniculata_contig1581:5470..5671Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1581 5471..5671 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1581.3375.1

>prot_H-paniculata_contig1581.3375.1 ID=prot_H-paniculata_contig1581.3375.1|Name=mRNA_H-paniculata_contig1581.3375.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=177bp
MSAAINDVAGPLAAEPAPVEPWVEETLDRYMNPIAFSRKNASLPSPQVVG
EKVLTSTDGQSVKLTTAILKERPFWSKVSLIWTFKLADLEGNADGSVVVV
CLVFDTWNGSVQIIENKVMKVDEVQQPIVGGSWKTKTGFGQLEIKVTPYW
TGRALGASFMMTSVLFLLLFFISSQP*
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mRNA from alignment at H-paniculata_contig1581:2585..6365+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1581.3375.1 ID=mRNA_H-paniculata_contig1581.3375.1|Name=mRNA_H-paniculata_contig1581.3375.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3781bp|location=Sequence derived from alignment at H-paniculata_contig1581:2585..6365+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCATTTAATCTGTCTCTCCACGCTAGACTTCACCCCACCCAGCACGTTGC
TAGTTCTGCTTCTGGTGTCCCGTACTCCTGTCTTCAACCATCTCATCAGC
GAAAGTTCTTGTCACGTACATCATCTAAAGCATGAGCGCCGCCATCAATG
ACGTCGCTGGGCCGCTCGCCGCGGAACCCGCTCCAGTGGAACCTTGGGTG
GAAGAGACACTTGACCGCTATATGAATCCTATTGCCTTCTCAAGAAAAAA
CGCTTCTCTACCATCACCTCAGGTCGTAGGCGAGAAGGTGCTTACCTCAA
CAGACGGTCAGAGCGTCAAGCTTACGGTGAGTATCGCTGTGCTCTTGCGT
TCAATAGGGGAGTGGGCGGGGGGGAAGACGGGGACGGGGGTTGAGGTATA
TATTGGAGAAAGAAGAGAAATTACAAACTATTTGACAGCAGGAACAGTCA
TGCTGAATCTGTAATGACATTTGTGTCCAGAGGGAGTAACGGATACATTA
GCGTTGCTGCGTCGGACTAATAATACCTCACTGTCGTTAATGTCGAAAAT
CGTCTTGTGCGTTGGTGAATCACACTGTGACTGTACTTGTGCAGCACTAG
CCAGCTGACTTCTGTCCAGCTCCGAGTCAGGTAGATTCGTAGATTCGTAG
ATTCGATCGACACTCCGTAACTTATGTCCATGATTTTGTAGTAGGCTGCT
GCCATTCCCGCACGATTCCGTTTAAGTCGAAACACACGGTAACACAGAGA
GGTTGGTGCTGATTGGCATTATTTGTATCCATCTGCCGTGGCACGTTCGA
TTTTCTTTTCGTGTCGTCGCCTTCTCTAGTCAGTACCAAAGTAATACATG
AAGAGTCGATCAACGCTATAGTGGTCATTCAATGCGTTTGAATTTTCAAA
TGCAAACACAAGTCAAATTAGTCTTCGCATTCAAGTCAATACTGAAACGA
CCATTTTATCGTTGGCCAGGTGTTCCATTGTATGCAGATGCACCGGCACT
CAGTTAAGGGGCCTGGTGGCGATGAGGTGCATGCGAGGGATAATATTTGA
TGATACTAGCACTCGGCCTTCGGAAGAGCTGAATGGTCACTTGATCGTAG
CTATTCGTAAATTCCAAACATCTGCAAGAACAGGAATTTGGACCCAAACT
