mRNA_H-paniculata_contig1573.3326.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1573.3326.1
Unique NamemRNA_H-paniculata_contig1573.3326.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig1573.3326.1 vs. uniprot
Match: D8LS23_ECTSI (HNH domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LS23_ECTSI)

HSP 1 Score: 310 bits (795), Expect = 3.360e-99
Identity = 168/307 (54.72%), Postives = 196/307 (63.84%), Query Frame = 2 
Query:   77 MRAFVEPYIFISI----SRWIHLYTPPCG-------SSNSVTSRVTCSLARDSKCLG-----LDSVKCNVSDIREQLKRRGYTPTGVR-TKAGVLGELIGLVRAEGFAPPHSV----------------EGNLRQRRNQHAGFVDRTTMETGPRGFPLCRFCQQETPSKMRTFCSNGCVHEHKIRSQGSYVRKCLSTRDGGQCAECGADAGGLYKRARQAWISEKLPLLRTSAVVQAVAGTPFEGMVPRAGSNARPTSGEFWHADHIVPVVLGGGQCGLNNFRTLCVPCHKASTKRLARERALSRRR 898
            MRAFV P I  SI     R + +     G       +++S T +   S    +  L      LD   C V+DIR+QL+RRGYTP   R TKA +L EL GLVRAEGFAPP +V                +G  +QR N  AG+VDR TME G RG+PLCRFC +E PS  RTFCS+ CVHEH+IR+QGSYVRKCL  RDGGQCAECG DA GLYKRAR AWI E   +++  AV   + GTPFEG +P  G   RPT G+FWHADHIVPVV GGGQC L N+RTLCVPCH A+TKRLA ERA  R R
Sbjct:    1 MRAFVAPTILFSIVRRSCRGLAVGASAAGRLPGCRTTASSCTVKRAASTETAATSLSGWPRRLDPDNCKVADIRQQLRRRGYTPPRDRQTKAALLEELRGLVRAEGFAPPDAVVRNDTVTREGPEGSEGDGKAQQRWNPEAGWVDRATMERGERGYPLCRFCNEEVPSARRTFCSDACVHEHRIRTQGSYVRKCLLVRDGGQCAECGVDAAGLYKRARAAWICEGSVVVKREAVALEMVGTPFEGKMPTKGMTRRPTQGKFWHADHIVPVVRGGGQCSLKNYRTLCVPCHAAATKRLAGERAAERAR 307
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BLAST of mRNA_H-paniculata_contig1573.3326.1 vs. uniprot
Match: A0A6H5JVH0_9PHAE (HNH domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVH0_9PHAE)

HSP 1 Score: 236 bits (602), Expect = 1.980e-72
Identity = 108/161 (67.08%), Postives = 121/161 (75.16%), Query Frame = 2 
Query:  422 METGPRGFPLCRFCQQETPSKMRTFCSNGCVHEHKIRSQGSYVRKCLSTRDGGQCAECGADAGGLYKRARQAWISEKLPLLRTSAVVQAVAGTPFEGMVPRAGSNARPTSGEFWHADHIVPVVLGGGQCGLNNFRTLCVPCHKASTKRLARERALSRRREA 904
            ME G RG+PLCRFC +E PS  RTFCS+ CVHEH+IR+QGSYVRKCL  RDGGQCAECG DA GLYKRAR AWI     + +  AV   + GTPFEG +P  G   RPT G+FWHADHIVPVV GGGQC L N+RTLCVPCH A+T+RLA ERA  R R A
Sbjct:    1 MERGGRGYPLCRFCNEEVPSARRTFCSDACVHEHRIRTQGSYVRKCLLVRDGGQCAECGVDAAGLYKRARAAWICGGSVVAKREAVALEMVGTPFEGKIPTKGMTRRPTQGKFWHADHIVPVVRGGGQCSLKNYRTLCVPCHAAATRRLAGERAAERARAA 161
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BLAST of mRNA_H-paniculata_contig1573.3326.1 vs. uniprot
Match: A0A4D9D4K6_9STRA (HNH domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D4K6_9STRA)

HSP 1 Score: 160 bits (405), Expect = 2.610e-39
Identity = 104/259 (40.15%), Postives = 127/259 (49.03%), Query Frame = 2 
Query:  239 SDIREQLKRRGYTPTGVRTKAGVLGELIGLVRAEGFA--PPHSVEGNLRQRRNQHAGFVDRTTMETGPRGFPLCRFCQQETPSKMRTFCSNGCVHEHKIRSQGSYVRKCLSTRDGGQCAECGADAGGLYKRARQA-WIS----------EKLPLLRTSAVVQAVAGTPFEGMV-------------------------------PRAGSNARP-TSGEFWHADHIVPVVLGGGQCGLNNFRTLCVPCHKASTKRLARER 880
            +++R  L+  G   TG RTKA +   L   +RA   A  P HS +     R +   G V++  +  G  G  LCR CQQE P K  TFCS  CVHEH++R+ GSYVRKCL  RD G+CA C  DA  LY + R+  W +          EK      + V + VAGT  EG V                               PR     RP  SG FWHADHI+PVV GGG  GL NFRTLCV CH+ +T  L R R
