mRNA_H-paniculata_contig15672.3293.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
|
Overview
Homology
BLAST of mRNA_H-paniculata_contig15672.3293.1 vs. uniprot
Match: D7FRF5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FRF5_ECTSI) HSP 1 Score: 89.7 bits (221), Expect = 1.740e-20 Identity = 41/55 (74.55%), Postives = 49/55 (89.09%), Query Frame = 1
Query: 1 VKNKLELGRYERAEDVAEDIRLIWSNCILYNSPDSEFGVLASTLRRKFEERYAKV 165
V+ KLE GRYERAEDVA D+RLIWSNCILYNSP SEFG+LA+ L +KFEER+++V
Sbjct: 55 VRTKLEEGRYERAEDVARDVRLIWSNCILYNSPGSEFGLLAAGLAKKFEERFSRV 109
BLAST of mRNA_H-paniculata_contig15672.3293.1 vs. uniprot
Match: A0A7S2PE54_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2PE54_9STRA) HSP 1 Score: 69.7 bits (169), Expect = 6.790e-13 Identity = 33/55 (60.00%), Postives = 40/55 (72.73%), Query Frame = 1
Query: 1 VKNKLELGRYERAEDVAEDIRLIWSNCILYNSPDSEFGVLASTLRRKFEERYAKV 165
VK KLE +YE A + AEDIRLIWSNC+ YN S+F +LA L RKFE+R+ KV
Sbjct: 60 VKRKLESTQYETANECAEDIRLIWSNCMTYNQEGSDFYLLAQALSRKFEDRFRKV 114
BLAST of mRNA_H-paniculata_contig15672.3293.1 vs. uniprot
Match: A0A7R9VVT0_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9VVT0_9STRA) HSP 1 Score: 66.6 bits (161), Expect = 5.790e-12 Identity = 27/55 (49.09%), Postives = 40/55 (72.73%), Query Frame = 1
Query: 1 VKNKLELGRYERAEDVAEDIRLIWSNCILYNSPDSEFGVLASTLRRKFEERYAKV 165
VK K+E G+Y D AED+RLIW NC+ YN+ S+F +LA + +KFE+++AK+
Sbjct: 54 VKRKIETGKYGAIHDAAEDVRLIWKNCMQYNADGSDFFILAQNMSKKFEDKFAKL 108
BLAST of mRNA_H-paniculata_contig15672.3293.1 vs. uniprot
Match: A0A448ZMK4_9STRA (Bromo domain-containing protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZMK4_9STRA) HSP 1 Score: 67.0 bits (162), Expect = 6.830e-12 Identity = 28/55 (50.91%), Postives = 39/55 (70.91%), Query Frame = 1
Query: 1 VKNKLELGRYERAEDVAEDIRLIWSNCILYNSPDSEFGVLASTLRRKFEERYAKV 165
+K +LE G Y A VAEDIRL+W NC+ YN+ S+F +LA + R+FE+RY K+
Sbjct: 57 IKRRLERGHYSTAHQVAEDIRLVWRNCMTYNADGSDFWLLAKSYARRFEDRYRKI 111
BLAST of mRNA_H-paniculata_contig15672.3293.1 vs. uniprot
Match: A0A1E7EX32_9STRA (Bromodomain-containing protein (Fragment) n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7EX32_9STRA) HSP 1 Score: 62.8 bits (151), Expect = 8.500e-12 Identity = 27/55 (49.09%), Postives = 38/55 (69.09%), Query Frame = 1
Query: 1 VKNKLELGRYERAEDVAEDIRLIWSNCILYNSPDSEFGVLASTLRRKFEERYAKV 165
+K ++E G Y A VAED+RL+W NC+ YN S+F +LA + R+FE+RY KV
Sbjct: 15 IKRRIERGAYLNAHLVAEDVRLVWKNCMTYNLEGSDFWLLAKSYARRFEDRYRKV 69
BLAST of mRNA_H-paniculata_contig15672.3293.1 vs. uniprot
Match: A0A7S2MY29_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2MY29_9STRA) HSP 1 Score: 65.9 bits (159), Expect = 1.090e-11 Identity = 27/55 (49.09%), Postives = 39/55 (70.91%), Query Frame = 1
Query: 1 VKNKLELGRYERAEDVAEDIRLIWSNCILYNSPDSEFGVLASTLRRKFEERYAKV 165
VK K+E G+Y D AED+RLIW NC+ YN+ S+F +LA + RKFE+++ K+
Sbjct: 52 VKRKIESGKYGTIHDAAEDVRLIWKNCMQYNADGSDFYILAKNMSRKFEDKFTKL 106