TCAAACTGCGCCTTGAGCTCCAAAACAGGTGCACATACCGCAAACTGTTA
TTTGCTTCAAAATGCAGGTAAAAAATGTCCATGTATTTGCTTCAAAATGT
AGTTTAAAAAATGTCTATGTCGCTAGTCCAACCTCACCACCTTGTAACAG
CCATACGCAGTTTTTCCGTCACGACTGCCTATGTCAGCATATCATAATTT
GAGCTGTAGGCTATGTAAGGAAGGTGGTGATGGGTAGTTGTGTATTTGCG
ATTTGGAAGTTGACCTCACATACAACTCTTCTACATTTCTACCAAAATAT
GACAATATCAAAGATGTACAATCTGTGCTGCGAGCGACCCGAAGTATAAA
TCCTTGTTCGTTTGATTAGTCCGTCTGCCACACTTTTGACCAACGTTTCC
AAAATTTCGAGCGCTGCGCTCAACGAAACGTTGATTTATTGCCAAGCCCC
TGGCAATCTTACCCTTCCATGGTAGTTTTGTTGCCAGCACCTGTGCTCTT
GTCAGTTTCTGCTAGGCGCGCGCCATGGCGCCAATCGAAGGCCGTAAAAA
AAAGACTGTCAAGCAGCAAGTTTTTGGGTCTACTGGACACCTATGTCGAC
AGTTCTTGCGATAAATGTCCCGAGTACGTTCAATCCGCTTGCATCATCTG
TGCGTAGAATTTGTTAATTGCGGGATTGGACGCATTTTATGCTCTTGGTG
CTTGCTGACTGCGTGCCGTGGCGACGATCTGAACATAGGATCCCAACACG
AACCGTTCGTTGATGTTTACCTTTGCGAGGGATACGCTGTTTTGCATCAC
CCGCGTTGATTTGTACGAAATATAATGTGCATCTCTTGTACTCCATGCCA
CAAAGCGCTCTAAAACCCATGGCAATATCTGACTCAAGCAACGGCTTTTC
GTGATCCCCTCACGCTGAAAGGATAGAGCCGTGAGTCCCCGAATTGGAGT
AGAACTTCTATCCCTACACTGATATATATCAACAGTCATGCCATCCTGAA
GAATCAAATCTTGTGCCTCGAAACCGCCTTCGTTGGTGATCACTTGCAGA
CGGCCATCTTGAAGGAACGACCATTCTGGAGCAAGGTTTCCCTCATTTGG
ACTTTCAAGTTAGCGGACCTTGAGGGAAACGCGGACGGATCCGTCGTCGT
AGTTTGTCTTGTTTTTGACACATGGAACGGGTCGGTAAGCGTACCCAGCA
AGAATGTCATGCAAGCCGCGATACTACTACATGGATAAGCCCGCCGTGCT
CCCTGACCGTGCGTACTTGTCGCTTGGTTGGCTCCCACGACCTCATGAGC
TGTTGGTGTCAGCACCTATCATCACGAAGTTATCGCATCCATGTGTACAG
AAATGTAGGTCGCACGAGAACACCATCAGCTTGAACACATGCATCATCAT
CAATACCGTCGTCTGTTATAGTGAAAAAATTGATCACCACCTATGACGGT
GAATACGTGGGATTGCTACGTGCCATCACCAAGCTCTTCTGCTGACAAGG
CAAGATGGTAGGAGCGGAAGAATACGCTCCTTGTCGTCCACCCGTTTGAT
GAGCATGCGCGAATGGTGATGCTGCGGTCGACGATGAGCTATACCAAGAT
GGCGAAGTACTGGTATTCTTAAGAGTCGGTGTAGAGATATGAAGCTGTGA
GGCTACATGGCGAGTACAGTCTGGGCTGGGTACGCTCGCTCTGAGGAGTC
AAGATGCGAATTTGCATTGTACTATCATGTTCCCAGGTCCAGATTATTGA
GAACAAGGTGATGAAGGTCGACGAGGTACAACAGCCAATTGTCGGGGGTA
GCTGGAAAACAAAGACAGGCTTTGGACAGCTCGAGATCAAGGTTACCCCG
TACTGGACAGGTAGAGCACTGGGCGCGTCTTTTATGATGACTTCTGTTTT
ATTCTTGCTGTTATTTTTTATCAGCTCACAACCGTGATGTTTGTAGAAAT
TGGTTGTGAGATAGATGATTGTCGATCTCTGTTTTTGTGCGATCCCCTTT
GTTTCATGCCTTGAGAACAAAATTCGCTGCACTTGGATTGGCTAAAGAGC
AAATTGCCGTTTTTTCACGACTATTGGCAGATGCTCCTGTCTTTCGTGCT
