mRNA_H-paniculata_contig15719.3319.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig15719.3319.1
Unique NamemRNA_H-paniculata_contig15719.3319.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig15719.3319.1 vs. uniprot
Match: A0A6H5JAS0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAS0_9PHAE)

HSP 1 Score: 60.1 bits (144), Expect = 3.760e-9
Identity = 28/73 (38.36%), Postives = 48/73 (65.75%), Query Frame = 1 
Query:    4 VTYSINTLTMYKEDPDVVCAQLLQFSTKGNSGLCGIYMELGQEYLIDLVRDENDDLRAVGLCGAFRSWSEVTA 222
            VTY++   T+YK +  V     ++ +T  ++  CG+Y+++G EYL+DL R + + LR+VG CGA +SW+ + A
Sbjct:   44 VTYNVKVGTLYKTEVGVDYPVEIEVTTSASAADCGVYLQVGGEYLLDLYRYKGE-LRSVGACGATQSWTTLPA 115
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BLAST of mRNA_H-paniculata_contig15719.3319.1 vs. uniprot
Match: D7G2B7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2B7_ECTSI)

HSP 1 Score: 60.8 bits (146), Expect = 4.340e-9
Identity = 28/73 (38.36%), Postives = 48/73 (65.75%), Query Frame = 1 
Query:    4 VTYSINTLTMYKEDPDVVCAQLLQFSTKGNSGLCGIYMELGQEYLIDLVRDENDDLRAVGLCGAFRSWSEVTA 222
            VTY++   T+YK +  V     ++ +T  ++  CG+Y+++G EYL+DL R + + LR+VG CGA +SW+ + A
Sbjct:   32 VTYNVKVGTLYKTEAGVDYPVEIEVTTSASAAHCGVYLQVGGEYLLDLYRYKGE-LRSVGACGATQSWTTLPA 103
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig15719.3319.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JAS0_9PHAE3.760e-938.36Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G2B7_ECTSI4.340e-938.36Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig15719contigH-paniculata_contig15719:3019..3240 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size222
Cds size192
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929254.4791715-UTR-H-paniculata_contig15719:3018..30481622929254.4791715-UTR-H-paniculata_contig15719:3018..3048Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig15719 3019..3048 +
1691480789.0811024-UTR-H-paniculata_contig15719:3018..30481691480789.0811024-UTR-H-paniculata_contig15719:3018..3048Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig15719 3019..3048 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929254.4946203-CDS-H-paniculata_contig15719:3048..32401622929254.4946203-CDS-H-paniculata_contig15719:3048..3240Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15719 3049..3240 +
1691480789.0889142-CDS-H-paniculata_contig15719:3048..32401691480789.0889142-CDS-H-paniculata_contig15719:3048..3240Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig15719 3049..3240 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig15719.3319.1prot_H-paniculata_contig15719.3319.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig15719 3049..3240 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig15719.3319.1

>prot_H-paniculata_contig15719.3319.1 ID=prot_H-paniculata_contig15719.3319.1|Name=mRNA_H-paniculata_contig15719.3319.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=64bp
MYKEDPDVVCAQLLQFSTKGNSGLCGIYMELGQEYLIDLVRDENDDLRAV
GLCGAFRSWSEVTA
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mRNA from alignment at H-paniculata_contig15719:3019..3240+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig15719.3319.1 ID=mRNA_H-paniculata_contig15719.3319.1|Name=mRNA_H-paniculata_contig15719.3319.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=222bp|location=Sequence derived from alignment at H-paniculata_contig15719:3019..3240+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GACGTGACTTACAGCATTAACACCCTAACCATGTACAAGGAGGATCCCGA
CGTTGTCTGCGCGCAATTGCTACAGTTCAGTACCAAAGGTAATAGTGGTC
TGTGCGGGATCTACATGGAACTCGGCCAAGAGTACCTCATCGACCTTGTC
CGAGATGAGAACGACGACCTCAGAGCTGTAGGTCTGTGCGGCGCTTTTCG
GTCTTGGAGCGAAGTGACTGCA
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Coding sequence (CDS) from alignment at H-paniculata_contig15719:3019..3240+

>mRNA_H-paniculata_contig15719.3319.1 ID=mRNA_H-paniculata_contig15719.3319.1|Name=mRNA_H-paniculata_contig15719.3319.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=384bp|location=Sequence derived from alignment at H-paniculata_contig15719:3019..3240+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTACAAGGAGGATCCCGACGTTGTCTGCGCGCAATTGCTACAGTTCAG
TACCAAAGGTAATAGTGGTCTGTGCGGGATCTACATGGAACTCGGCCAAG
AGTACCTCATCGACCTTGTCCGAGATGAGAACGACGACCTCAGAGCTGTA
GGTCTGTGCGGCGCTTTTCGGTCTTGGAGCGAAGTGACTGCAATGTACAA
GGAGGATCCCGACGTTGTCTGCGCGCAATTGCTACAGTTCAGTACCAAAG
GTAATAGTGGTCTGTGCGGGATCTACATGGAACTCGGCCAAGAGTACCTC
ATCGACCTTGTCCGAGATGAGAACGACGACCTCAGAGCTGTAGGTCTGTG
CGGCGCTTTTCGGTCTTGGAGCGAAGTGACTGCA
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