BLAST of mRNA_H-paniculata_contig15672.3293.1 vs. uniprot
Match: B8BSQ7_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BSQ7_THAPS) HSP 1 Score: 65.1 bits (157), Expect = 2.110e-11 Identity = 27/55 (49.09%), Postives = 40/55 (72.73%), Query Frame = 1
Query: 1 VKNKLELGRYERAEDVAEDIRLIWSNCILYNSPDSEFGVLASTLRRKFEERYAKV 165
VK KL +Y+ D A+D+RLIW NC+ YN+ S+F +LA T+ +KFEE++AK+
Sbjct: 51 VKKKLNESKYKSIHDAADDVRLIWKNCMTYNADGSDFYLLAQTMAKKFEEKFAKL 105
BLAST of mRNA_H-paniculata_contig15672.3293.1 vs. uniprot
Match: A0A1E7FVJ2_9STRA (Bromodomain-containing protein (Fragment) n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FVJ2_9STRA) HSP 1 Score: 61.6 bits (148), Expect = 3.990e-11 Identity = 25/55 (45.45%), Postives = 38/55 (69.09%), Query Frame = 1
Query: 1 VKNKLELGRYERAEDVAEDIRLIWSNCILYNSPDSEFGVLASTLRRKFEERYAKV 165
VK + +Y+ D A+DIRL+W+NC+ YN S+F +LA L +KFEE+Y+K+
Sbjct: 29 VKRNISARKYKSIPDAADDIRLVWANCMTYNQDGSDFFLLAKNLGKKFEEKYSKI 83
BLAST of mRNA_H-paniculata_contig15672.3293.1 vs. uniprot
Match: A0A448YXV5_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448YXV5_9STRA) HSP 1 Score: 61.2 bits (147), Expect = 6.040e-10 Identity = 25/55 (45.45%), Postives = 38/55 (69.09%), Query Frame = 1
Query: 1 VKNKLELGRYERAEDVAEDIRLIWSNCILYNSPDSEFGVLASTLRRKFEERYAKV 165
VK + +Y+ + AEDIRL+W+NC+ YN S+F +LA L ++FEE+YAK+
Sbjct: 55 VKRNINSRKYKSIPEAAEDIRLVWTNCMTYNQDGSDFYILAKNLSKRFEEKYAKL 109
BLAST of mRNA_H-paniculata_contig15672.3293.1 vs. uniprot
Match: A0A7S2WIF9_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2WIF9_9STRA) HSP 1 Score: 61.2 bits (147), Expect = 6.260e-10 Identity = 23/55 (41.82%), Postives = 39/55 (70.91%), Query Frame = 1
Query: 1 VKNKLELGRYERAEDVAEDIRLIWSNCILYNSPDSEFGVLASTLRRKFEERYAKV 165
VK +E +Y+ + AED+RLIW NC+ YN+ S+F +LA + +KFE++++K+
Sbjct: 54 VKRNIETSKYKTIHEAAEDVRLIWKNCMTYNADGSDFYILAQNMSKKFEDKFSKL 108 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig15672.3293.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig15672.3293.1 >prot_H-paniculata_contig15672.3293.1 ID=prot_H-paniculata_contig15672.3293.1|Name=mRNA_H-paniculata_contig15672.3293.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=55bp VKNKLELGRYERAEDVAEDIRLIWSNCILYNSPDSEFGVLASTLRRKFEEback to top mRNA from alignment at H-paniculata_contig15672:5736..5900+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig15672.3293.1 ID=mRNA_H-paniculata_contig15672.3293.1|Name=mRNA_H-paniculata_contig15672.3293.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=165bp|location=Sequence derived from alignment at H-paniculata_contig15672:5736..5900+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig15672:5736..5900+ >mRNA_H-paniculata_contig15672.3293.1 ID=mRNA_H-paniculata_contig15672.3293.1|Name=mRNA_H-paniculata_contig15672.3293.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=330bp|location=Sequence derived from alignment at H-paniculata_contig15672:5736..5900+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |