mRNA_H-paniculata_contig1575.3335.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1575.3335.1
Unique NamemRNA_H-paniculata_contig1575.3335.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig1575.3335.1 vs. uniprot
Match: D7FTF1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTF1_ECTSI)

HSP 1 Score: 190 bits (483), Expect = 1.180e-48
Identity = 103/185 (55.68%), Postives = 120/185 (64.86%), Query Frame = 2
Query:   62 VPPPRLTVAALTACARGGEWRKAMDILHST----------RAASDNGN--------WEHLGQLSSFAFNAALVACAKGAKAEAKEGSGDGWREALEVLQMMDVPPNRTNYGCAITACGYAGEVDACLNLLRDMIRGGATPTLGDYHNSLRACTATARGDAVLEILESMSSTGVEAKSHIYSMAAQ 562
            +PPPR TVAALTACARGG+W KA+ IL             R+ S +G+        W + GQ SS AFNAALVACAKGA+ EA EG   GWREALEVL M+   P+ T YG AITACG+A  VDAC+ LL +M+R   TPTL DYH SLRAC A  R DA  EIL+SM S GVE  +  Y  AA+
Sbjct:  350 LPPPRATVAALTACARGGQWEKAVGILRDVQNKSGGLEADRSGSGDGSSVGGRSGAWTYFGQASSLAFNAALVACAKGAEMEAAEGREGGWREALEVLDMVGPCPDLTGYGLAITACGFANNVDACVGLLGEMLRRDMTPTLADYHGSLRACAARRRDDAAQEILDSMGSEGVEPDARCYRFAAE 534          
BLAST of mRNA_H-paniculata_contig1575.3335.1 vs. uniprot
Match: A0A6H5J961_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J961_9PHAE)

HSP 1 Score: 99.8 bits (247), Expect = 3.680e-18
Identity = 73/190 (38.42%), Postives = 88/190 (46.32%), Query Frame = 2
Query:   62 VPPPRLTVAALTACARGGEWRKAMDILHSTR------AASDNGNWEH------------LGQLSSFAFNAALVACAKGAKAEAKEGSGDGWREALEVLQMMDVPPNRTNYGCAITACGYAGEVDACLNLLRDMIRGGATPTLGDYHNSLRACTATARGDAVLEILESMSSTGVEAKSHIYSMAAQVLQET 577
            +PPPR TVAALTACARGG+W KA+ IL   +          +G+ +H              Q SS AFNAALVACAKGA+ EA EG   GWREALEVL                                 DM+ G            L A    AR DA  EIL+SM+S GVE  +  Y  AA+   ++
Sbjct:  377 LPPPRATVAALTACARGGQWEKAVGILRDVQNNTGRVEVDRSGSGDHSSGNGGSGVCTYFNQASSLAFNAALVACAKGAEMEAAEGREGGWREALEVL---------------------------------DMVSGSL----------LGASIIRARDDAAREILDSMASEGVEPDARCYRFAAEAFGQS 523          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1575.3335.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FTF1_ECTSI1.180e-4855.68Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5J961_9PHAE3.680e-1838.42Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1575contigH-paniculata_contig1575:16860..21793 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score157.5
Seed ortholog evalue7.2e-36
Seed eggNOG ortholog2880.D7FTF1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.endonuclease activity
EggNOG OGsKOG4197@1,KOG4197@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons5
Model size1999
Cds size675