Sbjct:  324 AELRAHLRAMGMPATG-RTKAQLATRLHACLRARRLANFPSHSTD-----RYSDRRGKVNKADLARGDHGRALCRLCQQECPKKANTFCSPACVHEHRLRTSGSYVRKCLLVRDKGRCALCAIDAHALYLQVRRTCWAAGWGGRDRGKGEKALGGIQAVVDEKVAGTVLEGKVKVQGLKQGKCQVGDGVGKDWVTSTVYGAQTRPRPRRRRRPFNSGLFWHADHILPVVEGGGLRGLENFRTLCVACHQTATAELRRRR 576
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BLAST of mRNA_H-paniculata_contig1573.3326.1 vs. uniprot
Match: K8YUI5_NANGC (Hnh endonuclease (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8YUI5_NANGC)

HSP 1 Score: 140 bits (354), Expect = 7.390e-35
Identity = 96/239 (40.17%), Postives = 116/239 (48.54%), Query Frame = 2 
Query:  239 SDIREQLKRRGYTPTGVRTKAGVLGELIGLVRAEGFA--PPHSVEGNLRQRRNQHAGFVDRTTMETGPRGFPLCRFCQQETPSKMRTFCSNGCVHEHKIRSQGSYVRKCLSTRDGGQCAECGADAGGLYKRARQA-WIS------EKLPLLRTSAVVQAVAGTPFEGMV-------------------------------PRAGSNARP-TSGEFWHADHIVPVVLGGGQCGLNNFRTL 832
            +++R  L+  G   TG RTKA +   L   +RA   A  P HS +     R +   G V++  +  G  G  LCR CQQE P K  TFCS  CVHEH++R+ GSYVRKCL  RD G+CA C  DA  LY   R+  W +      EK      + V + VAGT  EG V                               PR     RP  SG FWHADHI+PVV GGG  GL NFRTL
Sbjct:   29 AELRAHLRALGVPATG-RTKAQLAIRLHACLRARRLANFPSHSTD-----RYSDRRGKVNKADLARGDHGRALCRLCQQECPKKANTFCSPACVHEHRLRTSGSYVRKCLLVRDKGRCALCTIDAHALYLHVRRTCWAAGWGGKGEKALGGIQAVVDEKVAGTILEGKVKVRGLKQGKCQVGDGVGKAWVTSTVYGAQTRPRPRRPRRPFNSGLFWHADHILPVVEGGGLRGLENFRTL 261
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BLAST of mRNA_H-paniculata_contig1573.3326.1 vs. uniprot
Match: A0A5M8SK72_9BACT (HNH endonuclease n=1 Tax=Acidobacteria bacterium AB60 TaxID=1230846 RepID=A0A5M8SK72_9BACT)

HSP 1 Score: 119 bits (299), Expect = 2.170e-28
Identity = 66/165 (40.00%), Postives = 84/165 (50.91%), Query Frame = 2 
Query:  401 GFVDRTTMETGPRGFPLCRFCQQETPSKMRTFCSNGCVHEHKIRSQGSYVRKCLSTRDGGQCAECGADAGGLYKRARQAWISEKLPLLRTSAVVQAVAGTPFEGMVPRAGSNARPTSGEFWHADHIVPVVLGGGQCGLNNFRTLCVPCHKASTKRLARERALSRR 895
            G+VDR  +  GP G  LCR+C  E P    TFCS  CVHE K+R+Q  YVR+ +  RD G C+ C  D     +R R +                   G     ++   G  A  T    W ADHI+PV+ GGGQC LNN RTLC+ CH+A+T  L R    +RR
Sbjct:    4 GWVDRKAVPRGPNGRGLCRWCSLEVPKGRYTFCSEDCVHEWKLRTQPGYVREQVFKRDKGFCSSCRLDTLAEARRLRYS------------------RGAARRALLEHWGLKAY-TRKSLWDADHIIPVIEGGGQCDLNNLRTLCLLCHRAATLELRRRIVAARR 149
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BLAST of mRNA_H-paniculata_contig1573.3326.1 vs. uniprot
Match: UPI00131E5CA1 (HNH endonuclease n=1 Tax=Granulicella sp. S156 TaxID=1747224 RepID=UPI00131E5CA1)

HSP 1 Score: 115 bits (288), Expect = 9.290e-27
Identity = 67/169 (39.64%), Postives = 85/169 (50.30%), Query Frame = 2 
Query:  374 LRQRRNQHAGFVDRTTMETGPRGFPLCRFCQQETPSKMR-TFCSNGCVHEHKIRSQGSYVRKCLSTRDGGQCAECGADAGGLY---KRARQAWISEKLPLLRTSAVVQAVAGTPFEGMVPRAGSNARPTSGEFWHADHIVPVVLGGGQCGLNNFRTLCVPCHKASTKRL 868
            L  R    AG   RT +  GP G PLCR+CQ E  ++ R TFCS  CVH+ ++RS   Y+R  +  RD G C  CG D    Y   KR+R    +E L L     V                   AR +    W ADH++PV  GGGQC L+N RTLC+PCH+ +T  L