TCCGTGATGATTCGTCTTTTTTGTTTTGTTAATATTCATGCTGGCGATCG
CGCCGTTCCGTCCGCACTCTGCGTCGCAGGCTACGAGTACGAGCTTTGGC
TCGAAGGGAATGAAGTGTACAAACATTTCGGGTAAAATTCGAGGCCGCAT
GTGGGAATAGCAATACCTCCTTTGCTGGAGATTACGTCTCGTCATTCCTC
ACTTGACTTGTTTTATGTGTCATCTTCCCTGGTTGTTTTTAATGAGTCAT
CTGAGTTCGGTCCCAATGGTCATCGAGTCAGACAAAAGCAATGGTGCTGT
CGTACTAGAACCGATCTTCCTATAACTCGCGGCGCAACGCCAAGCTGAGG
TGGACTTTGCGTCAGGATATGTTAGTGGAGGGTTGTAGTAGTTGTTGTGG
TTTGTGCTGTATGCAAATGTGAAGCAGGGGAAATACAAAAGTGTATTCTT
GTTGCTGGTATACGTAGTGTAGTGTTGTGCAATACCGACGTTTTACACCC
TTGTTTTCTTTAATCTACGTGAGAGGTATTG
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Coding sequence (CDS) from alignment at H-paniculata_contig1581:2585..6365+

>mRNA_H-paniculata_contig1581.3375.1 ID=mRNA_H-paniculata_contig1581.3375.1|Name=mRNA_H-paniculata_contig1581.3375.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1062bp|location=Sequence derived from alignment at H-paniculata_contig1581:2585..6365+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAGCGCCGCCATCAATGACGTCGCTGGGCCGCTCGCCGCGGAACCCGC
TCCAGTGGAACCTTGGGTGGAAGAGACACTTGACCGCTATATGAATCCTA
TTGCCTTCTCAAGAAAAAACGCTTCTCTACCATCACCTCAGGTCGTAGGC
GAGAAGGTGCTTACCTCAACAGACGGTCAGAGCGTCAAGCTTACGATGAG
CGCCGCCATCAATGACGTCGCTGGGCCGCTCGCCGCGGAACCCGCTCCAG
TGGAACCTTGGGTGGAAGAGACACTTGACCGCTATATGAATCCTATTGCC
TTCTCAAGAAAAAACGCTTCTCTACCATCACCTCAGGTCGTAGGCGAGAA
GGTGCTTACCTCAACAGACGGTCAGAGCGTCAAGCTTACGACGGCCATCT
TGAAGGAACGACCATTCTGGAGCAAGGTTTCCCTCATTTGGACTTTCAAG
TTAGCGGACCTTGAGGGAAACGCGGACGGATCCGTCGTCGTAGTTTGTCT
TGTTTTTGACACATGGAACGGGTCGACGGCCATCTTGAAGGAACGACCAT
TCTGGAGCAAGGTTTCCCTCATTTGGACTTTCAAGTTAGCGGACCTTGAG
GGAAACGCGGACGGATCCGTCGTCGTAGTTTGTCTTGTTTTTGACACATG
GAACGGGTCGGTCCAGATTATTGAGAACAAGGTGATGAAGGTCGACGAGG
TACAACAGCCAATTGTCGGGGGTAGCTGGAAAACAAAGACAGGCTTTGGA
CAGCTCGAGATCAAGGTTACCCCGTACTGGACAGGTAGAGCACTGGGCGC
GTCTTTTATGATGACTTCTGTTTTATTCTTGCTGTTATTTTTTATCAGCT
CACAACCGTGAGTCCAGATTATTGAGAACAAGGTGATGAAGGTCGACGAG
GTACAACAGCCAATTGTCGGGGGTAGCTGGAAAACAAAGACAGGCTTTGG
ACAGCTCGAGATCAAGGTTACCCCGTACTGGACAGGTAGAGCACTGGGCG
CGTCTTTTATGATGACTTCTGTTTTATTCTTGCTGTTATTTTTTATCAGC
TCACAACCGTGA
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