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929256.1886334-UTR-H-paniculata_contig1575:16859..169671622929256.1886334-UTR-H-paniculata_contig1575:16859..16967Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1575 16860..16967 +
1691480789.9999287-UTR-H-paniculata_contig1575:16859..169671691480789.9999287-UTR-H-paniculata_contig1575:16859..16967Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1575 16860..16967 +
1622929256.2012322-UTR-H-paniculata_contig1575:17500..175221622929256.2012322-UTR-H-paniculata_contig1575:17500..17522Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1575 17501..17522 +
1691480790.012642-UTR-H-paniculata_contig1575:17500..175221691480790.012642-UTR-H-paniculata_contig1575:17500..17522Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1575 17501..17522 +
1622929256.2743008-UTR-H-paniculata_contig1575:20599..217931622929256.2743008-UTR-H-paniculata_contig1575:20599..21793Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1575 20600..21793 +
1691480790.067817-UTR-H-paniculata_contig1575:20599..217931691480790.067817-UTR-H-paniculata_contig1575:20599..21793Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1575 20600..21793 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929256.2148862-CDS-H-paniculata_contig1575:17522..176301622929256.2148862-CDS-H-paniculata_contig1575:17522..17630Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1575 17523..17630 +
1691480790.029979-CDS-H-paniculata_contig1575:17522..176301691480790.029979-CDS-H-paniculata_contig1575:17522..17630Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1575 17523..17630 +
1622929256.225579-CDS-H-paniculata_contig1575:18149..182211622929256.225579-CDS-H-paniculata_contig1575:18149..18221Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1575 18150..18221 +
1691480790.0407312-CDS-H-paniculata_contig1575:18149..182211691480790.0407312-CDS-H-paniculata_contig1575:18149..18221Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1575 18150..18221 +
1622929256.2369792-CDS-H-paniculata_contig1575:19018..191851622929256.2369792-CDS-H-paniculata_contig1575:19018..19185Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1575 19019..19185 +
1691480790.0495229-CDS-H-paniculata_contig1575:19018..191851691480790.0495229-CDS-H-paniculata_contig1575:19018..19185Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1575 19019..19185 +
1622929256.256024-CDS-H-paniculata_contig1575:20271..205991622929256.256024-CDS-H-paniculata_contig1575:20271..20599Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1575 20272..20599 +