Sbjct:    4 LPSRILSEAGHAHRTALPVGPNGLPLCRWCQLEILARRRRTFCSEYCVHQWRLRSDPGYLRDQVFARDRGICTACGTDTVAAYATLKRSRGKARAEALALWGLKTV------------------QARRS---LWDADHVLPVAEGGGQCDLDNIRTLCLPCHREATADL 151
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BLAST of mRNA_H-paniculata_contig1573.3326.1 vs. uniprot
Match: UPI001EF5F0AD (HNH endonuclease n=1 Tax=Occallatibacter savannae TaxID=1002691 RepID=UPI001EF5F0AD)

HSP 1 Score: 114 bits (285), Expect = 1.910e-26
Identity = 61/161 (37.89%), Postives = 87/161 (54.04%), Query Frame = 2 
Query:  386 RNQHAGFVDRTTMETGPRGFPLCRFCQQETPSKMRTFCSNGCVHEHKIRSQGSYVRKCLSTRDGGQCAECGADAGGLYKRARQAWISEKLPLLRTSAVVQAVAGTPFEGMVPRAGSNARPTSGEFWHADHIVPVVLGGGQCGLNNFRTLCVPCHKASTKRL 868
            R    G+VDR ++  GP G  LCR+C  E P +  TFCS+ CVHE K+R+Q +Y+R+ +  RD G CA C  D     ++ R +  + +  LL               G+  R+  +        W ADHIVPV+ GGG+C L+N RTLC+ CH++ T  L
Sbjct:    2 RAMKGGWVDRGSVPRGPNGRGLCRWCSLEVPKRRFTFCSDYCVHEWKLRTQPAYLREKVFERDRGICASCSTDTLAAARKLRFSRGAARATLLM------------HWGLRTRSRKS-------LWDADHIVPVIEGGGECDLSNIRTLCLRCHRSETTAL 143
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BLAST of mRNA_H-paniculata_contig1573.3326.1 vs. uniprot
Match: A0A239JR82_9BACT (HNH endonuclease n=1 Tax=Granulicella rosea TaxID=474952 RepID=A0A239JR82_9BACT)

HSP 1 Score: 114 bits (285), Expect = 2.020e-26
Identity = 65/162 (40.12%), Postives = 86/162 (53.09%), Query Frame = 2 
Query:  386 RNQHAGFVDRTTMETGPRGFPLCRFCQQETPSKMR-TFCSNGCVHEHKIRSQGSYVRKCLSTRDGGQCAECGADAGGLYKRARQAWISEKLPLLRTSAVVQAVAGTPFEGMVPRAGSNARPTSGEFWHADHIVPVVLGGGQCGLNNFRTLCVPCHKASTKRL 868
            R    G V+   +  GP G PLCR+C  E  +K R TFCS+ CVH+H++R+   Y+R  +  RD G CA C AD   +Y              L+ S      AG    GM      +AR +    W ADHI+PV  GGGQC L+N RTLC+PCH+ +T +L
Sbjct:    5 RTLPGGRVEPHILARGPNGLPLCRWCDLEILAKRRRTFCSDYCVHQHRLRTDPGYLRDQVFARDRGLCALCQADTVAIYAA------------LKRSRGAAREAGLSIYGMKT---IHARRS---LWDADHILPVAEGGGQCDLDNLRTLCLPCHREATAQL 148
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BLAST of mRNA_H-paniculata_contig1573.3326.1 vs. uniprot
Match: A0A7S4FBB3_CHRCT (Hypothetical protein n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4FBB3_CHRCT)

HSP 1 Score: 119 bits (297), Expect = 2.270e-26
Identity = 79/232 (34.05%), Postives = 108/232 (46.55%), Query Frame = 2 
Query:  239 SDIREQLKRRGYTPTGVRTKAGVLGELIGLVRAEGF--APPHSVEGNLRQRRNQHAGFVDRTTMETGPRGFPLCRFCQQETPSKMRTFCSNGCVHEHKIRSQGSYVRKCLSTRDGGQCAECGADAGGLYKRARQAWISEKL-----PLLRTSAVVQAVAGTPFEGMVPRA------GSNARPTSGEFWHADHIVPVVLGGGQCGLNNFRTLCVPCHKASTKRLARERALSRR 895
            S IR +L++ G    G   K  ++  L+   RAE    A P ++     +  ++ AG ++    E        CR C +      R+FC N C H H +R+ GSY+RK L  RD G C+ C  +A   Y   R    + +L     P   T   +   A +        A      G   R   G FW ADH++PV LGGG CGL N RTLC PCH + + R AR+RAL RR
Sbjct:   42 SAIRNELRQLGMK-AGSLNKTAMVCRLVRARRAESTIEAGPGNLASPPSRFDSERAGCIEGRLDE--------CRVCARSICPPRRSFCCNECAHSHLLRTDGSYLRKALLVRDAGVCSICQCNAERAYLEVRALLRAARLEDSTRPEEETLEDLLQNARSELRHFHGHARVSSGRGRRRRLKKGSFWQADHVLPVYLGGGSCGLRNLRTLCTPCHASVSARQARDRALGRR 264
[Close]
BLAST of mRNA_H-paniculata_contig1573.3326.1 vs. uniprot
Match: E8X0I7_GRATM (HNH endonuclease n=2 Tax=Granulicella TaxID=940557 RepID=E8X0I7_GRATM)

HSP 1 Score: 114 bits (285), Expect = 3.160e-26
Identity = 64/174 (36.78%), Postives = 90/174 (51.72%), Query Frame = 2 
Query:  350 PPHSVEGNLRQRRNQHAGFVDRTTMETGPRGFPLCRFCQQETPSKMR-TFCSNGCVHEHKIRSQGSYVRKCLSTRDGGQCAECGADAGGLYKRARQAWISEKLPLLRTSAVVQAVAGTPFEGMVPRAGSNARPTSGEFWHADHIVPVVLGGGQCGLNNFRTLCVPCHKASTKRL 868
            PP +++G          G +    +  GP G PLCR+C+ E  +K R TFCS+ CVH+H++R+   Y+R  +  RD G CA C AD   +Y   ++A  + +L            AG    GM       +       W ADHI+PV  GGGQC L+N RTLC+PCH+  T +L
Sbjct:   19 PPRTLQG----------GRIKPKALPIGPLGKPLCRWCELEILAKRRRTFCSDYCVHQHRLRTDPGYLRDQVFARDHGLCALCQADTPAIYAALKRARGASRL------------AGLSLYGMKTITSRRS------LWDADHILPVAEGGGQCDLDNLRTLCLPCHREVTAQL 164
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1573.3326.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LS23_ECTSI3.360e-9954.72HNH domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5JVH0_9PHAE1.980e-7267.08HNH domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A4D9D4K6_9STRA2.610e-3940.15HNH domain-containing protein n=2 Tax=Monodopsidac... [more]
K8YUI5_NANGC7.390e-3540.17Hnh endonuclease (Fragment) n=1 Tax=Nannochloropsi... [more]
A0A5M8SK72_9BACT2.170e-2840.00HNH endonuclease n=1 Tax=Acidobacteria bacterium A... [more]
UPI00131E5CA19.290e-2739.64HNH endonuclease n=1 Tax=Granulicella sp. S156 Tax... [more]
UPI001EF5F0AD1.910e-2637.89HNH endonuclease n=1 Tax=Occallatibacter savannae ... [more]
A0A239JR82_9BACT2.020e-2640.12HNH endonuclease n=1 Tax=Granulicella rosea TaxID=... [more]
A0A7S4FBB3_CHRCT2.270e-2634.05Hypothetical protein n=1 Tax=Chrysotila carterae T... [more]
E8X0I7_GRATM3.160e-2636.78HNH endonuclease n=2 Tax=Granulicella TaxID=940557... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1573contigH-paniculata_contig1573:15174..20649 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score310.8
Seed ortholog evalue7.2e-82
Seed eggNOG ortholog2880.D8LS23
KEGG koko:K10876,ko:K14440
Hectar predicted targeting categoryother localisation
EggNOG free text desc.annealing helicase activity
EggNOG OGsCOG0553@1,KOG1000@2759
EC3.6.4.12
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03036,ko03400
Exons7
Model size1424
Cds size963
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929255.1974614-UTR-H-paniculata_contig1573:15173..155581622929255.1974614-UTR-H-paniculata_contig1573:15173..15558Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1573 15174..15558 -
1691480789.4111826-UTR-H-paniculata_contig1573:15173..155581691480789.4111826-UTR-H-paniculata_contig1573:15173..15558Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1573 15174..15558 -
1622929255.3147528-UTR-H-paniculata_contig1573:20573..206491622929255.3147528-UTR-H-paniculata_contig1573:20573..20649Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1573 20574..20649 -
1691480789.5079892-UTR-H-paniculata_contig1573:20573..206491691480789.5079892-UTR-H-paniculata_contig1573:20573..20649Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1573 20574..20649 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929255.2129006-CDS-H-paniculata_contig1573:15558..158101622929255.2129006-CDS-H-paniculata_contig1573:15558..15810Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1573 15559..15810 -
1691480789.4209583-CDS-H-paniculata_contig1573:15558..158101691480789.4209583-CDS-H-paniculata_contig1573:15558..15810Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1573 15559..15810 -
1622929255.224063-CDS-H-paniculata_contig1573:15998..160701622929255.224063-CDS-H-paniculata_contig1573:15998..16070Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1573 15999..16070 -
1691480789.428632-CDS-H-paniculata_contig1573:15998..160701691480789.428632-CDS-H-paniculata_contig1573:15998..16070Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1573 15999..16070 -
1622929255.236237-CDS-H-paniculata_contig1573:16541..166731622929255.236237-CDS-H-paniculata_contig1573:16541..16673Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1573 16542..16673 -
1691480789.4409137-CDS-H-paniculata_contig1573:16541..166731691480789.4409137-CDS-H-paniculata_contig1573:16541..16673Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1573 16542..16673 -
1622929255.258553-CDS-H-paniculata_contig1573:17549..176061622929255.258553-CDS-H-paniculata_contig1573:17549..17606Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1573 17550..17606 -
1691480789.4536927-CDS-H-paniculata_contig1573:17549..176061691480789.4536927-CDS-H-paniculata_contig1573:17549..17606Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1573 17550..17606 -
1622929255.2746792-CDS-H-paniculata_contig1573:18559..187251622929255.2746792-CDS-H-paniculata_contig1573:18559..18725Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1573 18560..18725 -
1691480789.4746773-CDS-H-paniculata_contig1573:18559..187251691480789.4746773-CDS-H-paniculata_contig1573:18559..18725Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1573 18560..18725 -
1622929255.2876656-CDS-H-paniculata_contig1573:19757..198501622929255.2876656-CDS-H-paniculata_contig1573:19757..19850Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1573 19758..19850 -
1691480789.4885116-CDS-H-paniculata_contig1573:19757..198501691480789.4885116-CDS-H-paniculata_contig1573:19757..19850Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1573 19758..19850 -
1622929255.3027909-CDS-H-paniculata_contig1573:20382..205731622929255.3027909-CDS-H-paniculata_contig1573:20382..20573Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1573 20383..20573 -
1691480789.4983623-CDS-H-paniculata_contig1573:20382..205731691480789.4983623-CDS-H-paniculata_contig1573:20382..20573Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1573 20383..20573 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1573.3326.1prot_H-paniculata_contig1573.3326.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1573 15559..20573 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1573.3326.1

