prot_H-paniculata_contig1575.3335.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig1575.3335.1
Unique Nameprot_H-paniculata_contig1575.3335.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length225
Homology
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BLAST of mRNA_H-paniculata_contig1575.3335.1 vs. uniprot
Match: D7FTF1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTF1_ECTSI)

HSP 1 Score: 155 bits (393), Expect = 1.530e-40
Identity = 80/132 (60.61%), Postives = 92/132 (69.70%), Query Frame = 0 
Query:   13 NGNWEHLGQLSSFAFNAALVACAKGAKAEAKEGSGDGWREALEVLQMMDVPPNRTNYGCAITACGYAGEVDACLNLLRDMIRGGATPTLGDYHNSLRACTATARGDAVLEILESMSSTGVEAKSHIYSMAAQ 144
            +G W + GQ SS AFNAALVACAKGA+ EA EG   GWREALEVL M+   P+ T YG AITACG+A  VDAC+ LL +M+R   TPTL DYH SLRAC A  R DA  EIL+SM S GVE  +  Y  AA+
Sbjct:  403 SGAWTYFGQASSLAFNAALVACAKGAEMEAAEGREGGWREALEVLDMVGPCPDLTGYGLAITACGFANNVDACVGLLGEMLRRDMTPTLADYHGSLRACAARRRDDAAQEILDSMGSEGVEPDARCYRFAAE 534
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BLAST of mRNA_H-paniculata_contig1575.3335.1 vs. uniprot
Match: A0A6H5J961_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J961_9PHAE)

HSP 1 Score: 63.2 bits (152), Expect = 5.640e-8
Identity = 41/98 (41.84%), Postives = 48/98 (48.98%), Query Frame = 0 
Query:   13 NGNWEHLGQLSSFAFNAALVACAKGAKAEAKEGSGDGWREALEVLQMMDVPPNRTNYGCAITACGYAGEVDACLNLLRDMIRGGATPTLGDYHNSLRA 110
            +G   +  Q SS AFNAALVACAKGA+ EA EG   GWREALEVL M+         G  + A       DA   +L  M   G  P    Y  +  A
Sbjct:  430 SGVCTYFNQASSLAFNAALVACAKGAEMEAAEGREGGWREALEVLDMVS--------GSLLGASIIRARDDAAREILDSMASEGVEPDARCYRFAAEA 519
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1575.3335.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FTF1_ECTSI1.530e-4060.61Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5J961_9PHAE5.640e-841.84Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 9..198
e-value: 3.3E-18
score: 68.1
IPR033443Pentacotripeptide-repeat region of PRORPPFAMPF17177PPR_longcoord: 21..135
e-value: 8.1E-7
score: 28.6
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 65..99
score: 8.703
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 100..134
score: 6.314

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1575contigH-paniculata_contig1575:17523..20599 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1575.3335.1mRNA_H-paniculata_contig1575.3335.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig1575 16860..21793 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig1575.3335.1 ID=prot_H-paniculata_contig1575.3335.1|Name=mRNA_H-paniculata_contig1575.3335.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=225bp
MDILHSTRAASDNGNWEHLGQLSSFAFNAALVACAKGAKAEAKEGSGDGW
REALEVLQMMDVPPNRTNYGCAITACGYAGEVDACLNLLRDMIRGGATPT
LGDYHNSLRACTATARGDAVLEILESMSSTGVEAKSHIYSMAAQVLQETS
KSIVASSSEGSAPWREHANRLWQLARDSEERTLERGITAHGDPDDREGDG
WDRIDVGGGSNLEAVGFEAAENAE*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011990TPR-like_helical_dom_sf
IPR033443PPR_long
IPR002885Pentatricopeptide_repeat