1691480790.0595796-CDS-H-paniculata_contig1575:20271..205991691480790.0595796-CDS-H-paniculata_contig1575:20271..20599Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1575 20272..20599 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1575.3335.1prot_H-paniculata_contig1575.3335.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1575 17523..20599 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1575.3335.1

>prot_H-paniculata_contig1575.3335.1 ID=prot_H-paniculata_contig1575.3335.1|Name=mRNA_H-paniculata_contig1575.3335.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=225bp
MDILHSTRAASDNGNWEHLGQLSSFAFNAALVACAKGAKAEAKEGSGDGW
REALEVLQMMDVPPNRTNYGCAITACGYAGEVDACLNLLRDMIRGGATPT
LGDYHNSLRACTATARGDAVLEILESMSSTGVEAKSHIYSMAAQVLQETS
KSIVASSSEGSAPWREHANRLWQLARDSEERTLERGITAHGDPDDREGDG
WDRIDVGGGSNLEAVGFEAAENAE*
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mRNA from alignment at H-paniculata_contig1575:16860..21793+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1575.3335.1 ID=mRNA_H-paniculata_contig1575.3335.1|Name=mRNA_H-paniculata_contig1575.3335.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4934bp|location=Sequence derived from alignment at H-paniculata_contig1575:16860..21793+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGAGATAGGGGTCGACCGAGATTCGAGCAGTAGTGGATTCGGGCGGTTGG GAGAGGGAGAGGTTCCGCCACCACGGTTGACCGTGGCCGCGCTGACGGCG TGCGCGAGGTGAGGGATATCCTGTACTGTATATAGTGGAAATCGTTCTAA TTTTCGTCTGTGTTTGCGGTTTTGTTTCTACAACATTTTTGATAGTTTTT AGGCTCTCGAAACTAGATCAATAAACACACACACACACAAGAATCTTGTC TATTCGGGGTTGCAGGGGTGGGTTTGCAGCGATGGGTTCCGGGACGGTGG GGCTGGGACTGTTTGTTGACAAAGTCTGTACTTCGTGTAGAGCAAGCAAA GAGGTACAAGACATAGCCGAAGAAACGAAATTGGTCAGGCTCCTGGTTTT CACATTATCAAATAGGAGCGATCCTACCGCAACAGCGCGGCGGCATCAAC TGAATAGTGTTGGTGAGTCATTCTACCATTTTCGGATGCATATGCCCAAT TTAGGCGGATCAGGATTCACGGCTAAAAACCCCTTTTGACTTACCGCATG TTGGGGTAGCCACCTTGAATCGAGGTAGCCACCCGTGTCGTGATCACTCC GTACGTCGGTCGGTTTCTTCCTTCTTCTTGTTCTCTCCCAGGGGTGGGGA GTGGCGGAAGGCAATGGACATATTGCATAGCACTCGAGCAGCGTCCGACA ACGGTAACTGGGAGCACCTGGGGCAGCTGTCATCGTTTGCCTTCAACGCC GCCCTAGTGGCATGCGCGAAGGTAAGAGATTACGGGTATTTTCAGATGAC CGGCAGCGTTACACACGACACAAGACCAAACCAGACCCGGGTCACTGCAT ATGTGTGTACCTGTACGGTTCCGTGACAGGTTGCCTTGTACGGCCGTATT CTCTCCGGTCGGTTCCGTTTAGCATTCCGGTCGGTATGTGGTCGGTTCTG TCAGATTTTACCGTTCATACGAAAAACCCTGGAAGTTGTTGTACGGTTTC ACGGGGGGGTGTGCGACGTGTTCTCGTTGGGTTGGCCAACCGAAAACGGA GAATGCCACACGGCTCTTTCTCCCATTTCCTTGGATCTGACCCCCTGCAT TTGCTTTGTTTTTACATGACACAGGCCATCCGTGCCACTTCAATGAGTGC CACGATTAGCGTTGTGGTCGTACGTTCAGGCGGAGTACGTGGCTTATCAG ATATTAGTTGGGTGGTGCTGTATCTCAACGCTGCTAATTTTCTCGTCTTG TCCTGCGTTTTTGTTCCTTGATTTTAACGGCATTTCAAAGGGAGCGAAGG CAGAGGCTAAAGAAGGAAGTGGTGACGGGTGGCGAGAGGCTTTGGAGGTC CTGCAGATGATGGTGCGCATGCGGGCGAATGCCATCATGAACACCTTTAA CGTTTCCATATACAAATTATTAAGTCCCTTGAGTTCGCCAGTGAATTAGC TAGCCAAGTTGATGAAAGAGAGATAGTGCTCCTTCCACAATCTTAGGTGC CCCGACTTTCGACGTTAAAAACGAAATTAGCTGGTTATGAAAATTTACGG CAAGATCGGCTAGAGCAGACAATAGGGTGTCGTAGCGACACAGTTCGAGA GGTGATCAGGCCCATGCGTCTTATATGCACAGTCCGTCACTCGTCATGTA TACGTTCATCTCTTTTCCATCCCTTGTCCGTGGGCCCCGAAAATGGCTCA GTAAACATACGTCGGCGGCATATATGTTTGTCACTAATAAGTACTGAAGA AGAGCGTATCAAAAGTGATGGCGAAGGGACAAGCTTGACCAAATGCTCGG GTACTGCCACAATTTCTAAAAGCAATATGCGTGTTGGTGTTGCTTCCGTG GCTGAACGTGGCGGGATTAAGCTTCTCGCTGGGGCATTCTTGTCACTTGT GCTGTTCTCAATAACCCAGACATTTCTCCCCTTTGCTGTTTCCTGTTTTG CTTCTGATTTTAAGGTTTGGGGATAAATACATATCGTTTGATCCGCCTCC CCCATCAGTTATCATGCAGTGTCTTAACTGTTGGCGAGTGTATGACTACA ATGAGCACACGACGCGTGTTTTTATTCGAATATTTTTCAAGATTCCAATG TAATGCGAACCCCCCCCCTCCCACGCCAAACGCCTACGTATGTACGTCGA TGTTGACAGGACGTACCGCCAAACCGGACAAACTACGGCTGTGCAATTAC GGCCTGTGGGTATGCTGGCGAGGTGGATGCGTGCCTGAATCTTCTGCGCG ACATGATTCGAGGTGGTGCTACCCCCACATTGGGGGACTACCACAACTCG CTTCGGGCGTGCACGGCAACAGCAAGGTGAGCAAACTTTAGCTTGATACA GCGGCTGAGCGATGCAGGTGCCGCAGCCTGACGTAGTGTTTATCACGCTG CGTAACACCTCCCCGAGTTATGACGATCGAAATCGAAATTCTTCAGAACT ATACGGCTTGTGACACCGAATGTTGCTTTGTGGAAAGGATCTTGGCGAGA CGGGTTTCTCACAAGAAAGACAAGTTCTTTCGACGGTGAAGGATGTTTGT TTGCTTATCCAAAAAACTAACCCTGGAAAGGTCCGAAGGTATCACCCAGC GTGAAGTGACACAACCTATAAACTACGGTAGTACCCAGCAATTCTGGATT AGTCGAGACACGTGACCATAGTAACTGAACAGTTTGAAAAAGCCTTTAGT GTGATGGCGCAATCGCGTTTTCTTTGCGGAGAACCATCGTTTTACACTAT GCGTCTCCGTCGGCTTTGCGCGATGTTTTTCTCTCTTACTTTGATTGGCC GATGACCCTTGCTTGTATCGCGGTATAGTGGTAATACTGCGCACTGGTGC CTGGCGTCGTTTTATACATACCCTGCTGGCACCCAGGTTGCTCCCGTCCT CGTCTCCCGCGTAGCGGAACTCTGCACTTCGTGTTCGGCTTTCGTCCTGT GTGATTTGTTTTTTGACGAACGAGGGGCTCGGGCAATGAAGTCGGAAAAA ATGCCGGTGCCACCTCACATGTCCTCCCTTGTGCCATAAGGCGAGAATGT TACGTACTCCCACCAACCCGCTTAACCGCCATGGTCACATTAAAACGTCA CTACGTTTGGATTTGCAGGGTTCGATTCCAAAACAATACTAAAGGCTTGT CGCAACATTGATATGCTCGTGTTTTTTCGTATTTTCGTACATCGTATTTG CTTGCTTGAACTTGTCGTGTTGGGCAAAGTATCCATATCTATTTTTCATC ATCTCTTTCGTACCGTATCTGAAGCCTAACGATTATGTATCATGCAAAGT ATCTACTCGCAAGTTCACGGCGTTCCGCATCAGAAGACATGCCTTGATAC CAGAAACTGCTTCCTCCCTTTGTGTGTACCATCACGTCACGCGGTTGGCT ACAATCATCTAGAGGTGACGCAGTGTTGGAAATCTTGGAGTCGATGAGTT CAACAGGCGTGGAGGCGAAGTCACATATTTACAGCATGGCGGCGCAAGTG CTCCAAGAAACATCGAAATCGATAGTCGCGTCTTCATCCGAAGGCAGCGC CCCTTGGAGGGAGCACGCCAATCGATTGTGGCAGCTTGCTCGAGATTCTG AGGAGAGAACATTGGAGCGAGGCATCACTGCTCATGGCGACCCTGATGAC AGGGAGGGTGACGGGTGGGACCGGATTGACGTAGGTGGGGGCTCGAATTT GGAAGCGGTTGGCTTTGAGGCCGCGGAGAATGCCGAATAGGAACAGCCGT TCAAGGAGAACGAGAGGAAGACTGTGACTGTTGAGTGATGAGATAGTTTG AGGCTATTGCTGGGTCATAGGATTCACGGTGCTTGTGTCAAATCTCCTGC CTTCGTGTTCGTGTCCAACGAGCGTAAGACATCGTGGGCCTCTCTGTCGT GATTTTGTGTTTAGTTGGGTAGTGCGTGAGGCCTCTTTGGGAGGGCTACT TTGTCTAACATTCCCGGTTGCTATTCTTCTCTTGACGCTCATACGGTGGC ACCCGCACGAAAAGCCTGGTTTGTGGGTTCACCATCTTCGTGTGCTTGCC TTGGGGCGATAAACTCAAAGAGTGCCAAACGCACTAAGGGAGTAGCAGGG TAAATGACTCAAAATCCAGAAAGCCAAGAAAGAGGCGAGATTGGGTGTGT