>prot_H-paniculata_contig1573.3326.1 ID=prot_H-paniculata_contig1573.3326.1|Name=mRNA_H-paniculata_contig1573.3326.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=321bp
MRAFVEPYIFISISRWIHLYTPPCGSSNSVTSRVTCSLARDSKCLGLDSV
KCNVSDIREQLKRRGYTPTGVRTKAGVLGELIGLVRAEGFAPPHSVEGNL
RQRRNQHAGFVDRTTMETGPRGFPLCRFCQQETPSKMRTFCSNGCVHEHK
IRSQGSYVRKCLSTRDGGQCAECGADAGGLYKRARQAWISEKLPLLRTSA
VVQAVAGTPFEGMVPRAGSNARPTSGEFWHADHIVPVVLGGGQCGLNNFR
TLCVPCHKASTKRLARERALSRRREAQGGSDRGGSNDCGHRGTKQKTVRV
ARSIHTLSSSCVDNGDRDGD*
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mRNA from alignment at H-paniculata_contig1573:15174..20649-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1573.3326.1 ID=mRNA_H-paniculata_contig1573.3326.1|Name=mRNA_H-paniculata_contig1573.3326.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=5476bp|location=Sequence derived from alignment at H-paniculata_contig1573:15174..20649- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGTCAATCTGTAGATGCAATCTCTGTAGCCCAAGCGTAGAATTTACAATA
GCTTGGACAGATTTTGATTTTGAACTATGAGAGCCTTCGTAGAACCTTAC
ATATTTATTTCCATATCGAGATGGATTCACTTGTATACGCCTCCCTGTGG
CAGTAGCAACAGTGTGACCAGTAGAGTCACCTGCAGCCTGGCACGCGATT
CGAAGTGTCTGGGGCTGGACTCTGTCAAGTGCAATGTCAGCGACATACGT
GAACAGCTGAAGCGAAGGTATGTACGATATATGTCTCAATAAGGCTCTAA
GGGCCTTGCAGTTGTGGTGTCATGGATCGTGTGTATTCCCGCTGTTGCTA
TCACAGCGACAGCGGCAGTGGACGGCGCATGCTACATGCGTATGGGTTGC
AAGGCTATGTTGGCAATGCTCTTCGGTACCTCGACAGTTTGAGCAAACCA
AATACATGTATTCAATATTATCTCTAAGAGAGGATGGTTTTCAGGGAGGC
ATGCATAGGATTTTGCTTGATTTGGGGGCTGGTCAAAGGTTGCGAAGAAA
TTGCTGATGTTTATTATTATCGCAACACTCTGTTTCCGCCGAACGAGGCG
GTTTTATTCCCCTCGTGCAGACACACACAGTGAACCATACGGTGACATAC
ACGATATTGGTTTGTGCCACCCTTCGTCTTTCGGCATTCTCTTTGTTTTT
CCGTGCACACAAATGGAGAATGTTGCTTTGATTCACATACATACATGTTT
ATATGCCCGGCGAACTTCGTGTTGTGCCCTTCATATGTATGTCCGTTAGA
GGCTACACACCGACAGGGGTACGAACAAAAGCAGGCGTATTGGGAGAGCT
GATAGGCCTCGTGCGGGCAGAGGGTTTCGCGCCTCCACACAGGTGCAGTA
CGTAGCGTTGATGAGCAAATGACGAATAAATTACCGTGTTTTTACCGAGG
GTCAGAGACGTATCTCTCAGTTTAGAACCCTTGGCCCCCCGCATTTTGGC
TACCAATTTTCTGTATGTCACTTTAGTTGTACTGCCGTGTATACAGATAC
AGACATGCACAGTTGGATTGATTTTTCAACACTGTGCATCTGGAAGTTTC
AAAAGACGAATCCCTGTAAGATTTCAGAGAGAGTTGTTTCTGTTATTTCA
GCCATTCCAGCACCAGAACCTAAACTCCATACCAAGTATCTATAGGCATG
CTGCGTGTGAAATCAAAAGACCACCACCTAGTTGTGAATATGAATAGTCT
GTACTATTAGATTTTTCTCATGTCGATCGCTCAGATCCGCGGTTAATGAC
CACGGAAATAGGCAATGACACCGTATATATACACATTGCTGGACCCGTTT
GGATGAAAAAGTAGCACAATATATGCGGTGGGAGGGGTATCTGGTTGGTA
CATGTATTTCTGAAAGCGAGAATATTGGCGCGTGACCCCCCCCCCCCCCC
CCCTCCGATTTGAGGCTAAAAAAAGTGTTAGGGCATAGGATCTCATACTG
AGAGATACTTTCCCGCTTGCTGAGGGTGAGCTAATACCATCCACTGCAAA
CGCTTTTCTCTGACCCTTTGACCGCGACAAGTTCGAGATCCTCACTGCAG
GAGCGATAGTATGTGTCATACGTCGAGCCCAAACGAACGACTTGGCCATT
ACACATTCATGACCCCCATCCATACCGTTAATCGTTATTTTTTTATCGGA
AAACCCTGTGCAATTACTACTGAAGTTATACAGGTCAGCCGGTCAGCATA
CATGCGACCATGACGACGGTGTTTTGCCATGGCGTGCAAAATTGCCCCCA
CCTGCTTCATATCGCCTTGCAGCGTCGTGTGCAACCATATCTGTGCGATA
GCGCTACTGAAGAGAGCTGTCGTACCTGAACCTGAACTCGCCTTCGCGGT
TCGTTCGCCTCCCTCGTGCACCAGCGTTGAAGGTAACTTGCGACAGCGGA
GGAATCAACACGCCGGATTCGTGGACCGGACCACGATGGAGACCGGACCC
AGAGGGTTTCCACTCTGTCGCTTCTGCCAGCAAGAGACTCCCAGCAAAAT
GAGGACATTTTGTTCAAATGGCTGCGTGCACGAGCACAAAGTGAGCATAT
TTTCGACGTAATTCAGCCCAAGTCAGCGGCAGTACTGAGAGGACTGTTTG
TTTAGCAGCCACTTTTCGGGCTGCAAATTCCAAGAATTTCAGATGATGCC
GACAGACACTGTTGAAGGTGGCGTAGACAGGGCTTTTGTACGGGCGGAAT
TGTCGGCGTTGGTGCAATGCTCTCCTGTAATAGTCACAAGGCAACAACCT
AACGGTTGTCGTACTGCTGCTGGGCAATGTGTATCGGATACGTCGTGCTC
TATAGGCGGTGTCTGCCTCGTGAAATGTGCAAGCTTCAATCTTTACTGCT
GAATTTTTGAAGTAGTTCGCGTTGTTCTATCGGAATAAATCTATGAAATT
TGAAGCTTTCACCCCCTCCGAAAAAGGTGGCTGCGAAAACTGGACCAAGC
ACCCACACGGTGTGTACTGTTCCACAACAATTTTCATCCATTTTTACCCA
CGATAAATGCTGTTACACTATATTCCAGTATTTTTCGTTTTTTTACTCGC
GCCAGAGAGATGGACAAATGGATTACGAGCGAAGAAAAACGCAGCTTTAC
ATTTTTCCGTAACAGTTCATTACAGTATAAGACCCACCTACAGCTCATGT
TCAGCAGAGTTGGTGTAGCTGGAGCATGCTGCCACACGAGTTGTATCATC
CTGCAGTGTTACATGCTTCCTTTTTCCTCTAATAGGCGTTTTGCACTGTG
AAATGACGAAGTAATTTTTTCTCGTTCAATATTTCAACGCCAGAAGTGAT
CCGCATGCATTCGCCATCTAACGTTCTTTTTTTTGTGCCACTCGTGTGTC
GTTTCGGAATAAGCTTGTTACCTTTCCTTGTCTGGCTCTGAAATCCCCTT
TCAACCTGTGTGTGTTGGTGTTATGACTCTTTATTGCTGAGTTACCCAGA
TTGTTTTACGCGTGTTTTGTAAAACGAATCACTTTTCGAGCAGATCAGAT
CGCAAGGGTCGTACGTGCGCAAGTGCCTATCCACCCGGGACGGCGGCCAG
GTGAGAACGTGCTTACTATCTAGTTTGTAACACTAGGTAGGTAGCCGCTT
CCTCACCCTGAGTTTTATGTTCGATGCGTCGCACTGCTTGCTCTTGCTCA
CTATATTAGTTGACGTTTTTGTTTTCGACAAAGGCGTGAACAACGCGCTC
CACAGGACAAGTAGTGGCCAATCTCCCTCACTGGTTCCTTCTTGCACACG
TGATACCATGCTTATCCGTGTATAGTAGTCGCTCGTCCTCTTCATGTCGC
TATACATGGATGTCCTTCTATGTACCCAAGTTGTGAATTCTAGCCCCACT
CTCGAGGCACTTCAACCCACCCATCCACCCCCTTCATTGGCGAAGGCACA
GGGCGGTGGGAGGGTTATGCAAAGCAGTGGGACAAAAAAAAATTCAAGTC
TTTTTTTGTCGCTGGCAGTCATTCGGGCTTCCATGACGGACGGAAAGGAC
CCTCGGATGTGAGAGGGGTGCCTCGTCATGCGGCTGACTTCCTTGCCCCG
CTCTCTTCTTGTGCTTGTTGTTGTGCACACAGTTCGCAGAAGTCTCGCTT
CATTTCAAAACAAAGACGTTTCGTTCGAACTCGCATTGTTGTAGTCCATT
ATTGCTTGCACAAACAGGCGCCGGGCTTTCTTCGGACTAATACACACATG
CACACACACACACACACACACACACACACACACACACACCCGTAATCGTA
TCTTGGCTTTTCATTTTGGCAACAACTTACGAAACAACGACGGGGGGGGG
GGAAAGGTATGAGTGCCCTCTCTTCCGCATCTTGCTCTTCACATATTTGT
TACTTTGCGTCCTTGTCTCTGCCACTGTTTATATGTCTCCACAACCGTTG
TTTTGCGTTATTGTGTGCTCACTCAGTGTGCGGAGTGCGGCGCAGACGCA
GGAGGGTTGTACAAACGTGCTAGGCAAGCGTGGATATCGGAAAAGCTCCC
GTTGTTGCGGACAAGTGCAGTCGTCCAGGCCGTGGCAGGGACGCCGTTCG
AGGGCATGGTGATGTTACGTTCTCCTGGTTAGCTTGATTGAATACATATT
CAAATCAGCATAAAGCGTATTACTGGTAGGCCAATTAAATCTGCTCATTC
AATGCAAACGTAACTCATCAACGTAAACGCGTGTCTGGCTCGTTCAGATT
TGCGTGAAACAATGAAGGTGGCGTATGATTTTGTTGTCCGACTTGAAAAG
CATCGACCCTTGTTAATTTCATGTTTCAGAACTTGTACACACCGCAATCA
TCTTTCTACAATGAGGGTGATCTTTGCTGTGTATGCGGCAGATAATCTTT
TGGAAAAGACGCTTCACCAAAAGCGATTGGAAAGATACCCACACACAAAC
CCACACACACACACTGTGTTTGTGAAGAACAGCAAAAATCATATGCGAAA
CGTTTCTTTCGTGAACGAATCTCTGGACAGTTGCACATTGATCGTGTGCA
ACGGCTGGTCTCTCTACCTAATATTCCAGGTGCCCCGCGCTGGCAGCAAC
GCCCGGCCAACGTCGGGGGAATTCTGGCATGCCGATCACATCGTGCCGGT
GGTAAGTTAGTCGAGATTCTTCATCGTTGAAGAACACGTCGACGGTCGCC
GGCGGCCCATTCAATATTCCTGTTATGCGAAGCTTTTTCTGCGAAATTAC
CGAACCTGCTGTCTTATCCGTCTGTCTGCCTGTATGTCTCTGCCGCTCTG
TCTTCTTGTATACTTCATGTATAATCATTCGTATACAAGGTACTCGGCGG
AGGACAGTGCGGGTTGAACAACTTTCGGACCCTTTGCGTCCCCTGTCATA