ATAATATCCTACGGGTGTATAGGCACATACTCACGAAGGTATCACCGCGG TATACCGTCGGTGACATTGTAGGTGACCCCTGAGGTTATCTGTATTTCAT ACACCCCACCCAATTTTTTCAGGGAATTTCAATGTCACACAGGGCGACGT CGTATCATCCCGCCCCTGAGTGTGAAGCGGCACATGCATATTATTACCTC CACCCTTAAACATCGAAGCACGGGCTAGCTAGCTGCCTTCGACCAGTCGT CATACCGTGTGCATGCCGTGTATAGCGATAGGGTACCCCGCCTGATATCG TATGTATTCCAAGGAAGATTAATTCTGTGTGGAGAACGGAGTGACGTTCA ATGGACGACTTCCGTACCGTTTGGTGTTCTGTCAGTATGTTGGGAGGAGC ACGCCGTAACCAGCGTGTTCCGTGATGTGTTAGGGCATCTGTATAGTGCT GATTGGTGTAAAGGTGAATTACGTTGTAAAGCCCGGAGAGGTGCTTGCGG CCTGTTTCAATGAGGAGACCATGAACCTTCACTCAGGTGCTCTGCAACTA CACATACGGCACCTGCACTTTGCCTGGGATACCGCACACACGACTGCCTA ATGATGATGCTGCGATCAAACTGATGGCATAGTGCAGTCGGTGCTTTTCG TGTGATGAATAAATATACACTGTACTATTAAGCTAATCGTATATCACGAT TAAACATGAAAATATCGGCAAAATTGGCAGCAAATTGCAAAATAGATTTT GGTACTGTTGTTCGGTTATTGCCGATCTTTCCCG
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Coding sequence (CDS) from alignment at H-paniculata_contig1575:16860..21793+

>mRNA_H-paniculata_contig1575.3335.1 ID=mRNA_H-paniculata_contig1575.3335.1|Name=mRNA_H-paniculata_contig1575.3335.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1350bp|location=Sequence derived from alignment at H-paniculata_contig1575:16860..21793+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGACATATTGCATAGCACTCGAGCAGCGTCCGACAACGGTAACTGGGA
GCACCTGGGGCAGCTGTCATCGTTTGCCTTCAACGCCGCCCTAGTGGCAT
GCGCGAAGATGGACATATTGCATAGCACTCGAGCAGCGTCCGACAACGGT
AACTGGGAGCACCTGGGGCAGCTGTCATCGTTTGCCTTCAACGCCGCCCT
AGTGGCATGCGCGAAGGGAGCGAAGGCAGAGGCTAAAGAAGGAAGTGGTG
ACGGGTGGCGAGAGGCTTTGGAGGTCCTGCAGATGATGGGAGCGAAGGCA
GAGGCTAAAGAAGGAAGTGGTGACGGGTGGCGAGAGGCTTTGGAGGTCCT
GCAGATGATGGACGTACCGCCAAACCGGACAAACTACGGCTGTGCAATTA
CGGCCTGTGGGTATGCTGGCGAGGTGGATGCGTGCCTGAATCTTCTGCGC
GACATGATTCGAGGTGGTGCTACCCCCACATTGGGGGACTACCACAACTC
GCTTCGGGCGTGCACGGCAACAGCAAGGACGTACCGCCAAACCGGACAAA
CTACGGCTGTGCAATTACGGCCTGTGGGTATGCTGGCGAGGTGGATGCGT
GCCTGAATCTTCTGCGCGACATGATTCGAGGTGGTGCTACCCCCACATTG
GGGGACTACCACAACTCGCTTCGGGCGTGCACGGCAACAGCAAGAGGTGA
CGCAGTGTTGGAAATCTTGGAGTCGATGAGTTCAACAGGCGTGGAGGCGA
AGTCACATATTTACAGCATGGCGGCGCAAGTGCTCCAAGAAACATCGAAA
TCGATAGTCGCGTCTTCATCCGAAGGCAGCGCCCCTTGGAGGGAGCACGC
CAATCGATTGTGGCAGCTTGCTCGAGATTCTGAGGAGAGAACATTGGAGC
GAGGCATCACTGCTCATGGCGACCCTGATGACAGGGAGGGTGACGGGTGG
GACCGGATTGACGTAGGTGGGGGCTCGAATTTGGAAGCGGTTGGCTTTGA
GGCCGCGGAGAATGCCGAATAGAGGTGACGCAGTGTTGGAAATCTTGGAG
TCGATGAGTTCAACAGGCGTGGAGGCGAAGTCACATATTTACAGCATGGC
GGCGCAAGTGCTCCAAGAAACATCGAAATCGATAGTCGCGTCTTCATCCG
AAGGCAGCGCCCCTTGGAGGGAGCACGCCAATCGATTGTGGCAGCTTGCT
CGAGATTCTGAGGAGAGAACATTGGAGCGAGGCATCACTGCTCATGGCGA
CCCTGATGACAGGGAGGGTGACGGGTGGGACCGGATTGACGTAGGTGGGG
GCTCGAATTTGGAAGCGGTTGGCTTTGAGGCCGCGGAGAATGCCGAATAG
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