AGGCCTCCACTAAACGTCTGGCCCGCGAGCGAGCCTTGTCAAGGCGGCGG
GAAGCACAGGGTGGGAGCGACCGTGGCGGCAGTAACGACTGTGGCCACAG
GGGTACTAAACAGAAAACAGTCCGTGTTGCTCGCAGTATTCATACTCTTT
CTTCTTCTTGTGTAGATAATGGCGATAGGGACGGCGACTAACGGCTTATT
CGGAAGGAAAGGAGCAGCAGGGCGTGGAGACACTTGGCGCTCTATCGAAT
GGATTGGATCCTATTTGACTTCAAGGGGCAGAAGCCGCGTCCACGTGAAC
GCTTGCAGAAACATGGATTGGTACTCGAATTACCAGCGAGTTTTTCGAAC
CTGTGGATCGATCCGCTGCGGTGAAACACAAAAACGAAGATCAAGCACCA
AGATGCTTTGAGGCCGAAGTGGCCTGAGATACCGCAAAGGCCAACCAGCT
GGATATTGCCGACTGAGGAACGTCGATAGATAATTAGACCTGGGAGGGCA
GGCTCGACATCACCATGACCATTCGCGGATACGAGGCGCGGTCACTGGAG
TTGTTTGAAGAGTTGGACAGATAATC
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Coding sequence (CDS) from alignment at H-paniculata_contig1573:15174..20649-

>mRNA_H-paniculata_contig1573.3326.1 ID=mRNA_H-paniculata_contig1573.3326.1|Name=mRNA_H-paniculata_contig1573.3326.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1926bp|location=Sequence derived from alignment at H-paniculata_contig1573:15174..20649- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAGAGCCTTCGTAGAACCTTACATATTTATTTCCATATCGAGATGGAT
TCACTTGTATACGCCTCCCTGTGGCAGTAGCAACAGTGTGACCAGTAGAG
TCACCTGCAGCCTGGCACGCGATTCGAAGTGTCTGGGGCTGGACTCTGTC
AAGTGCAATGTCAGCGACATACGTGAACAGCTGAAGCGAAGATGAGAGCC
TTCGTAGAACCTTACATATTTATTTCCATATCGAGATGGATTCACTTGTA
TACGCCTCCCTGTGGCAGTAGCAACAGTGTGACCAGTAGAGTCACCTGCA
GCCTGGCACGCGATTCGAAGTGTCTGGGGCTGGACTCTGTCAAGTGCAAT
GTCAGCGACATACGTGAACAGCTGAAGCGAAGAGGCTACACACCGACAGG
GGTACGAACAAAAGCAGGCGTATTGGGAGAGCTGATAGGCCTCGTGCGGG
CAGAGGGTTTCGCGCCTCCACACAGAGGCTACACACCGACAGGGGTACGA
ACAAAAGCAGGCGTATTGGGAGAGCTGATAGGCCTCGTGCGGGCAGAGGG
TTTCGCGCCTCCACACAGCGTTGAAGGTAACTTGCGACAGCGGAGGAATC
AACACGCCGGATTCGTGGACCGGACCACGATGGAGACCGGACCCAGAGGG
TTTCCACTCTGTCGCTTCTGCCAGCAAGAGACTCCCAGCAAAATGAGGAC
ATTTTGTTCAAATGGCTGCGTGCACGAGCACAAACGTTGAAGGTAACTTG
CGACAGCGGAGGAATCAACACGCCGGATTCGTGGACCGGACCACGATGGA
GACCGGACCCAGAGGGTTTCCACTCTGTCGCTTCTGCCAGCAAGAGACTC
CCAGCAAAATGAGGACATTTTGTTCAAATGGCTGCGTGCACGAGCACAAA
ATCAGATCGCAAGGGTCGTACGTGCGCAAGTGCCTATCCACCCGGGACGG
CGGCCAGATCAGATCGCAAGGGTCGTACGTGCGCAAGTGCCTATCCACCC
GGGACGGCGGCCAGTGTGCGGAGTGCGGCGCAGACGCAGGAGGGTTGTAC
AAACGTGCTAGGCAAGCGTGGATATCGGAAAAGCTCCCGTTGTTGCGGAC
AAGTGCAGTCGTCCAGGCCGTGGCAGGGACGCCGTTCGAGGGCATGTGTG
CGGAGTGCGGCGCAGACGCAGGAGGGTTGTACAAACGTGCTAGGCAAGCG
TGGATATCGGAAAAGCTCCCGTTGTTGCGGACAAGTGCAGTCGTCCAGGC
CGTGGCAGGGACGCCGTTCGAGGGCATGGTGCCCCGCGCTGGCAGCAACG
CCCGGCCAACGTCGGGGGAATTCTGGCATGCCGATCACATCGTGCCGGTG
GTGCCCCGCGCTGGCAGCAACGCCCGGCCAACGTCGGGGGAATTCTGGCA
TGCCGATCACATCGTGCCGGTGGTACTCGGCGGAGGACAGTGCGGGTTGA
ACAACTTTCGGACCCTTTGCGTCCCCTGTCATAAGGCCTCCACTAAACGT
CTGGCCCGCGAGCGAGCCTTGTCAAGGCGGCGGGAAGCACAGGGTGGGAG
CGACCGTGGCGGCAGTAACGACTGTGGCCACAGGGGTACTAAACAGAAAA
CAGTCCGTGTTGCTCGCAGTATTCATACTCTTTCTTCTTCTTGTGTAGAT
AATGGCGATAGGGACGGCGACTAAGTACTCGGCGGAGGACAGTGCGGGTT
GAACAACTTTCGGACCCTTTGCGTCCCCTGTCATAAGGCCTCCACTAAAC
GTCTGGCCCGCGAGCGAGCCTTGTCAAGGCGGCGGGAAGCACAGGGTGGG
AGCGACCGTGGCGGCAGTAACGACTGTGGCCACAGGGGTACTAAACAGAA
AACAGTCCGTGTTGCTCGCAGTATTCATACTCTTTCTTCTTCTTGTGTAG
ATAATGGCGATAGGGACGGCGACTAA
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